Wall clock time and date at job start Sun Mar 29 2020 22:10:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.45198 * 1
3 3 C 1.34635 * 117.00134 * 2 1
4 4 O 1.21510 * 120.00228 * 0.02562 * 3 2 1
5 5 N 1.34784 * 120.00158 * 179.97438 * 3 2 1
6 6 C 1.46928 * 120.62829 * 359.97438 * 5 3 2
7 7 C 1.53191 * 108.77343 * 126.41175 * 6 5 3
8 8 C 1.53039 * 109.31416 * 54.63452 * 7 6 5
9 9 C 1.53070 * 109.65812 * 298.69913 * 8 7 6
10 10 H 1.08997 * 109.38860 * 301.27396 * 9 8 7
11 11 C 1.50703 * 109.62238 * 181.16791 * 9 8 7
12 12 H 1.07999 * 119.99842 * 0.10803 * 11 9 8
13 13 C 1.37877 * 119.99716 * 180.10801 * 11 9 8
14 14 N 1.31506 * 120.00109 * 359.97438 * 13 11 9
15 15 Si 1.86801 * 119.99559 * 180.02562 * 13 11 9
16 16 H 1.48499 * 109.47160 * 59.99601 * 15 13 11
17 17 H 1.48497 * 109.47116 * 179.97438 * 15 13 11
18 18 H 1.48500 * 109.47285 * 300.00098 * 15 13 11
19 19 C 1.46919 * 120.63188 * 180.02562 * 5 3 2
20 20 H 1.08997 * 109.47074 * 300.00318 * 1 2 3
21 21 H 1.09001 * 109.46759 * 59.99747 * 1 2 3
22 22 H 1.08995 * 109.47255 * 179.97438 * 1 2 3
23 23 H 1.08998 * 109.58787 * 246.20220 * 6 5 3
24 24 H 1.09007 * 109.58600 * 6.48533 * 6 5 3
25 25 H 1.09002 * 109.49529 * 174.58688 * 7 6 5
26 26 H 1.09001 * 109.49774 * 294.68244 * 7 6 5
27 27 H 1.09007 * 109.45640 * 58.65727 * 8 7 6
28 28 H 1.09000 * 109.45893 * 178.62518 * 8 7 6
29 29 H 0.97009 * 119.99883 * 179.97438 * 14 13 11
30 30 H 1.09002 * 109.58751 * 353.37646 * 19 5 3
31 31 H 1.08996 * 109.58750 * 113.65831 * 19 5 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4520 0.0000 0.0000
3 6 2.0632 1.1996 0.0000
4 8 1.4015 2.2187 0.0005
5 7 3.4092 1.2701 0.0005
6 6 4.2229 0.0467 0.0017
7 6 5.2133 0.1123 -1.1652
8 6 6.0242 1.4066 -1.0688
9 6 5.0847 2.6112 -1.1646
10 1 4.5409 2.5718 -2.1084
11 6 5.8869 3.8853 -1.0983
12 1 6.9615 3.8422 -0.9996
13 6 5.2489 5.1058 -1.1638
14 7 3.9404 5.1581 -1.2846
15 14 6.2434 6.6850 -1.0824
16 1 7.2063 6.7223 -2.2122
17 1 5.3287 7.8512 -1.1734
18 1 6.9859 6.7367 0.2026
19 6 4.0906 2.5718 0.0011
20 1 -0.3633 0.5139 0.8899
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3633 -1.0276 -0.0005
23 1 4.7699 -0.0274 0.9415
24 1 3.5757 -0.8227 -0.1140
25 1 5.8870 -0.7434 -1.1191
26 1 4.6665 0.0950 -2.1080
27 1 6.5514 1.4346 -0.1151
28 1 6.7466 1.4441 -1.8842
29 1 3.4915 6.0169 -1.3303
30 1 3.3564 3.3686 -0.1174
31 1 4.6248 2.7042 0.9419
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000107414733.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:10:54
Heat of formation + Delta-G solvation = -89.154394 kcal
Electronic energy + Delta-G solvation = -14851.537754 eV
Core-core repulsion = 12325.807047 eV
Total energy + Delta-G solvation = -2525.730707 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-39.89637 -37.47727 -35.53646 -33.35393 -31.80285 -29.77311 -27.40887 -25.06809
-24.30505 -21.81212 -20.54480 -18.87100 -17.41414 -16.36772 -16.18365 -15.85362
-14.58879 -13.98913 -13.77342 -13.50729 -13.41713 -12.72337 -12.58033 -12.10553
-11.94479 -11.63395 -10.98293 -10.90921 -10.52866 -10.41977 -10.31184 -10.21787
-9.89720 -9.74685 -9.11995 -9.00718 -8.44367 -7.81142 -6.00414 -4.09644
2.84248 3.32516 3.38136 3.39493 3.52536 4.41361 4.56914 5.29413
5.38170 5.47227 5.49624 5.56955 5.68674 5.75040 6.07146 6.24105
6.34382 6.51866 6.65284 6.73557 6.88695 6.97728 7.15607 7.25872
7.63827 7.85608 7.99472 8.22181 8.37454 8.93152 9.02602 9.56050
11.04881
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.037812 B = 0.009799 C = 0.008059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 740.327982 B = 2856.614513 C = 3473.510373
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.058 3.942
2 O -0.382 6.382
3 C 0.637 3.363
4 O -0.569 6.569
5 N -0.587 5.587
6 C 0.114 3.886
7 C -0.134 4.134
8 C -0.112 4.112
9 C 0.040 3.960
10 H 0.030 0.970
11 C -0.521 4.521
12 H 0.059 0.941
13 C 0.062 3.938
14 N -0.881 5.881
15 Si 0.894 3.106
16 H -0.277 1.277
17 H -0.287 1.287
18 H -0.277 1.277
19 C 0.125 3.875
20 H 0.058 0.942
21 H 0.059 0.941
22 H 0.094 0.906
23 H 0.061 0.939
24 H 0.077 0.923
25 H 0.061 0.939
26 H 0.060 0.940
27 H 0.050 0.950
28 H 0.052 0.948
29 H 0.265 0.735
30 H 0.124 0.876
31 H 0.047 0.953
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.896 -10.436 2.367 10.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.037 4.037
2 O -0.297 6.297
3 C 0.391 3.609
4 O -0.457 6.457
5 N -0.327 5.327
6 C -0.009 4.009
7 C -0.172 4.172
8 C -0.149 4.149
9 C 0.020 3.980
10 H 0.048 0.952
11 C -0.560 4.560
12 H 0.078 0.922
13 C -0.141 4.141
14 N -0.518 5.518
15 Si 0.722 3.278
16 H -0.203 1.203
17 H -0.213 1.213
18 H -0.202 1.202
19 C 0.006 3.994
20 H 0.076 0.924
21 H 0.078 0.922
22 H 0.112 0.888
23 H 0.079 0.921
24 H 0.096 0.904
25 H 0.079 0.921
26 H 0.079 0.921
27 H 0.069 0.931
28 H 0.071 0.929
29 H 0.075 0.925
30 H 0.142 0.858
31 H 0.065 0.935
Dipole moment (debyes) X Y Z Total
from point charges -2.325 -9.996 2.357 10.530
hybrid contribution 0.346 0.897 0.039 0.962
sum -1.979 -9.099 2.396 9.615
Atomic orbital electron populations
1.23024 0.75824 1.02432 1.02424 1.86197 1.23168 1.32451 1.87887
1.18229 0.83834 0.81610 0.77273 1.90990 1.64140 1.34562 1.56053
1.47547 1.01056 1.09819 1.74252 1.21602 0.93764 0.86908 0.98671
1.21954 0.97954 0.99065 0.98238 1.21641 0.98303 0.94345 1.00647
1.19009 0.92317 0.92170 0.94462 0.95214 1.21035 0.93328 0.90039
1.51601 0.92246 1.25073 0.94956 0.99305 0.94760 1.69877 1.07442
1.25750 1.48721 0.86623 0.79856 0.82716 0.78608 1.20254 1.21253
1.20207 1.22429 0.97146 0.80922 0.98909 0.92357 0.92232 0.88789
0.92077 0.90413 0.92078 0.92146 0.93082 0.92913 0.92521 0.85785
0.93513
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 0.79 10.56 101.05 1.07 1.85 16
2 O -0.38 -6.79 9.20 -40.31 -0.37 -7.16 16
3 C 0.64 13.97 8.43 54.06 0.46 14.43 16
4 O -0.57 -14.49 15.55 -19.28 -0.30 -14.79 16
5 N -0.59 -12.58 2.97 -178.53 -0.53 -13.11 16
6 C 0.11 1.93 6.45 -3.71 -0.02 1.90 16
7 C -0.13 -2.24 6.08 -26.61 -0.16 -2.41 16
8 C -0.11 -2.24 5.11 -26.67 -0.14 -2.38 16
9 C 0.04 0.99 2.26 -91.61 -0.21 0.78 16
10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
11 C -0.52 -14.12 8.57 -34.44 -0.30 -14.42 16
12 H 0.06 1.56 7.75 -52.49 -0.41 1.16 16
13 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16
14 N -0.88 -25.76 11.39 55.43 0.63 -25.13 16
15 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16
16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16
17 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16
18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
19 C 0.12 3.08 5.40 -3.69 -0.02 3.06 16
20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
21 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
22 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16
23 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16
24 H 0.08 1.18 6.93 -51.92 -0.36 0.82 16
25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16
26 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16
27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16
28 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16
29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16
30 H 0.12 3.56 5.12 -51.93 -0.27 3.29 16
31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16
LS Contribution 257.64 15.07 3.88 3.88
Total: -1.00 -31.20 257.64 -5.52 -36.72
By element:
Atomic # 1 Polarization: 3.32 SS G_CDS: -4.39 Total: -1.07 kcal
Atomic # 6 Polarization: 3.87 SS G_CDS: 0.58 Total: 4.46 kcal
Atomic # 7 Polarization: -38.34 SS G_CDS: 0.10 Total: -38.24 kcal
Atomic # 8 Polarization: -21.28 SS G_CDS: -0.67 Total: -21.95 kcal
Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal
Total LS contribution 3.88 Total: 3.88 kcal
Total: -31.20 -5.52 -36.72 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000107414733.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.437 kcal
(2) G-P(sol) polarization free energy of solvation -31.200 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.637 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.518 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.718 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.154 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds