Wall clock time and date at job start Sun Mar 29 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.87501 * 2 1 4 4 O 1.43753 * 109.87792 * 238.83725 * 2 1 3 5 5 C 1.44373 * 106.97758 * 267.09104 * 4 2 1 6 6 C 1.55231 * 103.56675 * 320.01067 * 5 4 2 7 7 C 1.54098 * 109.88204 * 121.00863 * 2 1 3 8 8 H 1.08998 * 110.48768 * 358.58293 * 7 2 1 9 9 C 1.50696 * 110.48970 * 236.06895 * 7 2 1 10 10 O 1.21284 * 120.00109 * 1.84176 * 9 7 2 11 11 N 1.34777 * 120.00137 * 181.83961 * 9 7 2 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.46928 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 H 1.09004 * 109.46864 * 298.98976 * 1 2 3 22 22 H 1.08993 * 109.46975 * 58.99410 * 1 2 3 23 23 H 1.09001 * 109.47277 * 178.99525 * 1 2 3 24 24 H 1.09004 * 110.62248 * 78.43457 * 5 4 2 25 25 H 1.09000 * 110.62180 * 201.28325 * 5 4 2 26 26 H 1.08996 * 110.89082 * 278.75029 * 6 5 4 27 27 H 1.08993 * 111.02460 * 155.07060 * 6 5 4 28 28 H 0.96995 * 120.00018 * 0.27749 * 11 9 7 29 29 H 1.09000 * 109.47212 * 300.00355 * 12 11 9 30 30 H 1.09001 * 109.46577 * 60.00430 * 12 11 9 31 31 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1568 5 6 2.2280 -2.0724 -0.7620 6 6 2.8317 -1.9535 0.6631 7 6 2.0541 -0.7465 1.2420 8 1 1.2239 -1.0886 1.8601 9 6 2.9745 0.1398 2.0409 10 8 3.1770 1.2814 1.6849 11 7 3.5726 -0.3360 3.1510 12 6 4.4678 0.5256 3.9273 13 6 5.0020 -0.2409 5.1097 14 1 4.7042 -1.2670 5.2675 15 6 5.8702 0.3681 5.9908 16 7 6.2318 1.6181 5.7996 17 14 6.5319 -0.5816 7.4569 18 1 7.2818 -1.7709 6.9788 19 1 7.4385 0.2920 8.2444 20 1 5.4012 -1.0209 8.3134 21 1 -0.3633 0.4981 0.8989 22 1 -0.3633 0.5293 -0.8808 23 1 -0.3634 -1.0275 -0.0180 24 1 1.2813 -2.6118 -0.7321 25 1 2.9273 -2.5640 -1.4384 26 1 3.8999 -1.7417 0.6163 27 1 2.6404 -2.8549 1.2452 28 1 3.4138 -1.2502 3.4335 29 1 5.2978 0.8477 3.2984 30 1 3.9176 1.3987 4.2782 31 1 6.8428 2.0464 6.4192 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086757616.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:00 Heat of formation + Delta-G solvation = -99.821931 kcal Electronic energy + Delta-G solvation = -14279.464655 eV Core-core repulsion = 11753.271369 eV Total energy + Delta-G solvation = -2526.193286 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.11331 -37.97124 -34.25709 -32.64302 -32.03157 -31.11042 -27.69784 -26.30537 -23.02263 -21.95423 -21.05652 -19.48464 -17.59753 -16.37764 -16.09315 -15.29571 -15.10364 -14.48160 -14.36658 -13.91294 -13.31409 -13.09720 -12.65453 -12.19125 -11.96172 -11.93520 -11.54755 -11.37322 -11.04888 -10.92373 -10.82243 -10.74501 -10.34092 -9.60724 -9.43313 -9.04322 -8.76122 -7.93093 -6.18764 -4.26246 3.23447 3.28038 3.28393 3.29855 3.93215 3.96774 4.33219 4.61955 4.81295 5.01867 5.14586 5.17145 5.21427 5.43528 5.54391 5.59187 5.62685 5.69809 5.87389 6.04790 6.12199 6.33444 6.96879 7.27186 7.38933 7.48573 7.62787 7.94341 8.57676 8.73956 9.04262 9.40384 10.91423 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059559 B = 0.006286 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.012600 B = 4453.002875 C = 4662.974167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.079 3.921 3 H 0.119 0.881 4 O -0.371 6.371 5 C 0.047 3.953 6 C -0.145 4.145 7 C -0.143 4.143 8 H 0.105 0.895 9 C 0.507 3.493 10 O -0.552 6.552 11 N -0.709 5.709 12 C 0.249 3.751 13 C -0.545 4.545 14 H 0.062 0.938 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.905 3.095 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.275 1.275 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.391 0.609 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.099 -8.545 -8.412 15.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.021 3.979 3 H 0.136 0.864 4 O -0.290 6.290 5 C -0.030 4.030 6 C -0.183 4.183 7 C -0.165 4.165 8 H 0.123 0.877 9 C 0.291 3.709 10 O -0.431 6.431 11 N -0.356 5.356 12 C 0.128 3.872 13 C -0.583 4.583 14 H 0.080 0.920 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.732 3.268 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.201 1.201 21 H 0.086 0.914 22 H 0.082 0.918 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.102 0.898 27 H 0.105 0.895 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.776 -7.456 -8.755 14.466 hybrid contribution 0.275 -1.042 1.309 1.696 sum -8.501 -8.498 -7.446 14.140 Atomic orbital electron populations 1.22265 0.95558 1.02013 1.02627 1.22801 0.93485 0.98618 0.82970 0.86362 1.88915 1.86158 1.20451 1.33441 1.23560 0.99523 0.84906 0.95025 1.23170 1.01319 0.97245 0.96546 1.22757 0.99118 0.96512 0.98084 0.87740 1.20123 0.81412 0.87778 0.81601 1.90641 1.63833 1.19195 1.69474 1.46434 1.46907 1.16687 1.25595 1.19128 0.88217 0.90087 0.89748 1.21182 1.28740 0.98934 1.09483 0.91957 1.24956 0.95922 0.94973 0.98145 1.69966 1.33583 1.11383 1.37325 0.86462 0.78855 0.79591 0.81923 1.20053 1.21027 1.20068 0.91424 0.91802 0.92645 0.92317 0.88991 0.89752 0.89517 0.77690 0.95493 0.95470 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.95 9.30 37.16 0.35 -1.61 16 2 C 0.08 1.17 3.71 -26.16 -0.10 1.08 16 3 H 0.12 2.08 6.44 -51.93 -0.33 1.75 16 4 O -0.37 -5.57 11.19 -35.23 -0.39 -5.96 16 5 C 0.05 0.53 7.67 38.34 0.29 0.82 16 6 C -0.14 -1.77 6.69 -24.59 -0.16 -1.94 16 7 C -0.14 -2.08 3.06 -90.24 -0.28 -2.35 16 8 H 0.10 1.27 7.70 -51.93 -0.40 0.87 16 9 C 0.51 10.13 7.03 -10.99 -0.08 10.06 16 10 O -0.55 -13.37 15.26 5.55 0.08 -13.28 16 11 N -0.71 -14.82 5.51 -61.47 -0.34 -15.16 16 12 C 0.25 6.60 5.43 -5.19 -0.03 6.57 16 13 C -0.55 -14.73 9.28 -34.44 -0.32 -15.05 16 14 H 0.06 1.56 7.60 -52.48 -0.40 1.17 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 17 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 18 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.56 8.11 -51.93 -0.42 0.14 16 24 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 25 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.08 1.18 7.86 -51.93 -0.41 0.77 16 27 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 29 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 265.03 15.07 3.99 3.99 Total: -1.00 -31.94 265.03 -5.75 -37.69 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -4.39 Total: 3.11 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: -0.42 Total: -0.75 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.40 Total: -40.51 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.31 Total: -19.24 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.94 -5.75 -37.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757616.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.127 kcal (2) G-P(sol) polarization free energy of solvation -31.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds