Wall clock time and date at job start Sun Mar 29 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.52495 * 2 1 4 4 C 1.53113 * 109.52402 * 239.87051 * 2 1 3 5 5 C 1.53039 * 109.28246 * 182.37863 * 4 2 1 6 6 N 1.46846 * 109.52195 * 59.17585 * 5 4 2 7 7 C 1.46896 * 111.00009 * 174.16045 * 6 5 4 8 8 C 1.52996 * 109.47256 * 170.00096 * 7 6 5 9 9 C 1.50702 * 109.47159 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72211 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 C 1.46842 * 111.20246 * 298.26169 * 6 5 4 18 18 C 1.53040 * 109.52316 * 61.74167 * 17 6 5 19 19 H 1.08998 * 109.47319 * 180.12760 * 1 2 3 20 20 H 1.09003 * 109.47237 * 300.12924 * 1 2 3 21 21 H 1.09000 * 109.47090 * 60.12731 * 1 2 3 22 22 H 0.96698 * 114.00183 * 59.86960 * 3 2 1 23 23 H 1.09006 * 109.50561 * 62.43472 * 4 2 1 24 24 H 1.09006 * 109.53605 * 302.33808 * 4 2 1 25 25 H 1.09007 * 109.45964 * 299.16347 * 5 4 2 26 26 H 1.08997 * 109.46289 * 179.19858 * 5 4 2 27 27 H 1.09004 * 109.46774 * 50.00295 * 7 6 5 28 28 H 1.09000 * 109.47723 * 290.00683 * 7 6 5 29 29 H 1.09004 * 109.47066 * 60.00378 * 8 7 6 30 30 H 1.08994 * 109.47405 * 300.00209 * 8 7 6 31 31 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 32 32 H 1.08995 * 109.46673 * 181.75419 * 17 6 5 33 33 H 1.09002 * 109.46312 * 301.72950 * 17 6 5 34 34 H 1.08997 * 109.50368 * 180.88328 * 18 17 6 35 35 H 1.08999 * 109.53625 * 60.78101 * 18 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0076 1.3468 0.0000 4 6 2.0417 -0.7244 -1.2481 5 6 3.5709 -0.7732 -1.2128 6 7 4.0116 -1.4767 -0.0015 7 6 5.4685 -1.6643 -0.0023 8 6 5.9184 -2.1692 1.3701 9 6 7.4132 -2.3611 1.3694 10 1 7.9851 -2.1442 0.4794 11 6 8.0514 -2.8076 2.5072 12 7 9.3565 -2.9699 2.5083 13 14 7.0623 -3.1822 4.0469 14 1 6.6361 -4.6045 4.0276 15 1 7.9010 -2.9329 5.2468 16 1 5.8636 -2.3067 4.0904 17 6 3.5722 -0.7735 1.2105 18 6 2.0430 -0.7248 1.2475 19 1 -0.3634 -1.0276 0.0023 20 1 -0.3634 0.5158 0.8888 21 1 -0.3633 0.5119 -0.8911 22 1 1.7211 1.8658 0.7640 23 1 1.7152 -0.1885 -2.1395 24 1 1.6456 -1.7397 -1.2684 25 1 3.9666 0.2425 -1.2072 26 1 3.9378 -1.3009 -2.0931 27 1 5.9570 -0.7140 -0.2179 28 1 5.7405 -2.3939 -0.7650 29 1 5.4299 -3.1195 1.5857 30 1 5.6465 -1.4396 2.1328 31 1 9.8054 -3.2843 3.3086 32 1 3.9400 -1.3015 2.0902 33 1 3.9678 0.2421 1.2047 34 1 1.7175 -0.1892 2.1392 35 1 1.6463 -1.7398 1.2675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087781092.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:41 Heat of formation + Delta-G solvation = -84.950938 kcal Electronic energy + Delta-G solvation = -14879.673790 eV Core-core repulsion = 12489.958454 eV Total energy + Delta-G solvation = -2389.715337 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.66261 -37.74910 -35.25001 -33.75267 -32.09600 -31.58414 -28.94536 -25.91494 -24.50212 -23.20883 -21.53786 -20.68101 -19.09044 -17.33567 -16.79060 -16.40177 -16.03712 -15.62564 -15.49264 -15.08057 -14.78992 -14.61997 -13.81109 -13.48218 -13.28852 -12.99618 -12.83879 -12.70320 -12.49249 -12.19920 -12.11785 -11.91541 -11.74602 -11.58151 -11.40050 -11.06525 -10.79647 -10.59122 -9.21012 -8.32083 -6.36936 1.34580 1.36315 1.48364 2.34456 3.00965 3.03100 3.40606 3.79613 3.83616 3.97873 4.20619 4.36138 4.41644 4.52976 4.54989 4.65032 4.75183 4.77506 4.87580 4.92375 4.96070 5.07983 5.11153 5.19827 5.24456 5.33439 5.36112 5.46801 5.59653 6.11569 6.23840 6.31485 6.70483 6.93301 7.27607 8.84868 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051046 B = 0.007218 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.391397 B = 3878.157337 C = 4181.650322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.126 3.874 3 O -0.577 6.577 4 C -0.097 4.097 5 C 0.056 3.944 6 N -0.542 5.542 7 C 0.081 3.919 8 C -0.003 4.003 9 C -0.537 4.537 10 H 0.030 0.970 11 C 0.006 3.994 12 N -0.950 5.950 13 Si 0.953 3.047 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.247 1.247 17 C 0.050 3.950 18 C -0.134 4.134 19 H 0.073 0.927 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.386 0.614 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.268 0.732 32 H 0.066 0.934 33 H 0.022 0.978 34 H 0.086 0.914 35 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.832 5.930 -2.600 21.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.085 3.915 3 O -0.385 6.385 4 C -0.135 4.135 5 C -0.072 4.072 6 N -0.267 5.267 7 C -0.047 4.047 8 C -0.041 4.041 9 C -0.575 4.575 10 H 0.048 0.952 11 C -0.191 4.191 12 N -0.591 5.591 13 Si 0.776 3.224 14 H -0.190 1.190 15 H -0.207 1.207 16 H -0.170 1.170 17 C -0.078 4.078 18 C -0.172 4.172 19 H 0.092 0.908 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.236 0.764 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.029 0.971 28 H 0.080 0.920 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.040 0.960 34 H 0.104 0.896 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.641 5.229 -3.070 21.513 hybrid contribution 0.791 0.713 1.039 1.488 sum -19.851 5.942 -2.030 20.820 Atomic orbital electron populations 1.22370 0.93530 1.03471 1.03062 1.21298 0.93618 0.81825 0.94725 1.86536 1.77805 1.23737 1.50425 1.21602 0.93590 1.00964 0.97333 1.22048 0.96866 0.95767 0.92543 1.62104 1.12195 1.49534 1.02861 1.21824 0.86135 0.98063 0.98689 1.19566 0.93826 0.96447 0.94248 1.21416 0.92824 1.44636 0.98627 0.95185 1.26007 0.95876 0.94521 1.02649 1.70066 1.10283 1.48188 1.30536 0.85612 0.79240 0.79735 0.77784 1.18982 1.20713 1.17042 1.22129 0.96680 0.95849 0.93182 1.22281 0.93688 1.02447 0.98789 0.90769 0.91066 0.91683 0.76441 0.90100 0.89149 0.96054 0.90913 0.97112 0.91956 0.95886 0.95884 0.92354 0.91519 0.95969 0.89573 0.89996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.43 8.83 71.98 0.64 -1.80 16 2 C 0.13 2.62 0.99 -10.71 -0.01 2.61 16 3 O -0.58 -13.08 11.84 -148.98 -1.76 -14.85 16 4 C -0.10 -2.25 5.11 30.65 0.16 -2.10 16 5 C 0.06 1.69 5.29 86.33 0.46 2.15 16 6 N -0.54 -19.31 4.81 -896.38 -4.31 -23.62 16 7 C 0.08 3.49 5.21 86.30 0.45 3.94 16 8 C 0.00 -0.16 3.29 29.85 0.10 -0.07 16 9 C -0.54 -32.17 9.66 25.60 0.25 -31.92 16 10 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 11 C 0.01 0.38 5.47 84.66 0.46 0.85 16 12 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 13 Si 0.95 45.08 27.47 68.60 1.88 46.97 16 14 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.25 -10.81 6.54 99.48 0.65 -10.16 16 17 C 0.05 1.62 4.71 86.33 0.41 2.03 16 18 C -0.13 -3.11 5.09 30.65 0.16 -2.96 16 19 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 20 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 21 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 22 H 0.39 5.80 9.05 -74.06 -0.67 5.13 16 23 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 24 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 25 H 0.02 0.72 7.76 -2.38 -0.02 0.70 16 26 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 27 H 0.01 0.48 8.08 -2.38 -0.02 0.47 16 28 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.02 1.12 7.58 -2.38 -0.02 1.10 16 30 H 0.02 1.11 5.26 -2.39 -0.01 1.10 16 31 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 32 H 0.07 2.40 5.81 -2.39 -0.01 2.39 16 33 H 0.02 0.77 7.76 -2.39 -0.02 0.75 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.26 273.32 -0.50 -69.76 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: 0.32 Total: 9.49 kcal Atomic # 6 Polarization: -30.33 SS G_CDS: 3.06 Total: -27.27 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -4.01 Total: -84.10 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -1.76 Total: -14.85 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.97 kcal Total: -69.26 -0.50 -69.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087781092.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.193 kcal (2) G-P(sol) polarization free energy of solvation -69.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds