Wall clock time and date at job start Sun Mar 29 2020 21:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.98927 * 2 1 4 4 O 1.43748 * 109.88193 * 238.91421 * 2 1 3 5 5 C 1.44379 * 106.97473 * 267.09305 * 4 2 1 6 6 C 1.54999 * 103.48979 * 319.93511 * 5 4 2 7 7 C 1.54105 * 109.87878 * 121.08584 * 2 1 3 8 8 H 1.08999 * 110.48545 * 358.58259 * 7 2 1 9 9 C 1.50702 * 110.48462 * 236.07126 * 7 2 1 10 10 O 1.21291 * 120.00262 * 335.82013 * 9 7 2 11 11 N 1.34779 * 119.99493 * 155.81722 * 9 7 2 12 12 C 1.46495 * 120.00359 * 355.62139 * 11 9 7 13 13 C 1.37098 * 119.99640 * 175.61640 * 11 9 7 14 14 H 1.08004 * 119.99900 * 29.35938 * 13 11 9 15 15 C 1.38946 * 120.00086 * 209.36521 * 13 11 9 16 16 N 1.31413 * 119.99977 * 14.93363 * 15 13 11 17 17 Si 1.86804 * 119.99957 * 194.93716 * 15 13 11 18 18 H 1.48506 * 109.46999 * 179.97438 * 17 15 13 19 19 H 1.48496 * 109.47089 * 299.99360 * 17 15 13 20 20 H 1.48495 * 109.47138 * 59.99846 * 17 15 13 21 21 H 1.08998 * 109.47244 * 298.91648 * 1 2 3 22 22 H 1.08998 * 109.46963 * 58.91998 * 1 2 3 23 23 H 1.09006 * 109.47019 * 178.91743 * 1 2 3 24 24 H 1.09000 * 110.62050 * 78.44059 * 5 4 2 25 25 H 1.09000 * 110.61492 * 201.27471 * 5 4 2 26 26 H 1.09000 * 110.90531 * 278.82651 * 6 5 4 27 27 H 1.08999 * 110.90462 * 155.22653 * 6 5 4 28 28 H 1.09002 * 109.47318 * 204.73950 * 12 11 9 29 29 H 1.09000 * 109.47253 * 324.74555 * 12 11 9 30 30 H 1.09001 * 109.47174 * 84.74466 * 12 11 9 31 31 H 0.97007 * 119.99613 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0189 -0.6980 -1.1577 5 6 2.2281 -2.0714 -0.7647 6 6 2.8325 -1.9524 0.6576 7 6 2.0540 -0.7483 1.2411 8 1 1.2238 -1.0911 1.8586 9 6 2.9744 0.1371 2.0412 10 8 3.5513 1.0575 1.5015 11 7 3.1563 -0.0937 3.3565 12 6 2.3875 -1.1438 4.0292 13 6 4.0610 0.6541 4.0650 14 1 4.2721 1.6706 3.7674 15 6 4.7065 0.1042 5.1657 16 7 4.6843 -1.1955 5.3588 17 14 5.6056 1.2123 6.3711 18 1 6.2053 0.3866 7.4500 19 1 6.6785 1.9513 5.6585 20 1 4.6474 2.1799 6.9635 21 1 -0.3633 0.4969 0.8995 22 1 -0.3633 0.5305 -0.8801 23 1 -0.3633 -1.0275 -0.0194 24 1 1.2814 -2.6108 -0.7356 25 1 2.9273 -2.5620 -1.4417 26 1 3.9003 -1.7391 0.6099 27 1 2.6432 -2.8558 1.2374 28 1 2.3168 -0.9174 5.0931 29 1 1.3865 -1.1923 3.6007 30 1 2.8873 -2.1030 3.8943 31 1 5.1346 -1.5794 6.1275 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086757574.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:49 Heat of formation + Delta-G solvation = -101.431004 kcal Electronic energy + Delta-G solvation = -14899.567881 eV Core-core repulsion = 12373.304821 eV Total energy + Delta-G solvation = -2526.263061 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.31911 -39.35700 -36.65628 -33.97301 -33.02887 -32.11053 -28.54553 -27.65043 -26.19649 -23.14991 -22.49867 -20.34131 -18.93641 -18.36939 -17.29488 -16.88327 -16.35758 -16.02458 -15.64736 -15.22701 -14.46986 -14.25199 -13.94551 -13.53420 -13.28109 -13.26389 -12.93249 -12.77900 -12.68299 -12.47344 -12.26091 -12.15217 -11.83359 -11.67375 -11.02635 -10.58453 -10.32706 -9.62549 -8.38201 -6.05744 1.36985 1.39172 1.49581 1.95548 2.26156 2.94921 2.97652 3.02975 3.70221 3.84008 3.89781 4.16435 4.24574 4.33714 4.47929 4.62509 4.68547 4.70566 4.86179 4.95661 4.96620 5.09497 5.18733 5.28786 5.30720 5.42497 5.98481 6.10623 6.46950 7.13938 7.42515 8.00379 8.66033 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.054015 B = 0.008503 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.253474 B = 3291.997772 C = 3404.951832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.083 3.917 3 H 0.069 0.931 4 O -0.395 6.395 5 C 0.051 3.949 6 C -0.135 4.135 7 C -0.127 4.127 8 H 0.123 0.877 9 C 0.447 3.553 10 O -0.634 6.634 11 N -0.459 5.459 12 C 0.117 3.883 13 C -0.352 4.352 14 H 0.065 0.935 15 C 0.003 3.997 16 N -0.892 5.892 17 Si 0.986 3.014 18 H -0.268 1.268 19 H -0.279 1.279 20 H -0.265 1.265 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.093 0.907 25 H 0.106 0.894 26 H 0.044 0.956 27 H 0.108 0.892 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.661 -5.405 -4.286 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 H 0.087 0.913 4 O -0.314 6.314 5 C -0.025 4.025 6 C -0.173 4.173 7 C -0.148 4.148 8 H 0.140 0.860 9 C 0.237 3.763 10 O -0.521 6.521 11 N -0.177 5.177 12 C -0.025 4.025 13 C -0.480 4.480 14 H 0.083 0.917 15 C -0.200 4.200 16 N -0.529 5.529 17 Si 0.809 3.191 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.190 1.190 21 H 0.090 0.910 22 H 0.088 0.912 23 H 0.098 0.902 24 H 0.111 0.889 25 H 0.124 0.876 26 H 0.063 0.937 27 H 0.126 0.874 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.066 0.934 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.286 -5.035 -4.557 10.713 hybrid contribution 0.890 0.549 0.966 1.423 sum -7.396 -4.486 -3.591 9.366 Atomic orbital electron populations 1.22200 0.92432 1.03791 1.03047 1.22664 0.95412 0.96268 0.83197 0.91266 1.88840 1.86611 1.22353 1.33614 1.23747 1.01316 0.83577 0.93861 1.23015 0.99071 0.97314 0.97910 1.22678 0.98698 0.96116 0.97309 0.85955 1.20845 0.86080 0.87131 0.82247 1.90469 1.55071 1.35747 1.70853 1.43772 1.35055 1.32376 1.06513 1.21479 0.93217 0.90483 0.97364 1.19490 1.21261 0.96365 1.10922 0.91681 1.26098 0.96813 0.97202 0.99884 1.70022 1.42789 1.10692 1.29420 0.85117 0.78282 0.78145 0.77516 1.19220 1.20467 1.19010 0.91021 0.91197 0.90158 0.88868 0.87552 0.93690 0.87363 0.92841 0.90985 0.93389 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.95 9.30 71.98 0.67 -3.28 16 2 C 0.08 2.90 3.62 30.97 0.11 3.01 16 3 H 0.07 2.97 6.77 -2.39 -0.02 2.96 16 4 O -0.39 -13.67 11.19 -148.98 -1.67 -15.33 16 5 C 0.05 1.34 7.66 72.67 0.56 1.90 16 6 C -0.13 -4.36 6.70 31.89 0.21 -4.14 16 7 C -0.13 -4.63 2.45 -10.55 -0.03 -4.65 16 8 H 0.12 3.68 5.65 -2.39 -0.01 3.67 16 9 C 0.45 22.63 6.66 87.66 0.58 23.21 16 10 O -0.63 -37.92 15.36 -3.06 -0.05 -37.97 16 11 N -0.46 -24.02 2.99 -658.90 -1.97 -25.99 16 12 C 0.12 5.02 8.41 127.77 1.07 6.10 16 13 C -0.35 -20.46 9.13 84.04 0.77 -19.69 16 14 H 0.07 4.06 7.52 -2.91 -0.02 4.04 16 15 C 0.00 0.15 4.97 84.93 0.42 0.57 16 16 N -0.89 -47.45 11.32 21.66 0.25 -47.20 16 17 Si 0.99 42.78 29.58 68.60 2.03 44.81 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 21 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 23 H 0.08 1.62 8.11 -2.38 -0.02 1.60 16 24 H 0.09 1.82 8.11 -2.39 -0.02 1.80 16 25 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 26 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 27 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 28 H 0.05 2.41 7.15 -2.39 -0.02 2.40 16 29 H 0.07 2.40 6.18 -2.39 -0.01 2.38 16 30 H 0.05 2.08 7.81 -2.39 -0.02 2.06 16 31 H 0.27 13.65 8.31 -92.70 -0.77 12.88 16 Total: -1.00 -70.84 256.70 4.08 -66.76 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.11 Total: 11.90 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 4.37 Total: 3.02 kcal Atomic # 7 Polarization: -71.47 SS G_CDS: -1.72 Total: -73.19 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -1.71 Total: -53.30 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -70.84 4.08 -66.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757574.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.673 kcal (2) G-P(sol) polarization free energy of solvation -70.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds