Wall clock time and date at job start Sun Mar 29 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.52495 * 2 1 4 4 C 1.53113 * 109.52402 * 239.87051 * 2 1 3 5 5 C 1.53039 * 109.28246 * 182.37863 * 4 2 1 6 6 N 1.46846 * 109.52195 * 59.17585 * 5 4 2 7 7 C 1.46896 * 111.00009 * 174.16045 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00096 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.46842 * 111.20246 * 298.26169 * 6 5 4 18 18 C 1.53040 * 109.52316 * 61.74167 * 17 6 5 19 19 H 1.08998 * 109.47319 * 180.12760 * 1 2 3 20 20 H 1.09003 * 109.47237 * 300.12924 * 1 2 3 21 21 H 1.09000 * 109.47090 * 60.12731 * 1 2 3 22 22 H 0.96698 * 114.00183 * 59.86960 * 3 2 1 23 23 H 1.09006 * 109.50561 * 62.43472 * 4 2 1 24 24 H 1.09006 * 109.53605 * 302.33808 * 4 2 1 25 25 H 1.09007 * 109.45964 * 299.16347 * 5 4 2 26 26 H 1.08997 * 109.46289 * 179.19858 * 5 4 2 27 27 H 1.09004 * 109.46774 * 50.00295 * 7 6 5 28 28 H 1.09000 * 109.47723 * 290.00683 * 7 6 5 29 29 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 30 30 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 31 31 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 32 32 H 1.08995 * 109.46673 * 181.75419 * 17 6 5 33 33 H 1.09002 * 109.46312 * 301.72950 * 17 6 5 34 34 H 1.08997 * 109.50368 * 180.88328 * 18 17 6 35 35 H 1.08999 * 109.53625 * 60.78101 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 3.5709 -0.7732 -1.2128 6 7 4.0116 -1.4767 -0.0015 7 6 5.4685 -1.6643 -0.0023 8 6 5.9184 -2.1692 1.3701 9 6 7.4132 -2.3611 1.3694 10 1 7.9851 -2.1442 0.4794 11 6 8.0514 -2.8076 2.5072 12 7 9.3565 -2.9699 2.5083 13 14 7.0623 -3.1822 4.0469 14 1 6.6361 -4.6045 4.0276 15 1 7.9010 -2.9329 5.2468 16 1 5.8636 -2.3067 4.0904 17 6 3.5722 -0.7735 1.2105 18 6 2.0430 -0.7248 1.2475 19 1 -0.3634 -1.0276 0.0023 20 1 -0.3634 0.5158 0.8888 21 1 -0.3633 0.5119 -0.8911 22 1 1.7211 1.8658 0.7640 23 1 1.7152 -0.1885 -2.1395 24 1 1.6456 -1.7397 -1.2684 25 1 3.9666 0.2425 -1.2072 26 1 3.9378 -1.3009 -2.0931 27 1 5.9570 -0.7140 -0.2179 28 1 5.7405 -2.3939 -0.7650 29 1 5.4299 -3.1195 1.5857 30 1 5.6465 -1.4396 2.1328 31 1 9.8054 -3.2843 3.3086 32 1 3.9400 -1.3015 2.0902 33 1 3.9678 0.2421 1.2047 34 1 1.7175 -0.1892 2.1392 35 1 1.6463 -1.7398 1.2675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087781092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:41 Heat of formation + Delta-G solvation = -60.673721 kcal Electronic energy + Delta-G solvation = -14878.621051 eV Core-core repulsion = 12489.958454 eV Total energy + Delta-G solvation = -2388.662598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53288 -36.44835 -33.38945 -32.26431 -30.81052 -30.07374 -27.63830 -24.16436 -23.23666 -21.87987 -19.98779 -19.42524 -16.94042 -16.30205 -15.51221 -14.80357 -14.58731 -14.31285 -14.08019 -13.65582 -13.44672 -12.61682 -12.59814 -12.36074 -11.99939 -11.82449 -11.53067 -11.17039 -11.01204 -10.98257 -10.92516 -10.13792 -10.07545 -9.89652 -9.71186 -9.55659 -9.09143 -8.51790 -7.71274 -6.03142 -4.00921 3.32195 3.38922 3.42274 4.17893 4.46340 4.49496 4.74428 4.81124 4.91973 5.31076 5.37415 5.44909 5.54015 5.64918 5.67969 5.78188 5.84083 5.99327 6.06032 6.10406 6.20242 6.29044 6.32654 6.42768 6.50972 6.78547 7.18416 7.38076 7.61974 7.66600 7.71520 7.88878 8.55274 9.01484 9.59226 11.10406 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051046 B = 0.007218 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.391397 B = 3878.157337 C = 4181.650322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.126 3.874 3 O -0.558 6.558 4 C -0.099 4.099 5 C 0.057 3.943 6 N -0.543 5.543 7 C 0.071 3.929 8 C -0.014 4.014 9 C -0.520 4.520 10 H 0.071 0.929 11 C 0.067 3.933 12 N -0.904 5.904 13 Si 0.881 3.119 14 H -0.276 1.276 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.053 3.947 18 C -0.141 4.141 19 H 0.065 0.935 20 H 0.055 0.945 21 H 0.060 0.940 22 H 0.371 0.629 23 H 0.067 0.933 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.068 0.932 29 H 0.020 0.980 30 H 0.018 0.982 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.742 5.817 -3.541 19.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.085 3.915 3 O -0.364 6.364 4 C -0.136 4.136 5 C -0.071 4.071 6 N -0.268 5.268 7 C -0.056 4.056 8 C -0.051 4.051 9 C -0.559 4.559 10 H 0.089 0.911 11 C -0.134 4.134 12 N -0.543 5.543 13 Si 0.709 3.291 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.191 1.191 17 C -0.075 4.075 18 C -0.179 4.179 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.079 0.921 22 H 0.218 0.782 23 H 0.086 0.914 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.103 0.897 33 H 0.053 0.947 34 H 0.081 0.919 35 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.527 5.099 -3.999 18.687 hybrid contribution -0.256 0.706 1.417 1.604 sum -17.783 5.805 -2.582 18.884 Atomic orbital electron populations 1.22467 0.96141 1.02614 1.02064 1.21286 0.91799 0.82302 0.96079 1.86566 1.77217 1.23329 1.49261 1.21567 0.96287 0.99857 0.95919 1.21964 0.94438 0.97067 0.93649 1.62091 1.14951 1.48511 1.01223 1.22092 0.83643 0.99140 1.00705 1.19714 0.96984 0.96202 0.92248 1.21096 0.90450 1.44535 0.99770 0.91070 1.25003 0.94752 0.94943 0.98702 1.69915 1.08187 1.47070 1.29131 0.86755 0.80385 0.79166 0.82812 1.20222 1.21452 1.19112 1.22082 0.93587 0.97197 0.94626 1.22293 0.97126 1.01510 0.96949 0.91568 0.92581 0.92076 0.78226 0.91450 0.90130 0.94445 0.91228 0.95602 0.91382 0.96200 0.96389 0.92743 0.89705 0.94700 0.91852 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 8.83 37.16 0.33 -1.31 16 2 C 0.13 1.50 0.99 -90.50 -0.09 1.41 16 3 O -0.56 -7.02 11.84 -35.23 -0.42 -7.43 16 4 C -0.10 -1.27 5.11 -26.65 -0.14 -1.40 16 5 C 0.06 0.89 5.29 -3.83 -0.02 0.87 16 6 N -0.54 -9.88 4.81 -234.68 -1.13 -11.01 16 7 C 0.07 1.51 5.21 -3.83 -0.02 1.49 16 8 C -0.01 -0.34 3.29 -27.88 -0.09 -0.44 16 9 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 10 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -28.26 13.96 55.43 0.77 -27.49 16 13 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 16 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 17 C 0.05 0.91 4.71 -3.84 -0.02 0.89 16 18 C -0.14 -1.85 5.09 -26.65 -0.14 -1.98 16 19 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.37 3.30 9.05 45.56 0.41 3.71 16 23 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.63 7.76 -51.92 -0.40 0.23 16 26 H 0.07 1.04 8.12 -51.93 -0.42 0.61 16 27 H 0.03 0.56 8.08 -51.93 -0.42 0.15 16 28 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 29 H 0.02 0.49 7.58 -51.93 -0.39 0.10 16 30 H 0.02 0.44 5.26 -51.93 -0.27 0.17 16 31 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 32 H 0.08 1.59 5.81 -51.93 -0.30 1.29 16 33 H 0.03 0.62 7.76 -51.93 -0.40 0.22 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 273.32 15.07 4.12 4.12 Total: -1.00 -31.72 273.32 -7.11 -38.83 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.17 Total: -0.36 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -0.61 Total: -14.05 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: -0.35 Total: -38.49 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.42 Total: -7.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.72 -7.11 -38.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087781092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.848 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds