Wall clock time and date at job start Sun Mar 29 2020 21:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.87501 * 2 1 4 4 O 1.43753 * 109.87792 * 238.83725 * 2 1 3 5 5 C 1.44373 * 106.97758 * 267.09104 * 4 2 1 6 6 C 1.55231 * 103.56675 * 320.01067 * 5 4 2 7 7 C 1.54098 * 109.88204 * 121.00863 * 2 1 3 8 8 H 1.08998 * 110.48768 * 358.58293 * 7 2 1 9 9 C 1.50696 * 110.48970 * 236.06895 * 7 2 1 10 10 O 1.21284 * 120.00109 * 1.84176 * 9 7 2 11 11 N 1.34777 * 120.00137 * 181.83961 * 9 7 2 12 12 C 1.46506 * 119.99873 * 179.97438 * 11 9 7 13 13 C 1.50699 * 109.46928 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99963 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99835 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47183 * 60.00274 * 17 15 13 19 19 H 1.48496 * 109.47425 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47216 * 300.00267 * 17 15 13 21 21 H 1.09004 * 109.46864 * 298.98976 * 1 2 3 22 22 H 1.08993 * 109.46975 * 58.99410 * 1 2 3 23 23 H 1.09001 * 109.47277 * 178.99525 * 1 2 3 24 24 H 1.09004 * 110.62248 * 78.43457 * 5 4 2 25 25 H 1.09000 * 110.62180 * 201.28325 * 5 4 2 26 26 H 1.08996 * 110.89082 * 278.75029 * 6 5 4 27 27 H 1.08993 * 111.02460 * 155.07060 * 6 5 4 28 28 H 0.96995 * 120.00018 * 0.27749 * 11 9 7 29 29 H 1.09000 * 109.47212 * 300.00355 * 12 11 9 30 30 H 1.09001 * 109.46577 * 60.00430 * 12 11 9 31 31 H 0.96992 * 120.00038 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 8 2.0188 -0.6996 -1.1568 5 6 2.2280 -2.0724 -0.7620 6 6 2.8317 -1.9535 0.6631 7 6 2.0541 -0.7465 1.2420 8 1 1.2239 -1.0886 1.8601 9 6 2.9745 0.1398 2.0409 10 8 3.1770 1.2814 1.6849 11 7 3.5726 -0.3360 3.1510 12 6 4.4678 0.5256 3.9273 13 6 5.0020 -0.2409 5.1097 14 1 4.7042 -1.2670 5.2675 15 6 5.8702 0.3681 5.9908 16 7 6.2318 1.6181 5.7996 17 14 6.5319 -0.5816 7.4569 18 1 7.2818 -1.7709 6.9788 19 1 7.4385 0.2920 8.2444 20 1 5.4012 -1.0209 8.3134 21 1 -0.3633 0.4981 0.8989 22 1 -0.3633 0.5293 -0.8808 23 1 -0.3634 -1.0275 -0.0180 24 1 1.2813 -2.6118 -0.7321 25 1 2.9273 -2.5640 -1.4384 26 1 3.8999 -1.7417 0.6163 27 1 2.6404 -2.8549 1.2452 28 1 3.4138 -1.2502 3.4335 29 1 5.2978 0.8477 3.2984 30 1 3.9176 1.3987 4.2782 31 1 6.8428 2.0464 6.4192 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086757616.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:00 Heat of formation + Delta-G solvation = -124.191750 kcal Electronic energy + Delta-G solvation = -14280.521409 eV Core-core repulsion = 11753.271369 eV Total energy + Delta-G solvation = -2527.250041 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.44174 -39.44983 -36.21157 -34.48236 -33.40160 -32.11341 -29.52595 -27.60908 -24.88755 -23.12422 -22.36358 -21.07025 -19.18182 -18.00857 -17.38659 -16.89116 -16.69665 -16.23453 -15.76676 -15.29546 -14.71607 -14.26158 -14.10543 -13.97021 -13.66022 -13.03427 -12.96963 -12.78592 -12.67767 -12.39226 -12.23947 -11.90132 -11.80960 -11.53115 -10.81213 -10.79585 -10.56505 -9.88887 -8.30490 -6.47893 1.42846 1.47031 1.55391 1.67048 2.28623 2.50637 2.92153 3.04353 3.50211 3.71967 3.83780 4.15027 4.26112 4.35345 4.46112 4.64220 4.68061 4.84938 4.93303 5.05368 5.10232 5.17187 5.20287 5.27806 5.45545 5.65652 5.82125 5.96215 6.62608 6.84074 7.21161 7.42874 8.81666 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.059559 B = 0.006286 C = 0.006003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.012600 B = 4453.002875 C = 4662.974167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.076 3.924 3 H 0.077 0.923 4 O -0.396 6.396 5 C 0.045 3.955 6 C -0.142 4.142 7 C -0.131 4.131 8 H 0.141 0.859 9 C 0.501 3.499 10 O -0.602 6.602 11 N -0.701 5.701 12 C 0.265 3.735 13 C -0.557 4.557 14 H 0.086 0.914 15 C 0.003 3.997 16 N -0.932 5.932 17 Si 0.987 3.013 18 H -0.261 1.261 19 H -0.286 1.286 20 H -0.261 1.261 21 H 0.070 0.930 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.059 0.941 27 H 0.125 0.875 28 H 0.410 0.590 29 H -0.015 1.015 30 H -0.012 1.012 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.308 -11.768 -7.887 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 H 0.095 0.905 4 O -0.316 6.316 5 C -0.031 4.031 6 C -0.179 4.179 7 C -0.153 4.153 8 H 0.159 0.841 9 C 0.289 3.711 10 O -0.485 6.485 11 N -0.350 5.350 12 C 0.142 3.858 13 C -0.595 4.595 14 H 0.104 0.896 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.810 3.190 18 H -0.186 1.186 19 H -0.212 1.212 20 H -0.185 1.185 21 H 0.089 0.911 22 H 0.084 0.916 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.125 0.875 26 H 0.078 0.922 27 H 0.143 0.857 28 H 0.246 0.754 29 H 0.003 0.997 30 H 0.006 0.994 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.016 -10.731 -8.249 16.838 hybrid contribution 0.655 0.005 1.057 1.243 sum -9.361 -10.726 -7.193 15.950 Atomic orbital electron populations 1.22194 0.92702 1.03770 1.02964 1.22730 0.95614 0.96735 0.83180 0.90477 1.88889 1.86525 1.22542 1.33618 1.23835 1.01479 0.83390 0.94424 1.23240 0.99550 0.97376 0.97772 1.22794 0.98877 0.96080 0.97510 0.84123 1.21187 0.81112 0.87802 0.81023 1.90623 1.65438 1.21893 1.70512 1.46146 1.46285 1.16949 1.25650 1.18564 0.87330 0.90039 0.89857 1.21589 1.28710 0.99916 1.09299 0.89603 1.26101 0.96060 0.95865 1.01642 1.70139 1.34470 1.13623 1.38846 0.85179 0.78357 0.78049 0.77464 1.18574 1.21168 1.18521 0.91112 0.91572 0.90056 0.89123 0.87499 0.92172 0.85712 0.75431 0.99709 0.99422 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 9.30 71.98 0.67 -2.66 16 2 C 0.08 2.18 3.71 30.97 0.11 2.29 16 3 H 0.08 2.86 6.44 -2.39 -0.02 2.84 16 4 O -0.40 -11.34 11.19 -148.98 -1.67 -13.01 16 5 C 0.04 0.86 7.67 72.75 0.56 1.42 16 6 C -0.14 -3.05 6.69 31.98 0.21 -2.84 16 7 C -0.13 -3.57 3.06 -10.55 -0.03 -3.60 16 8 H 0.14 2.86 7.70 -2.39 -0.02 2.84 16 9 C 0.50 20.40 7.03 87.66 0.62 21.02 16 10 O -0.60 -30.86 15.26 -3.04 -0.05 -30.91 16 11 N -0.70 -29.56 5.51 -466.78 -2.57 -32.14 16 12 C 0.26 14.66 5.43 85.63 0.46 15.12 16 13 C -0.56 -30.20 9.28 25.60 0.24 -29.96 16 14 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 15 C 0.00 0.16 5.46 84.65 0.46 0.62 16 16 N -0.93 -56.50 13.29 21.45 0.28 -56.22 16 17 Si 0.99 41.94 29.54 68.60 2.03 43.97 16 18 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 19 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 20 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.08 1.29 8.11 -2.39 -0.02 1.27 16 24 H 0.09 1.23 8.11 -2.38 -0.02 1.21 16 25 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 1.60 7.86 -2.39 -0.02 1.58 16 27 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.41 13.93 8.32 -92.71 -0.77 13.16 16 29 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 30 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 31 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -73.50 265.03 1.68 -71.82 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 0.35 Total: 15.07 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 3.30 Total: 1.41 kcal Atomic # 7 Polarization: -86.07 SS G_CDS: -2.29 Total: -88.35 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -1.71 Total: -43.92 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -73.50 1.68 -71.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757616.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.368 kcal (2) G-P(sol) polarization free energy of solvation -73.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds