Wall clock time and date at job start Sun Mar 29 2020 22:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 113.00028 * 2 1 4 4 N 1.46900 * 109.47169 * 309.66443 * 3 2 1 5 5 C 1.46900 * 111.00193 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47099 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46994 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47286 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99751 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00435 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99708 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47233 * 89.99799 * 12 10 8 14 14 H 1.48497 * 109.46901 * 209.99834 * 12 10 8 15 15 H 1.48498 * 109.46942 * 329.99999 * 12 10 8 16 16 C 1.54033 * 113.81775 * 228.01136 * 2 1 3 17 17 O 1.44180 * 85.51695 * 268.35496 * 16 2 1 18 18 C 1.44179 * 93.34172 * 335.80744 * 17 16 2 19 19 H 1.08998 * 109.47216 * 297.84770 * 1 2 3 20 20 H 1.09002 * 109.46563 * 57.84001 * 1 2 3 21 21 H 1.08994 * 109.47220 * 177.84089 * 1 2 3 22 22 H 1.09005 * 109.47760 * 69.66172 * 3 2 1 23 23 H 1.08994 * 109.47498 * 189.66511 * 3 2 1 24 24 H 1.00900 * 110.99971 * 56.04896 * 4 3 2 25 25 H 1.09007 * 109.46937 * 299.99561 * 5 4 3 26 26 H 1.08998 * 109.47322 * 59.99582 * 5 4 3 27 27 H 1.08998 * 109.46872 * 299.99347 * 6 5 4 28 28 H 1.09000 * 109.46894 * 60.00000 * 6 5 4 29 29 H 1.09005 * 109.47352 * 299.99959 * 7 6 5 30 30 H 1.08998 * 109.47246 * 59.99554 * 7 6 5 31 31 H 0.97001 * 119.99591 * 180.02562 * 11 10 8 32 32 H 1.09003 * 113.86206 * 22.50017 * 16 2 1 33 33 H 1.08990 * 113.86508 * 154.21018 * 16 2 1 34 34 H 1.08993 * 113.86384 * 270.04716 * 18 17 16 35 35 H 1.08999 * 113.98278 * 138.35160 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 7 1.5055 2.2045 -1.0662 5 6 2.0566 3.5658 -1.0967 6 6 1.3850 4.3629 -2.2169 7 6 1.9586 5.7809 -2.2483 8 6 1.2977 6.5659 -3.3519 9 1 0.5436 6.1000 -3.9689 10 6 1.6556 7.8787 -3.5740 11 7 2.5736 8.4461 -2.8223 12 14 0.8358 8.8519 -4.9416 13 1 -0.3728 9.5313 -4.4097 14 1 1.7850 9.8674 -5.4640 15 1 0.4435 7.9305 -6.0381 16 6 2.1521 -0.9427 -1.0474 17 8 2.1443 -1.9305 0.0028 18 6 2.1520 -0.9397 1.0502 19 1 -0.3633 0.4800 0.9086 20 1 -0.3632 0.5470 -0.8700 21 1 -0.3633 -1.0269 -0.0387 22 1 1.9411 1.8825 0.9636 23 1 3.2023 1.3470 -0.1725 24 1 0.5017 2.2227 -0.9648 25 1 1.8697 4.0551 -0.1407 26 1 3.1306 3.5191 -1.2771 27 1 1.5716 3.8739 -3.1730 28 1 0.3112 4.4097 -2.0360 29 1 1.7718 6.2698 -1.2921 30 1 3.0326 5.7346 -2.4288 31 1 2.8252 9.3699 -2.9784 32 1 1.4876 -1.1778 -1.8789 33 1 3.1512 -0.6478 -1.3680 34 1 3.1511 -0.6439 1.3700 35 1 1.4883 -1.1707 1.8834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087197513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:52 Heat of formation + Delta-G solvation = -33.868492 kcal Electronic energy + Delta-G solvation = -13991.107539 eV Core-core repulsion = 11603.607303 eV Total energy + Delta-G solvation = -2387.500236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.78336 -36.48947 -33.83021 -32.28031 -30.41863 -27.22650 -26.69641 -26.18009 -23.90944 -22.07824 -20.22739 -18.83974 -16.51642 -16.22890 -16.16615 -15.89230 -15.09254 -14.55912 -14.08975 -13.72729 -13.62624 -13.15355 -12.51569 -12.26218 -12.10677 -11.81466 -11.47446 -11.34377 -10.88041 -10.75976 -10.58689 -10.56357 -10.34212 -9.76969 -9.69299 -9.32059 -9.04492 -8.33968 -8.19927 -5.99114 -4.01237 3.32632 3.38776 3.42638 3.59316 3.93499 4.43572 4.50632 4.71043 4.91214 5.01039 5.20431 5.34787 5.36763 5.46871 5.54945 5.65332 5.71275 5.79572 5.82076 5.90193 5.98157 6.04830 6.14542 6.30765 6.70612 6.74714 7.13295 7.30450 7.58910 7.68935 7.83722 8.01267 8.44530 9.06005 9.62819 11.12380 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.078172 B = 0.004358 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.100410 B = 6422.773136 C = 6538.831941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.125 4.125 3 C 0.065 3.935 4 N -0.690 5.690 5 C 0.058 3.942 6 C -0.107 4.107 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.055 0.945 10 C 0.056 3.944 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.053 3.947 17 O -0.386 6.386 18 C 0.041 3.959 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.031 0.969 23 H 0.073 0.927 24 H 0.338 0.662 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.978 -15.964 7.048 17.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.126 4.126 3 C -0.064 4.064 4 N -0.321 5.321 5 C -0.070 4.070 6 C -0.145 4.145 7 C -0.016 4.016 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.145 4.145 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.024 4.024 17 O -0.305 6.305 18 C -0.036 4.036 19 H 0.078 0.922 20 H 0.091 0.909 21 H 0.081 0.919 22 H 0.049 0.951 23 H 0.092 0.908 24 H 0.157 0.843 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.459 -16.312 6.580 17.650 hybrid contribution -0.738 1.304 0.117 1.503 sum -2.198 -15.008 6.697 16.580 Atomic orbital electron populations 1.21568 0.92225 1.02529 1.02577 1.23666 0.97561 0.95484 0.95866 1.21975 0.99236 0.91955 0.93277 1.60588 1.09887 1.14646 1.47022 1.22142 0.99828 0.86509 0.98545 1.21622 0.98681 0.97647 0.96530 1.19068 0.96285 0.89298 0.96958 1.21258 1.21825 0.96547 1.16094 0.92670 1.25032 0.95187 0.97867 0.96434 1.69971 1.31165 1.13109 1.39402 0.86591 0.79190 0.79849 0.82364 1.20706 1.21229 1.19838 1.24006 1.00643 0.85729 0.92016 1.89641 1.95758 1.27920 1.17174 1.24040 1.00384 0.86814 0.92394 0.92233 0.90949 0.91858 0.95124 0.90813 0.84349 0.95802 0.91492 0.92529 0.93706 0.96838 0.96571 0.93041 0.89092 0.89961 0.90240 0.89381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.24 8.58 37.16 0.32 -0.93 16 2 C -0.13 -1.28 1.21 -153.43 -0.19 -1.47 16 3 C 0.07 0.76 5.23 -3.83 -0.02 0.74 16 4 N -0.69 -9.71 6.39 -113.78 -0.73 -10.43 16 5 C 0.06 1.00 5.69 -3.82 -0.02 0.97 16 6 C -0.11 -2.21 5.41 -26.73 -0.14 -2.36 16 7 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 8 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 9 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 10 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 12 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 16 C 0.05 0.57 8.36 37.61 0.31 0.89 16 17 O -0.39 -4.69 12.37 -35.23 -0.44 -5.13 16 18 C 0.04 0.40 8.36 37.61 0.31 0.71 16 19 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.07 0.71 6.72 -51.93 -0.35 0.36 16 21 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 22 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.07 0.87 7.99 -51.93 -0.41 0.45 16 24 H 0.34 4.47 6.80 -39.29 -0.27 4.21 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.09 0.95 8.10 -51.93 -0.42 0.52 16 33 H 0.08 0.87 7.99 -51.93 -0.42 0.45 16 34 H 0.08 0.68 8.10 -51.93 -0.42 0.26 16 35 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 288.35 15.07 4.35 4.35 Total: -1.00 -30.55 288.35 -7.13 -37.67 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -6.05 Total: -2.10 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 0.03 Total: -14.68 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.01 Total: -36.88 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.44 Total: -5.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.55 -7.13 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.806 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds