Wall clock time and date at job start Sun Mar 29 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 7 7 C 1.53195 * 108.89273 * 233.51696 * 6 5 3 8 8 C 1.53070 * 109.29524 * 305.57804 * 7 6 5 9 9 C 1.50699 * 109.44585 * 181.23845 * 8 7 6 10 10 H 1.08005 * 120.00131 * 239.80327 * 9 8 7 11 11 C 1.37878 * 120.00094 * 59.78830 * 9 8 7 12 12 N 1.31516 * 119.99537 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00155 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47080 * 60.00179 * 13 11 9 15 15 H 1.48495 * 109.47235 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46938 * 300.00333 * 13 11 9 17 17 C 1.53039 * 109.65812 * 61.15209 * 8 7 6 18 18 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 19 19 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 20 20 H 1.09007 * 109.46800 * 60.00185 * 1 2 3 21 21 H 1.09000 * 109.47322 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.58751 * 353.37646 * 6 5 3 23 23 H 1.08996 * 109.58750 * 113.65831 * 6 5 3 24 24 H 1.08997 * 109.50046 * 65.38734 * 7 6 5 25 25 H 1.09003 * 109.49733 * 185.48713 * 7 6 5 26 26 H 1.09007 * 109.35101 * 301.12962 * 8 7 6 27 27 H 0.97008 * 119.99764 * 179.97438 * 12 11 9 28 28 H 1.09002 * 109.49876 * 178.74890 * 17 8 7 29 29 H 1.09005 * 109.52615 * 58.67140 * 17 8 7 30 30 H 1.08998 * 109.58787 * 246.20220 * 18 5 3 31 31 H 1.09007 * 109.58600 * 6.48533 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.0906 2.5718 0.0011 7 6 5.0846 2.6118 -1.1639 8 6 6.0242 1.4071 -1.0688 9 6 7.0229 1.4596 -2.1961 10 1 7.0741 0.6511 -2.9103 11 6 7.8712 2.5400 -2.3159 12 7 7.8089 3.5244 -1.4461 13 14 9.1087 2.6054 -3.7136 14 1 8.3904 2.5674 -5.0128 15 1 9.8961 3.8608 -3.6193 16 1 10.0236 1.4395 -3.6196 17 6 5.2133 0.1129 -1.1659 18 6 4.2229 0.0467 0.0017 19 1 -0.3633 0.5139 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3634 -1.0276 -0.0005 22 1 3.3564 3.3686 -0.1174 23 1 4.6248 2.7042 0.9419 24 1 4.5408 2.5729 -2.1077 25 1 5.6649 3.5333 -1.1155 26 1 6.5514 1.4347 -0.1151 27 1 8.4059 4.2844 -1.5301 28 1 5.8869 -0.7428 -1.1202 29 1 4.6664 0.0954 -2.1087 30 1 4.7699 -0.0274 0.9415 31 1 3.5757 -0.8227 -0.1140 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107229159.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:39 Heat of formation + Delta-G solvation = -107.814007 kcal Electronic energy + Delta-G solvation = -14669.736863 eV Core-core repulsion = 12143.197014 eV Total energy + Delta-G solvation = -2526.539848 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.61858 -39.13329 -37.29248 -35.42005 -32.97147 -31.85145 -28.82268 -27.62769 -24.80370 -24.01490 -22.20057 -20.59096 -19.05335 -18.43049 -17.94482 -17.49694 -16.53083 -15.67170 -15.22054 -15.02111 -14.90244 -14.50705 -14.22503 -13.77164 -13.41245 -13.02848 -12.89637 -12.78573 -12.48949 -12.16936 -11.96857 -11.76805 -11.67523 -11.42518 -10.98516 -10.82252 -10.39643 -9.68412 -8.06652 -6.20137 1.22157 1.44280 1.44977 1.52303 1.72246 2.45499 2.99635 3.20244 4.11502 4.24580 4.33070 4.39186 4.40100 4.46135 4.59462 4.66574 4.72491 4.90421 4.97986 5.14148 5.19382 5.27813 5.43622 5.50662 5.66599 5.98895 6.11030 6.37844 6.39604 6.90515 7.21259 7.47923 8.96984 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.063340 B = 0.007392 C = 0.007047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.951475 B = 3787.202459 C = 3972.345469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.372 6.372 3 C 0.644 3.356 4 O -0.614 6.614 5 N -0.587 5.587 6 C 0.135 3.865 7 C -0.113 4.113 8 C 0.043 3.957 9 C -0.534 4.534 10 H 0.052 0.948 11 C 0.014 3.986 12 N -0.915 5.915 13 Si 0.951 3.049 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.270 1.270 17 C -0.116 4.116 18 C 0.117 3.883 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.140 0.860 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.023 0.977 25 H 0.080 0.920 26 H 0.008 0.992 27 H 0.261 0.739 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.079 0.921 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.428 -7.588 3.249 12.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.285 6.285 3 C 0.398 3.602 4 O -0.507 6.507 5 N -0.326 5.326 6 C 0.014 3.986 7 C -0.152 4.152 8 C 0.024 3.976 9 C -0.572 4.572 10 H 0.071 0.929 11 C -0.185 4.185 12 N -0.555 5.555 13 Si 0.777 3.223 14 H -0.201 1.201 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.154 4.154 18 C -0.004 4.004 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.158 0.842 22 H 0.093 0.907 23 H 0.091 0.909 24 H 0.042 0.958 25 H 0.098 0.902 26 H 0.026 0.974 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -9.605 -7.166 3.295 12.429 hybrid contribution 0.692 0.543 -0.809 1.195 sum -8.913 -6.623 2.486 11.379 Atomic orbital electron populations 1.23504 0.72939 1.05664 1.02407 1.86240 1.25716 1.29639 1.86907 1.18188 0.83427 0.82321 0.76215 1.90912 1.65080 1.36151 1.58576 1.47191 1.01725 1.09675 1.74054 1.21687 0.94495 0.82605 0.99842 1.21829 0.95573 1.03289 0.94471 1.18646 0.92249 0.90988 0.95674 1.21551 1.18163 1.04876 1.12586 0.92933 1.25694 0.99003 0.95494 0.98263 1.69956 1.39087 1.09341 1.37105 0.85727 0.79268 0.77367 0.79963 1.20124 1.21114 1.19558 1.21891 0.97176 0.99395 0.96936 1.21915 0.93517 0.85474 0.99539 0.91992 0.92501 0.84218 0.90684 0.90920 0.95826 0.90205 0.97376 0.92977 0.90602 0.93688 0.90297 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.00 10.56 113.37 1.20 2.20 16 2 O -0.37 -10.92 9.20 -55.44 -0.51 -11.43 16 3 C 0.64 23.60 8.43 129.79 1.09 24.70 16 4 O -0.61 -25.72 15.55 19.81 0.31 -25.41 16 5 N -0.59 -21.67 2.97 -949.14 -2.82 -24.49 16 6 C 0.13 5.43 6.43 86.36 0.56 5.98 16 7 C -0.11 -5.32 5.16 30.68 0.16 -5.16 16 8 C 0.04 2.05 2.06 -11.50 -0.02 2.03 16 9 C -0.53 -28.55 8.56 25.60 0.22 -28.33 16 10 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 11 C 0.01 0.77 5.30 84.65 0.45 1.22 16 12 N -0.92 -51.48 11.30 21.45 0.24 -51.24 16 13 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 14 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 15 H -0.29 -12.71 7.11 99.48 0.71 -12.01 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 C -0.12 -4.44 5.31 30.69 0.16 -4.28 16 18 C 0.12 3.77 6.45 86.38 0.56 4.33 16 19 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 20 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 21 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 22 H 0.07 3.07 7.00 -2.39 -0.02 3.05 16 23 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 24 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 25 H 0.08 4.21 6.03 -2.39 -0.01 4.19 16 26 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 27 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 28 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 2.83 6.93 -2.38 -0.02 2.82 16 Total: -1.00 -63.10 257.42 4.72 -58.38 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.11 Total: 6.59 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 4.37 Total: 2.68 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -2.58 Total: -75.73 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.20 Total: -36.84 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.10 4.72 -58.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107229159.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.434 kcal (2) G-P(sol) polarization free energy of solvation -63.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds