Wall clock time and date at job start Sun Mar 29 2020 22:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34637 * 116.99792 * 2 1 4 4 O 1.21510 * 119.99939 * 359.97438 * 3 2 1 5 5 N 1.34775 * 119.99943 * 180.02562 * 3 2 1 6 6 C 1.46920 * 120.63333 * 359.97438 * 5 3 2 7 7 C 1.53191 * 108.77762 * 233.58747 * 6 5 3 8 8 C 1.53034 * 109.31472 * 305.36157 * 7 6 5 9 9 C 1.53047 * 109.53543 * 61.36661 * 8 7 6 10 10 H 1.08999 * 109.49613 * 58.61724 * 9 8 7 11 11 C 1.50703 * 109.49781 * 178.68278 * 9 8 7 12 12 H 1.08007 * 119.99683 * 35.21563 * 11 9 8 13 13 C 1.37870 * 120.00022 * 214.93800 * 11 9 8 14 14 N 1.31511 * 120.00230 * 184.84084 * 13 11 9 15 15 Si 1.86802 * 119.99971 * 4.83858 * 13 11 9 16 16 H 1.48497 * 109.47055 * 84.79126 * 15 13 11 17 17 H 1.48498 * 109.47102 * 204.79199 * 15 13 11 18 18 H 1.48499 * 109.47155 * 324.79291 * 15 13 11 19 19 C 1.46928 * 120.63018 * 179.97438 * 5 3 2 20 20 H 1.08996 * 109.47424 * 299.99890 * 1 2 3 21 21 H 1.08998 * 109.47138 * 60.00287 * 1 2 3 22 22 H 1.09004 * 109.46836 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.58883 * 113.79774 * 6 5 3 24 24 H 1.09001 * 109.58573 * 353.38113 * 6 5 3 25 25 H 1.09008 * 109.49802 * 185.41015 * 7 6 5 26 26 H 1.09000 * 109.52041 * 65.33373 * 7 6 5 27 27 H 1.09002 * 109.46253 * 301.34938 * 8 7 6 28 28 H 1.08997 * 109.46030 * 181.37962 * 8 7 6 29 29 H 0.97000 * 120.00145 * 180.02562 * 14 13 11 30 30 H 1.08998 * 109.58786 * 6.63042 * 19 5 3 31 31 H 1.09001 * 109.59014 * 246.19838 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4013 2.2187 -0.0005 5 7 3.4091 1.2702 -0.0005 6 6 4.2229 0.0470 -0.0005 7 6 5.2132 0.1136 1.1663 8 6 6.0241 1.4078 1.0687 9 6 5.0823 2.6103 1.1653 10 1 4.5371 2.5705 2.1083 11 6 5.8849 3.8842 1.1017 12 1 6.7660 3.9368 0.4792 13 6 5.4913 4.9843 1.8336 14 7 6.1350 6.1239 1.7056 15 14 4.0436 4.8560 3.0072 16 1 4.5108 4.3263 4.3134 17 1 3.4452 6.2008 3.2038 18 1 3.0241 3.9390 2.4372 19 6 4.0905 2.5720 -0.0011 20 1 -0.3634 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 4.7699 -0.0280 -0.9403 24 1 3.5760 -0.8222 0.1183 25 1 5.8870 -0.7422 1.1210 26 1 4.6668 0.0968 2.1093 27 1 6.5512 1.4351 0.1150 28 1 6.7465 1.4460 1.8840 29 1 5.8583 6.8978 2.2208 30 1 3.3562 3.3688 0.1176 31 1 4.6268 2.7033 -0.9409 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107414735.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:57 Heat of formation + Delta-G solvation = -89.345152 kcal Electronic energy + Delta-G solvation = -14856.183275 eV Core-core repulsion = 12330.444296 eV Total energy + Delta-G solvation = -2525.738979 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.18124 -37.74330 -35.81413 -33.37751 -31.92635 -30.50061 -27.60621 -25.21279 -24.54695 -21.85782 -20.65683 -19.01955 -17.70560 -16.78556 -16.60247 -16.15320 -14.53270 -14.22215 -13.88979 -13.70520 -13.55819 -13.09054 -12.59200 -12.44755 -12.26280 -11.84399 -11.24234 -11.10900 -10.75361 -10.54862 -10.53163 -10.16209 -10.00287 -9.72393 -9.39752 -9.15928 -8.59998 -8.13388 -6.13328 -4.14629 2.57451 3.22916 3.31223 3.40336 3.48930 4.29396 4.41619 5.17862 5.21571 5.30470 5.31940 5.41351 5.52392 5.60192 5.88604 6.05687 6.14541 6.21573 6.40225 6.52020 6.58482 6.67431 6.83067 6.88405 7.25144 7.33348 7.69962 7.85445 8.45273 8.70607 8.92013 9.49925 10.98915 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.032806 B = 0.011202 C = 0.009270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.303225 B = 2498.874463 C = 3019.656598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.378 6.378 3 C 0.639 3.361 4 O -0.578 6.578 5 N -0.589 5.589 6 C 0.115 3.885 7 C -0.138 4.138 8 C -0.105 4.105 9 C 0.005 3.995 10 H 0.035 0.965 11 C -0.515 4.515 12 H 0.077 0.923 13 C 0.076 3.924 14 N -0.894 5.894 15 Si 0.872 3.128 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.259 1.259 19 C 0.127 3.873 20 H 0.059 0.941 21 H 0.059 0.941 22 H 0.097 0.903 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.266 0.734 30 H 0.084 0.916 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.498 -13.635 -2.300 15.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.292 6.292 3 C 0.393 3.607 4 O -0.467 6.467 5 N -0.329 5.329 6 C -0.008 4.008 7 C -0.176 4.176 8 C -0.143 4.143 9 C -0.015 4.015 10 H 0.053 0.947 11 C -0.553 4.553 12 H 0.095 0.905 13 C -0.127 4.127 14 N -0.531 5.531 15 Si 0.699 3.301 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.184 1.184 19 C 0.007 3.993 20 H 0.078 0.922 21 H 0.078 0.922 22 H 0.115 0.885 23 H 0.084 0.916 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.752 -13.137 -2.249 14.941 hybrid contribution -0.901 0.135 0.668 1.130 sum -7.654 -13.002 -1.580 15.170 Atomic orbital electron populations 1.23076 0.75489 1.02737 1.02487 1.86212 1.23403 1.31957 1.87643 1.18224 0.83734 0.81756 0.76978 1.90966 1.64313 1.34836 1.56618 1.47533 1.01187 1.09822 1.74370 1.21654 0.93725 0.86383 0.99054 1.22024 0.98053 0.99502 0.98059 1.21590 0.98098 0.93095 1.01543 1.19502 0.93123 0.95087 0.93790 0.94667 1.20883 1.11688 0.94164 1.28519 0.90516 1.25076 0.96092 0.95049 0.96466 1.69895 1.41082 1.01090 1.40998 0.86920 0.83723 0.77678 0.81801 1.20195 1.21428 1.18382 1.22588 0.95120 0.80532 1.01023 0.92210 0.92188 0.88510 0.91589 0.90112 0.91577 0.92157 0.92608 0.92071 0.92464 0.89741 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.69 10.56 101.05 1.07 1.76 16 2 O -0.38 -6.08 9.20 -40.31 -0.37 -6.45 16 3 C 0.64 12.72 8.43 54.05 0.46 13.18 16 4 O -0.58 -13.39 15.54 -19.28 -0.30 -13.69 16 5 N -0.59 -11.37 2.97 -178.58 -0.53 -11.90 16 6 C 0.11 1.74 6.45 -3.71 -0.02 1.72 16 7 C -0.14 -2.12 6.08 -26.61 -0.16 -2.28 16 8 C -0.11 -1.99 5.15 -26.69 -0.14 -2.13 16 9 C 0.00 0.11 1.91 -91.66 -0.18 -0.07 16 10 H 0.04 0.86 5.30 -51.93 -0.28 0.58 16 11 C -0.51 -14.03 8.86 -34.44 -0.31 -14.33 16 12 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 13 C 0.08 2.18 5.47 -17.82 -0.10 2.09 16 14 N -0.89 -27.04 13.96 55.43 0.77 -26.26 16 15 Si 0.87 22.14 26.99 -169.99 -4.59 17.56 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.26 -6.69 6.82 56.52 0.39 -6.31 16 19 C 0.13 2.79 5.70 -3.73 -0.02 2.77 16 20 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 24 H 0.08 1.09 6.93 -51.93 -0.36 0.73 16 25 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.08 2.09 7.00 -51.93 -0.36 1.73 16 31 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 257.17 15.07 3.88 3.88 Total: -1.00 -32.11 257.17 -4.92 -37.02 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -4.38 Total: -2.86 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 0.60 Total: 2.70 kcal Atomic # 7 Polarization: -38.40 SS G_CDS: 0.24 Total: -38.16 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.67 Total: -20.14 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.59 Total: 17.56 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.11 -4.92 -37.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107414735.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.321 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds