Wall clock time and date at job start Sun Mar 29 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50322 * 2 1 4 4 C 1.53198 * 109.49669 * 239.93269 * 2 1 3 5 5 N 1.46924 * 108.77550 * 185.37904 * 4 2 1 6 6 C 1.34774 * 120.63642 * 233.58987 * 5 4 2 7 7 O 1.21687 * 119.99730 * 354.76124 * 6 5 4 8 8 C 1.46373 * 120.00357 * 174.76095 * 6 5 4 9 9 H 1.08003 * 119.99972 * 5.67352 * 8 6 5 10 10 C 1.40047 * 119.99946 * 185.67283 * 8 6 5 11 11 N 1.30666 * 120.00092 * 359.97438 * 10 8 6 12 12 Si 1.86806 * 119.99744 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47326 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47290 * 119.99957 * 12 10 8 15 15 H 1.48503 * 109.46615 * 239.99827 * 12 10 8 16 16 C 1.46935 * 118.73433 * 53.61322 * 5 4 2 17 17 C 1.53190 * 108.77676 * 306.38511 * 16 5 4 18 18 C 1.53038 * 109.52585 * 120.08191 * 2 1 3 19 19 H 1.09005 * 109.45852 * 301.35504 * 18 2 1 20 20 O 1.42896 * 109.46116 * 61.30726 * 18 2 1 21 21 H 1.08995 * 109.47637 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 300.06724 * 1 2 3 23 23 H 1.09002 * 109.46985 * 60.06101 * 1 2 3 24 24 H 1.09000 * 109.58524 * 65.60010 * 4 2 1 25 25 H 1.08995 * 109.58452 * 305.16797 * 4 2 1 26 26 H 0.97010 * 119.99985 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.58349 * 186.60166 * 16 5 4 28 28 H 1.08996 * 109.70518 * 66.25077 * 16 5 4 29 29 H 1.09003 * 109.50077 * 174.58772 * 17 16 5 30 30 H 1.09000 * 109.49817 * 294.68943 * 17 16 5 31 31 H 0.96700 * 114.00634 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1702 6 6 4.2807 -0.3850 -2.1790 7 8 3.7701 0.0194 -3.2069 8 6 5.7376 -0.3901 -2.0383 9 1 6.1943 -0.8328 -1.1654 10 6 6.5394 0.1789 -3.0356 11 7 5.9870 0.7140 -4.0920 12 14 8.3989 0.1717 -2.8563 13 1 8.7705 -0.4896 -1.5797 14 1 9.0029 -0.5695 -3.9925 15 1 8.9012 1.5692 -2.8539 16 6 4.1058 -1.4256 0.0300 17 6 3.5715 -0.6943 1.2654 18 6 2.0414 -0.7230 1.2481 19 1 1.6588 -0.2246 2.1388 20 8 1.5909 -2.0789 1.2310 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3633 0.5129 -0.8906 24 1 1.7633 -0.1577 -2.1390 25 1 1.6056 -1.7215 -1.2981 26 1 6.5424 1.1078 -4.7829 27 1 5.1901 -1.3230 -0.0148 28 1 3.8408 -2.4813 0.0871 29 1 3.9345 -1.1888 2.1664 30 1 3.9161 0.3398 1.2534 31 1 1.8781 -2.5985 1.9943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126935438.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:30 Heat of formation + Delta-G solvation = -94.184078 kcal Electronic energy + Delta-G solvation = -14906.540813 eV Core-core repulsion = 12380.592002 eV Total energy + Delta-G solvation = -2525.948810 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.10839 -36.72457 -34.31809 -32.64755 -32.48436 -30.26373 -27.11961 -25.50271 -23.96315 -21.76399 -20.04480 -18.85136 -16.67673 -16.42549 -15.69408 -14.69675 -14.42907 -14.38996 -13.75339 -13.53852 -13.19081 -12.53411 -12.24676 -11.81294 -11.54125 -11.43935 -11.24332 -11.03151 -10.81317 -10.64980 -10.44660 -10.28215 -10.13872 -9.77163 -9.44341 -8.84669 -7.53468 -7.12018 -6.17708 -4.62071 3.12878 3.20966 3.24977 4.09960 4.47672 4.59544 4.67035 5.06087 5.18744 5.29797 5.51068 5.75700 5.80346 5.90822 5.98268 6.06682 6.12752 6.18925 6.35921 6.47591 6.54226 6.63775 6.69631 6.92320 7.47632 7.69541 7.87354 8.18309 8.41589 9.04276 9.49843 10.60671 10.79624 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048329 B = 0.009107 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.228345 B = 3073.869589 C = 3462.108923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.079 0.921 4 C 0.132 3.868 5 N -0.641 5.641 6 C 0.559 3.441 7 O -0.579 6.579 8 C -0.545 4.545 9 H 0.073 0.927 10 C 0.087 3.913 11 N -0.769 5.769 12 Si 0.906 3.094 13 H -0.264 1.264 14 H -0.276 1.276 15 H -0.277 1.277 16 C 0.128 3.872 17 C -0.169 4.169 18 C 0.114 3.886 19 H 0.044 0.956 20 O -0.560 6.560 21 H 0.061 0.939 22 H 0.047 0.953 23 H 0.053 0.947 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.267 0.733 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 -2.575 11.466 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.119 4.119 3 H 0.097 0.903 4 C 0.008 3.992 5 N -0.379 5.379 6 C 0.365 3.635 7 O -0.462 6.462 8 C -0.582 4.582 9 H 0.091 0.909 10 C -0.132 4.132 11 N -0.397 5.397 12 Si 0.730 3.270 13 H -0.188 1.188 14 H -0.201 1.201 15 H -0.202 1.202 16 C 0.003 3.997 17 C -0.208 4.208 18 C 0.055 3.945 19 H 0.062 0.938 20 O -0.364 6.364 21 H 0.080 0.920 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.108 0.892 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -4.891 -2.051 10.119 11.424 hybrid contribution 1.237 -0.118 0.828 1.493 sum -3.654 -2.169 10.947 11.742 Atomic orbital electron populations 1.21685 0.94949 1.02080 1.00935 1.21557 0.95676 0.99321 0.95378 0.90294 1.21067 0.82936 0.98895 0.96303 1.48131 1.04244 1.66165 1.19362 1.18257 0.87475 0.76699 0.81112 1.90584 1.75229 1.51766 1.28611 1.21018 0.89660 1.40825 1.06649 0.90916 1.25735 1.00052 0.93250 0.94207 1.70030 1.36112 1.27209 1.06396 0.86350 0.83226 0.78372 0.79015 1.18783 1.20140 1.20205 1.21279 0.99209 0.95095 0.84086 1.22662 0.96275 1.02584 0.99260 1.21747 0.92928 0.82609 0.97172 0.93763 1.86544 1.77721 1.23082 1.49091 0.92032 0.93386 0.92747 0.90249 0.93343 0.92189 0.89152 0.93698 0.91880 0.90840 0.78519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.07 37.15 0.34 -1.64 16 2 C -0.10 -1.69 2.70 -90.50 -0.24 -1.93 16 3 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 4 C 0.13 2.79 5.46 -3.71 -0.02 2.77 16 5 N -0.64 -15.21 2.97 -174.42 -0.52 -15.73 16 6 C 0.56 16.34 7.61 -12.99 -0.10 16.24 16 7 O -0.58 -19.21 14.48 5.20 0.08 -19.14 16 8 C -0.54 -15.47 8.88 -35.63 -0.32 -15.78 16 9 H 0.07 1.88 5.64 -52.48 -0.30 1.59 16 10 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 11 N -0.77 -23.27 11.84 55.55 0.66 -22.62 16 12 Si 0.91 20.18 29.56 -169.99 -5.02 15.15 16 13 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 14 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 C 0.13 2.46 6.11 -3.71 -0.02 2.44 16 17 C -0.17 -2.58 5.80 -26.61 -0.15 -2.73 16 18 C 0.11 1.66 3.19 -26.69 -0.09 1.58 16 19 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 20 O -0.56 -7.82 11.43 -35.23 -0.40 -8.22 16 21 H 0.06 0.89 7.72 -51.93 -0.40 0.48 16 22 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 24 H 0.08 1.87 7.04 -51.93 -0.37 1.50 16 25 H 0.05 1.01 7.81 -51.93 -0.41 0.60 16 26 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 27 H 0.09 1.82 5.30 -51.93 -0.28 1.54 16 28 H 0.04 0.82 7.81 -51.93 -0.41 0.41 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.37 3.50 9.08 45.56 0.41 3.92 16 LS Contribution 253.47 15.07 3.82 3.82 Total: -1.00 -34.69 253.47 -5.50 -40.19 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -3.41 Total: 3.25 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.70 Total: 3.30 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.14 Total: -38.35 kcal Atomic # 8 Polarization: -27.03 SS G_CDS: -0.33 Total: -27.36 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -34.69 -5.50 -40.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126935438.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.995 kcal (2) G-P(sol) polarization free energy of solvation -34.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds