Wall clock time and date at job start Sun Mar 29 2020 22:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 113.00028 * 2 1 4 4 N 1.46900 * 109.47169 * 309.66443 * 3 2 1 5 5 C 1.46900 * 111.00193 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.47099 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.46994 * 179.97438 * 6 5 4 8 8 C 1.50694 * 109.47286 * 179.97438 * 7 6 5 9 9 H 1.08003 * 119.99751 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00435 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99708 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48505 * 109.47233 * 89.99799 * 12 10 8 14 14 H 1.48497 * 109.46901 * 209.99834 * 12 10 8 15 15 H 1.48498 * 109.46942 * 329.99999 * 12 10 8 16 16 C 1.54033 * 113.81775 * 228.01136 * 2 1 3 17 17 O 1.44180 * 85.51695 * 268.35496 * 16 2 1 18 18 C 1.44179 * 93.34172 * 335.80744 * 17 16 2 19 19 H 1.08998 * 109.47216 * 297.84770 * 1 2 3 20 20 H 1.09002 * 109.46563 * 57.84001 * 1 2 3 21 21 H 1.08994 * 109.47220 * 177.84089 * 1 2 3 22 22 H 1.09005 * 109.47760 * 69.66172 * 3 2 1 23 23 H 1.08994 * 109.47498 * 189.66511 * 3 2 1 24 24 H 1.00900 * 110.99971 * 56.04896 * 4 3 2 25 25 H 1.09007 * 109.46937 * 299.99561 * 5 4 3 26 26 H 1.08998 * 109.47322 * 59.99582 * 5 4 3 27 27 H 1.08998 * 109.46872 * 299.99347 * 6 5 4 28 28 H 1.09000 * 109.46894 * 60.00000 * 6 5 4 29 29 H 1.09005 * 109.47352 * 299.99959 * 7 6 5 30 30 H 1.08998 * 109.47246 * 59.99554 * 7 6 5 31 31 H 0.97001 * 119.99591 * 180.02562 * 11 10 8 32 32 H 1.09003 * 113.86206 * 22.50017 * 16 2 1 33 33 H 1.08990 * 113.86508 * 154.21018 * 16 2 1 34 34 H 1.08993 * 113.86384 * 270.04716 * 18 17 16 35 35 H 1.08999 * 113.98278 * 138.35160 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1279 1.4083 0.0000 4 7 1.5055 2.2045 -1.0662 5 6 2.0566 3.5658 -1.0967 6 6 1.3850 4.3629 -2.2169 7 6 1.9586 5.7809 -2.2483 8 6 1.2977 6.5659 -3.3519 9 1 0.5436 6.1000 -3.9689 10 6 1.6556 7.8787 -3.5740 11 7 2.5736 8.4461 -2.8223 12 14 0.8358 8.8519 -4.9416 13 1 -0.3728 9.5313 -4.4097 14 1 1.7850 9.8674 -5.4640 15 1 0.4435 7.9305 -6.0381 16 6 2.1521 -0.9427 -1.0474 17 8 2.1443 -1.9305 0.0028 18 6 2.1520 -0.9397 1.0502 19 1 -0.3633 0.4800 0.9086 20 1 -0.3632 0.5470 -0.8700 21 1 -0.3633 -1.0269 -0.0387 22 1 1.9411 1.8825 0.9636 23 1 3.2023 1.3470 -0.1725 24 1 0.5017 2.2227 -0.9648 25 1 1.8697 4.0551 -0.1407 26 1 3.1306 3.5191 -1.2771 27 1 1.5716 3.8739 -3.1730 28 1 0.3112 4.4097 -2.0360 29 1 1.7718 6.2698 -1.2921 30 1 3.0326 5.7346 -2.4288 31 1 2.8252 9.3699 -2.9784 32 1 1.4876 -1.1778 -1.8789 33 1 3.1512 -0.6478 -1.3680 34 1 3.1511 -0.6439 1.3700 35 1 1.4883 -1.1707 1.8834 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087197513.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:51 Heat of formation + Delta-G solvation = -54.753443 kcal Electronic energy + Delta-G solvation = -13992.013178 eV Core-core repulsion = 11603.607303 eV Total energy + Delta-G solvation = -2388.405875 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.61849 -37.77492 -35.62238 -33.84862 -31.88914 -28.50209 -27.59662 -27.38064 -25.33652 -23.57205 -21.97240 -19.67602 -18.49227 -17.37457 -17.01777 -16.86616 -16.53695 -16.27889 -15.32413 -15.07931 -14.66945 -14.39001 -13.94398 -13.62800 -13.37371 -13.13088 -12.89811 -12.71622 -12.47786 -12.35776 -12.17167 -11.63302 -11.58892 -11.38398 -11.31489 -10.97702 -10.56620 -10.55019 -9.35380 -8.20033 -6.31073 1.40655 1.42038 1.53437 2.41433 2.79425 3.01928 3.13268 3.50588 3.82183 4.07819 4.18489 4.28749 4.36398 4.44885 4.60073 4.67101 4.69837 4.73021 4.89197 4.92215 5.00009 5.02644 5.11618 5.19783 5.24078 5.24365 5.37506 5.52382 5.75441 5.86264 6.04271 6.27354 6.48133 6.86097 7.38378 8.91946 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.078172 B = 0.004358 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 358.100410 B = 6422.773136 C = 6538.831941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.067 3.933 4 N -0.689 5.689 5 C 0.071 3.929 6 C -0.093 4.093 7 C 0.024 3.976 8 C -0.543 4.543 9 H 0.060 0.940 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.966 3.034 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.048 3.952 17 O -0.407 6.407 18 C 0.043 3.957 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.064 0.936 22 H 0.038 0.962 23 H 0.073 0.927 24 H 0.345 0.655 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.050 0.950 29 H -0.009 1.009 30 H -0.009 1.009 31 H 0.264 0.736 32 H 0.093 0.907 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.904 -16.533 6.923 18.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.121 4.121 3 C -0.062 4.062 4 N -0.321 5.321 5 C -0.058 4.058 6 C -0.131 4.131 7 C -0.014 4.014 8 C -0.581 4.581 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.790 3.210 13 H -0.197 1.197 14 H -0.207 1.207 15 H -0.188 1.188 16 C -0.029 4.029 17 O -0.327 6.327 18 C -0.034 4.034 19 H 0.088 0.912 20 H 0.086 0.914 21 H 0.083 0.917 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.164 0.836 25 H 0.041 0.959 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.394 -16.903 6.463 18.254 hybrid contribution -0.424 1.453 0.192 1.526 sum -2.819 -15.450 6.655 17.057 Atomic orbital electron populations 1.21561 0.91541 1.02726 1.02891 1.23625 0.98041 0.94285 0.96102 1.22010 0.99141 0.92365 0.92685 1.60497 1.10448 1.12748 1.48453 1.21833 0.99181 0.87821 0.96931 1.21373 0.98939 0.94867 0.97872 1.18982 0.94904 0.92314 0.95174 1.21710 1.22184 0.97376 1.16872 0.92223 1.25993 0.95720 0.99101 0.99067 1.70101 1.32553 1.13636 1.41193 0.85438 0.78236 0.78213 0.79110 1.19696 1.20728 1.18752 1.24086 1.00870 0.85770 0.92155 1.89624 1.95879 1.29023 1.18158 1.24209 1.01332 0.85651 0.92226 0.91250 0.91364 0.91661 0.94417 0.90900 0.83577 0.95892 0.92041 0.92883 0.93085 0.99080 0.99055 0.92774 0.88908 0.89917 0.89181 0.87818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.58 71.98 0.62 -1.57 16 2 C -0.12 -2.23 1.21 -51.48 -0.06 -2.29 16 3 C 0.07 1.45 5.23 86.30 0.45 1.90 16 4 N -0.69 -18.33 6.39 -513.88 -3.29 -21.61 16 5 C 0.07 2.39 5.69 86.31 0.49 2.88 16 6 C -0.09 -3.81 5.41 30.60 0.17 -3.64 16 7 C 0.02 1.27 4.97 29.85 0.15 1.42 16 8 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 9 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 10 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 11 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 12 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 13 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 16 C 0.05 0.97 8.36 72.27 0.60 1.58 16 17 O -0.41 -9.29 12.37 -148.98 -1.84 -11.13 16 18 C 0.04 0.73 8.36 72.28 0.60 1.33 16 19 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.07 1.20 6.72 -2.39 -0.02 1.19 16 21 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 22 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 23 H 0.07 1.60 7.99 -2.39 -0.02 1.58 16 24 H 0.34 8.48 6.80 -89.69 -0.61 7.87 16 25 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 26 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 30 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.09 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.08 1.66 7.99 -2.39 -0.02 1.64 16 34 H 0.09 1.34 8.10 -2.39 -0.02 1.32 16 35 H 0.10 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -64.59 288.35 1.33 -63.27 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: 0.43 Total: 9.07 kcal Atomic # 6 Polarization: -32.78 SS G_CDS: 3.71 Total: -29.06 kcal Atomic # 7 Polarization: -75.62 SS G_CDS: -3.00 Total: -78.62 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.84 Total: -11.13 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.59 1.33 -63.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087197513.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.513 kcal (2) G-P(sol) polarization free energy of solvation -64.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds