Wall clock time and date at job start Sun Mar 29 2020 22:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50699 * 109.44585 * 181.23845 * 8 7 6 10 10 H 1.08005 * 120.00131 * 239.80327 * 9 8 7 11 11 C 1.37878 * 120.00094 * 59.78830 * 9 8 7 12 12 N 1.31516 * 119.99537 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47080 * 60.00179 * 13 11 9 15 15 H 1.48495 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46938 * 300.00333 * 13 11 9 17 17 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 18 18 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 19 19 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 20 20 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 21 21 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 23 23 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 24 24 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 25 25 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 26 26 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 27 27 H 0.97008 * 119.99764 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.49876 * 178.74890 * 17 8 7 29 29 H 1.09005 * 109.52615 * 58.67140 * 17 8 7 30 30 H 1.08998 * 109.58787 * 246.20220 * 18 5 3 31 31 H 1.09007 * 109.58600 * 6.48533 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0229 1.4596 -2.1961 10 1 7.0741 0.6511 -2.9103 11 6 7.8712 2.5400 -2.3159 12 7 7.8089 3.5244 -1.4461 13 14 9.1087 2.6054 -3.7136 14 1 8.3904 2.5674 -5.0128 15 1 9.8961 3.8608 -3.6193 16 1 10.0236 1.4395 -3.6196 17 6 5.2133 0.1129 -1.1659 18 6 4.2229 0.0467 0.0017 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 3.3564 3.3686 -0.1174 23 1 4.6248 2.7042 0.9419 24 1 4.5408 2.5729 -2.1077 25 1 5.6649 3.5333 -1.1155 26 1 6.5514 1.4347 -0.1151 27 1 8.4059 4.2844 -1.5301 28 1 5.8869 -0.7428 -1.1202 29 1 4.6664 0.0954 -2.1087 30 1 4.7699 -0.0274 0.9415 31 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107229159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:40 Heat of formation + Delta-G solvation = -89.445280 kcal Electronic energy + Delta-G solvation = -14668.940335 eV Core-core repulsion = 12143.197014 eV Total energy + Delta-G solvation = -2525.743321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.17582 -37.58880 -35.83624 -33.57412 -31.12827 -30.21720 -27.58495 -25.94962 -23.08091 -22.38190 -20.63186 -18.96245 -17.53992 -16.75796 -16.22113 -16.13035 -14.58500 -14.21590 -13.83609 -13.68707 -13.14525 -12.76662 -12.64494 -12.24663 -11.83966 -11.78684 -11.15744 -10.92467 -10.67738 -10.56363 -10.43999 -10.11827 -10.08489 -9.57373 -9.19596 -8.94835 -8.37676 -8.07979 -6.02151 -4.08716 2.57584 3.20087 3.30625 3.35687 3.38125 4.32518 4.41522 5.23173 5.27504 5.30299 5.49865 5.60369 5.82354 5.86558 6.07248 6.17899 6.38168 6.44467 6.53745 6.66118 6.81031 6.97361 7.17788 7.32609 7.68705 7.85555 7.92631 8.05210 8.40010 8.67114 8.94397 9.56362 11.03445 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063340 B = 0.007392 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.951475 B = 3787.202459 C = 3972.345469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.374 6.374 3 C 0.643 3.357 4 O -0.587 6.587 5 N -0.582 5.582 6 C 0.123 3.877 7 C -0.124 4.124 8 C 0.047 3.953 9 C -0.514 4.514 10 H 0.055 0.945 11 C 0.061 3.939 12 N -0.891 5.891 13 Si 0.892 3.108 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.124 4.124 18 C 0.111 3.889 19 H 0.059 0.941 20 H 0.059 0.941 21 H 0.097 0.903 22 H 0.078 0.922 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.107 0.893 26 H 0.028 0.972 27 H 0.261 0.739 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.821 -6.100 3.190 11.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.288 6.288 3 C 0.397 3.603 4 O -0.477 6.477 5 N -0.321 5.321 6 C 0.003 3.997 7 C -0.162 4.162 8 C 0.029 3.971 9 C -0.552 4.552 10 H 0.073 0.927 11 C -0.140 4.140 12 N -0.530 5.530 13 Si 0.720 3.280 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.162 4.162 18 C -0.011 4.011 19 H 0.077 0.923 20 H 0.078 0.922 21 H 0.115 0.885 22 H 0.097 0.903 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.125 0.875 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.985 -5.641 3.235 11.092 hybrid contribution 0.564 0.115 -0.789 0.976 sum -8.422 -5.526 2.447 10.366 Atomic orbital electron populations 1.23082 0.75445 1.02835 1.02386 1.86236 1.23389 1.31727 1.87497 1.18119 0.83608 0.81751 0.76816 1.90931 1.64486 1.34886 1.57446 1.47209 1.01214 1.09718 1.73975 1.21980 0.95198 0.81625 1.00884 1.22071 0.95487 1.04687 0.93990 1.18657 0.92146 0.88671 0.97654 1.21155 1.17314 1.04893 1.11814 0.92722 1.24967 0.97232 0.95680 0.96096 1.69829 1.38461 1.08988 1.35748 0.86662 0.81351 0.77271 0.82730 1.20347 1.21300 1.20312 1.22031 0.96936 1.01210 0.96059 1.21855 0.93778 0.85386 1.00115 0.92250 0.92177 0.88465 0.90326 0.91807 0.94196 0.87463 0.95341 0.92863 0.91903 0.92855 0.91810 0.90497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.56 101.05 1.07 1.74 16 2 O -0.37 -6.03 9.20 -40.31 -0.37 -6.40 16 3 C 0.64 12.34 8.43 54.06 0.46 12.79 16 4 O -0.59 -12.57 15.55 -19.28 -0.30 -12.87 16 5 N -0.58 -11.17 2.97 -178.53 -0.53 -11.70 16 6 C 0.12 2.50 6.43 -3.71 -0.02 2.47 16 7 C -0.12 -2.87 5.16 -26.59 -0.14 -3.01 16 8 C 0.05 1.13 2.06 -91.72 -0.19 0.94 16 9 C -0.51 -13.68 8.56 -34.44 -0.29 -13.98 16 10 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 11 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 12 N -0.89 -24.70 11.30 55.43 0.63 -24.08 16 13 Si 0.89 20.91 29.54 -169.99 -5.02 15.89 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 17 C -0.12 -2.47 5.31 -26.59 -0.14 -2.61 16 18 C 0.11 1.92 6.45 -3.68 -0.02 1.90 16 19 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 20 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 21 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.08 1.60 7.00 -51.93 -0.36 1.24 16 23 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 24 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.11 2.74 6.03 -51.93 -0.31 2.43 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.19 6.93 -51.92 -0.36 0.83 16 LS Contribution 257.42 15.07 3.88 3.88 Total: -1.00 -29.66 257.42 -5.48 -35.14 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -4.38 Total: -1.69 kcal Atomic # 6 Polarization: 1.20 SS G_CDS: 0.62 Total: 1.82 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: 0.10 Total: -35.77 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.67 Total: -19.27 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.66 -5.48 -35.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107229159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.305 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds