Wall clock time and date at job start Sun Mar 29 2020 21:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.87373 * 2 1 4 4 O 1.43753 * 109.87911 * 238.84000 * 2 1 3 5 5 C 1.44381 * 106.97540 * 214.06458 * 4 2 1 6 6 C 1.54998 * 103.48877 * 40.06238 * 5 4 2 7 7 C 1.54096 * 109.87794 * 121.01272 * 2 1 3 8 8 H 1.09004 * 110.48835 * 240.12618 * 7 2 1 9 9 C 1.50704 * 110.48864 * 2.63867 * 7 2 1 10 10 O 1.21284 * 119.99360 * 86.51697 * 9 7 2 11 11 N 1.34765 * 120.00233 * 266.51510 * 9 7 2 12 12 C 1.46501 * 120.00135 * 179.97438 * 11 9 7 13 13 C 1.50700 * 109.47582 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99904 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00443 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99677 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00349 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47401 * 89.99638 * 17 15 13 19 19 H 1.48501 * 109.47095 * 209.99975 * 17 15 13 20 20 H 1.48501 * 109.46852 * 329.99709 * 17 15 13 21 21 H 1.09002 * 109.47140 * 297.00685 * 1 2 3 22 22 H 1.09005 * 109.46849 * 57.00459 * 1 2 3 23 23 H 1.08994 * 109.47180 * 177.00122 * 1 2 3 24 24 H 1.08995 * 110.61934 * 281.56246 * 5 4 2 25 25 H 1.09000 * 110.75035 * 158.62408 * 5 4 2 26 26 H 1.09005 * 110.90628 * 204.77815 * 6 5 4 27 27 H 1.08994 * 110.93865 * 81.18774 * 6 5 4 28 28 H 0.97004 * 120.00444 * 0.02562 * 11 9 7 29 29 H 1.08999 * 109.47227 * 300.00016 * 12 11 9 30 30 H 1.09002 * 109.47063 * 59.99848 * 12 11 9 31 31 H 0.96998 * 119.99815 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 8 2.0188 -0.6995 -1.1568 5 6 3.2379 -1.3652 -0.7630 6 6 2.9194 -1.8907 0.6600 7 6 2.0539 -0.7466 1.2420 8 1 2.6620 -0.0836 1.8575 9 6 0.9071 -1.3050 2.0446 10 8 0.4498 -2.3946 1.7716 11 7 0.3898 -0.5936 3.0656 12 6 -0.7254 -1.1361 3.8455 13 6 -1.1136 -0.1521 4.9188 14 1 -0.5830 0.7841 5.0106 15 6 -2.1462 -0.4468 5.7836 16 7 -2.7927 -1.5866 5.6715 17 14 -2.6278 0.7732 7.1136 18 1 -3.6638 1.6972 6.5861 19 1 -3.1692 0.0396 8.2857 20 1 -1.4331 1.5528 7.5262 21 1 -0.3633 0.4667 0.9156 22 1 -0.3633 0.5597 -0.8620 23 1 -0.3633 -1.0262 -0.0538 24 1 4.0685 -0.6600 -0.7347 25 1 3.4611 -2.1926 -1.4366 26 1 3.8331 -2.0210 1.2401 27 1 2.3540 -2.8214 0.6140 28 1 0.7553 0.2781 3.2838 29 1 -1.5772 -1.3111 3.1883 30 1 -0.4229 -2.0765 4.3064 31 1 -3.5193 -1.7938 6.2797 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086757619.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:06 Heat of formation + Delta-G solvation = -96.124636 kcal Electronic energy + Delta-G solvation = -14465.781190 eV Core-core repulsion = 11939.748230 eV Total energy + Delta-G solvation = -2526.032959 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19523 -37.88840 -34.22250 -32.59867 -32.00033 -31.31448 -27.51713 -25.97224 -23.15094 -22.06559 -21.28967 -19.29389 -17.10120 -16.65855 -15.80221 -15.54403 -15.22103 -14.78604 -14.39397 -13.97554 -13.09888 -12.82157 -12.21935 -12.12695 -12.01132 -11.82464 -11.68070 -11.09919 -10.99067 -10.89906 -10.83314 -10.70763 -10.33308 -9.71622 -9.41798 -9.00117 -8.75450 -7.90872 -6.18674 -4.25860 3.22710 3.25961 3.28970 3.31207 3.88577 4.02777 4.34310 4.60537 4.88490 5.06480 5.13435 5.17572 5.26901 5.47058 5.54794 5.61446 5.75764 5.81658 6.02171 6.14695 6.24992 6.51095 6.95052 7.28289 7.40429 7.49255 7.63977 7.94793 8.59245 8.75471 9.06504 9.40973 10.91524 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062718 B = 0.006563 C = 0.006420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.333013 B = 4265.529824 C = 4360.635217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.093 3.907 3 H 0.073 0.927 4 O -0.372 6.372 5 C 0.049 3.951 6 C -0.142 4.142 7 C -0.147 4.147 8 H 0.097 0.903 9 C 0.514 3.486 10 O -0.551 6.551 11 N -0.712 5.712 12 C 0.249 3.751 13 C -0.544 4.544 14 H 0.063 0.937 15 C 0.064 3.936 16 N -0.885 5.885 17 Si 0.904 3.096 18 H -0.278 1.278 19 H -0.284 1.284 20 H -0.273 1.273 21 H 0.078 0.922 22 H 0.061 0.939 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.097 0.903 28 H 0.390 0.610 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 4.227 -8.453 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.035 3.965 3 H 0.091 0.909 4 O -0.292 6.292 5 C -0.028 4.028 6 C -0.180 4.180 7 C -0.169 4.169 8 H 0.115 0.885 9 C 0.298 3.702 10 O -0.430 6.430 11 N -0.360 5.360 12 C 0.129 3.871 13 C -0.582 4.582 14 H 0.081 0.919 15 C -0.140 4.140 16 N -0.523 5.523 17 Si 0.731 3.269 18 H -0.204 1.204 19 H -0.210 1.210 20 H -0.198 1.198 21 H 0.097 0.903 22 H 0.080 0.920 23 H 0.093 0.907 24 H 0.076 0.924 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.116 0.884 28 H 0.223 0.777 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 10.048 3.326 -8.732 13.722 hybrid contribution -0.024 1.078 1.184 1.602 sum 10.025 4.404 -7.548 13.299 Atomic orbital electron populations 1.22135 0.93141 1.04245 1.02757 1.22554 0.95801 0.94734 0.83408 0.90889 1.88885 1.39651 1.67660 1.32955 1.23514 0.87580 0.96236 0.95470 1.23132 0.99677 0.99554 0.95654 1.22836 0.97234 0.98954 0.97853 0.88519 1.19947 0.83903 0.85507 0.80835 1.90650 1.62155 1.21313 1.68876 1.46529 1.36476 1.21059 1.31925 1.19109 0.83335 0.94864 0.89815 1.21222 1.17903 1.03881 1.15229 0.91908 1.24954 0.95815 0.95568 0.97668 1.69975 1.22034 1.22398 1.37854 0.86412 0.78801 0.80740 0.80946 1.20434 1.20994 1.19760 0.90345 0.92006 0.90695 0.92372 0.88946 0.90161 0.88435 0.77735 0.95491 0.95567 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.41 37.16 0.31 -2.32 16 2 C 0.09 1.33 4.05 -26.16 -0.11 1.22 16 3 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 4 O -0.37 -5.58 11.19 -35.23 -0.39 -5.97 16 5 C 0.05 0.57 7.72 38.21 0.29 0.86 16 6 C -0.14 -1.89 6.66 -24.72 -0.16 -2.06 16 7 C -0.15 -2.15 3.43 -90.24 -0.31 -2.46 16 8 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 9 C 0.51 10.14 4.78 -10.99 -0.05 10.09 16 10 O -0.55 -13.16 15.03 5.55 0.08 -13.08 16 11 N -0.71 -14.71 5.02 -61.47 -0.31 -15.02 16 12 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 13 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 14 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 15 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 16 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 17 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 21 H 0.08 1.29 7.09 -51.93 -0.37 0.92 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.07 1.41 7.05 -51.93 -0.37 1.04 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 1.56 6.91 -51.93 -0.36 1.20 16 28 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 261.02 15.07 3.93 3.93 Total: -1.00 -31.72 261.02 -5.79 -37.51 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.35 Total: 3.63 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.47 Total: -1.43 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.43 Total: -40.28 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.31 Total: -19.05 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.72 -5.79 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086757619.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.613 kcal (2) G-P(sol) polarization free energy of solvation -31.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds