Wall clock time and date at job start Sun Mar 29 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34635 * 117.00134 * 2 1 4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1 5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1 6 6 C 1.46928 * 120.62829 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77343 * 126.41175 * 6 5 3 8 8 C 1.53039 * 109.31416 * 54.63452 * 7 6 5 9 9 C 1.53070 * 109.65812 * 298.69913 * 8 7 6 10 10 H 1.08997 * 109.38860 * 301.27396 * 9 8 7 11 11 C 1.50703 * 109.62238 * 181.16791 * 9 8 7 12 12 H 1.07999 * 119.99842 * 0.10803 * 11 9 8 13 13 C 1.37877 * 119.99716 * 180.10801 * 11 9 8 14 14 N 1.31506 * 120.00109 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 119.99559 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47160 * 59.99601 * 15 13 11 17 17 H 1.48497 * 109.47116 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47285 * 300.00098 * 15 13 11 19 19 C 1.46919 * 120.63188 * 180.02562 * 5 3 2 20 20 H 1.08997 * 109.47074 * 300.00318 * 1 2 3 21 21 H 1.09001 * 109.46759 * 59.99747 * 1 2 3 22 22 H 1.08995 * 109.47255 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.58787 * 246.20220 * 6 5 3 24 24 H 1.09007 * 109.58600 * 6.48533 * 6 5 3 25 25 H 1.09002 * 109.49529 * 174.58688 * 7 6 5 26 26 H 1.09001 * 109.49774 * 294.68244 * 7 6 5 27 27 H 1.09007 * 109.45640 * 58.65727 * 8 7 6 28 28 H 1.09000 * 109.45893 * 178.62518 * 8 7 6 29 29 H 0.97009 * 119.99883 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.58751 * 353.37646 * 19 5 3 31 31 H 1.08996 * 109.58750 * 113.65831 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.2229 0.0467 0.0017 7 6 5.2133 0.1123 -1.1652 8 6 6.0242 1.4066 -1.0688 9 6 5.0847 2.6112 -1.1646 10 1 4.5409 2.5718 -2.1084 11 6 5.8869 3.8853 -1.0983 12 1 6.9615 3.8422 -0.9996 13 6 5.2489 5.1058 -1.1638 14 7 3.9404 5.1581 -1.2846 15 14 6.2434 6.6850 -1.0824 16 1 7.2063 6.7223 -2.2122 17 1 5.3287 7.8512 -1.1734 18 1 6.9859 6.7367 0.2026 19 6 4.0906 2.5718 0.0011 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 4.7699 -0.0274 0.9415 24 1 3.5757 -0.8227 -0.1140 25 1 5.8870 -0.7434 -1.1191 26 1 4.6665 0.0950 -2.1080 27 1 6.5514 1.4346 -0.1151 28 1 6.7466 1.4441 -1.8842 29 1 3.4915 6.0169 -1.3303 30 1 3.3564 3.3686 -0.1174 31 1 4.6248 2.7042 0.9419 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107414733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:54 Heat of formation + Delta-G solvation = -89.154394 kcal Electronic energy + Delta-G solvation = -14851.537754 eV Core-core repulsion = 12325.807047 eV Total energy + Delta-G solvation = -2525.730707 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.89637 -37.47727 -35.53646 -33.35393 -31.80285 -29.77311 -27.40887 -25.06809 -24.30505 -21.81212 -20.54480 -18.87100 -17.41414 -16.36772 -16.18365 -15.85362 -14.58879 -13.98913 -13.77342 -13.50729 -13.41713 -12.72337 -12.58033 -12.10553 -11.94479 -11.63395 -10.98293 -10.90921 -10.52866 -10.41977 -10.31184 -10.21787 -9.89720 -9.74685 -9.11995 -9.00718 -8.44367 -7.81142 -6.00414 -4.09644 2.84248 3.32516 3.38136 3.39493 3.52536 4.41361 4.56914 5.29413 5.38170 5.47227 5.49624 5.56955 5.68674 5.75040 6.07146 6.24105 6.34382 6.51866 6.65284 6.73557 6.88695 6.97728 7.15607 7.25872 7.63827 7.85608 7.99472 8.22181 8.37454 8.93152 9.02602 9.56050 11.04881 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.037812 B = 0.009799 C = 0.008059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.327982 B = 2856.614513 C = 3473.510373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.382 6.382 3 C 0.637 3.363 4 O -0.569 6.569 5 N -0.587 5.587 6 C 0.114 3.886 7 C -0.134 4.134 8 C -0.112 4.112 9 C 0.040 3.960 10 H 0.030 0.970 11 C -0.521 4.521 12 H 0.059 0.941 13 C 0.062 3.938 14 N -0.881 5.881 15 Si 0.894 3.106 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C 0.125 3.875 20 H 0.058 0.942 21 H 0.059 0.941 22 H 0.094 0.906 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.265 0.735 30 H 0.124 0.876 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 -10.436 2.367 10.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.297 6.297 3 C 0.391 3.609 4 O -0.457 6.457 5 N -0.327 5.327 6 C -0.009 4.009 7 C -0.172 4.172 8 C -0.149 4.149 9 C 0.020 3.980 10 H 0.048 0.952 11 C -0.560 4.560 12 H 0.078 0.922 13 C -0.141 4.141 14 N -0.518 5.518 15 Si 0.722 3.278 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.006 3.994 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.112 0.888 23 H 0.079 0.921 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.142 0.858 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.325 -9.996 2.357 10.530 hybrid contribution 0.346 0.897 0.039 0.962 sum -1.979 -9.099 2.396 9.615 Atomic orbital electron populations 1.23024 0.75824 1.02432 1.02424 1.86197 1.23168 1.32451 1.87887 1.18229 0.83834 0.81610 0.77273 1.90990 1.64140 1.34562 1.56053 1.47547 1.01056 1.09819 1.74252 1.21602 0.93764 0.86908 0.98671 1.21954 0.97954 0.99065 0.98238 1.21641 0.98303 0.94345 1.00647 1.19009 0.92317 0.92170 0.94462 0.95214 1.21035 0.93328 0.90039 1.51601 0.92246 1.25073 0.94956 0.99305 0.94760 1.69877 1.07442 1.25750 1.48721 0.86623 0.79856 0.82716 0.78608 1.20254 1.21253 1.20207 1.22429 0.97146 0.80922 0.98909 0.92357 0.92232 0.88789 0.92077 0.90413 0.92078 0.92146 0.93082 0.92913 0.92521 0.85785 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -6.79 9.20 -40.31 -0.37 -7.16 16 3 C 0.64 13.97 8.43 54.06 0.46 14.43 16 4 O -0.57 -14.49 15.55 -19.28 -0.30 -14.79 16 5 N -0.59 -12.58 2.97 -178.53 -0.53 -13.11 16 6 C 0.11 1.93 6.45 -3.71 -0.02 1.90 16 7 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16 8 C -0.11 -2.24 5.11 -26.67 -0.14 -2.38 16 9 C 0.04 0.99 2.26 -91.61 -0.21 0.78 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.52 -14.12 8.57 -34.44 -0.30 -14.42 16 12 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16 13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 14 N -0.88 -25.76 11.39 55.43 0.63 -25.13 16 15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 C 0.12 3.08 5.40 -3.69 -0.02 3.06 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 24 H 0.08 1.18 6.93 -51.92 -0.36 0.82 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 257.64 15.07 3.88 3.88 Total: -1.00 -31.20 257.64 -5.52 -36.72 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -4.39 Total: -1.07 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: 0.58 Total: 4.46 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.10 Total: -38.24 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.67 Total: -21.95 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -31.20 -5.52 -36.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107414733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.437 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds