Wall clock time and date at job start Sun Mar 29 2020 21:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.50322 * 2 1 4 4 C 1.53198 * 109.49669 * 239.93269 * 2 1 3 5 5 N 1.46924 * 108.77550 * 185.37904 * 4 2 1 6 6 C 1.34774 * 120.63642 * 233.58987 * 5 4 2 7 7 O 1.21687 * 119.99730 * 354.76124 * 6 5 4 8 8 C 1.46373 * 120.00357 * 174.76095 * 6 5 4 9 9 H 1.08003 * 119.99972 * 5.67352 * 8 6 5 10 10 C 1.40047 * 119.99946 * 185.67283 * 8 6 5 11 11 N 1.30666 * 120.00092 * 359.97438 * 10 8 6 12 12 Si 1.86806 * 119.99744 * 180.02562 * 10 8 6 13 13 H 1.48492 * 109.47326 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47290 * 119.99957 * 12 10 8 15 15 H 1.48503 * 109.46615 * 239.99827 * 12 10 8 16 16 C 1.46935 * 118.73433 * 53.61322 * 5 4 2 17 17 C 1.53190 * 108.77676 * 306.38511 * 16 5 4 18 18 C 1.53038 * 109.52585 * 120.08191 * 2 1 3 19 19 H 1.09005 * 109.45852 * 301.35504 * 18 2 1 20 20 O 1.42896 * 109.46116 * 61.30726 * 18 2 1 21 21 H 1.08995 * 109.47637 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46975 * 300.06724 * 1 2 3 23 23 H 1.09002 * 109.46985 * 60.06101 * 1 2 3 24 24 H 1.09000 * 109.58524 * 65.60010 * 4 2 1 25 25 H 1.08995 * 109.58452 * 305.16797 * 4 2 1 26 26 H 0.97010 * 119.99985 * 180.02562 * 11 10 8 27 27 H 1.09004 * 109.58349 * 186.60166 * 16 5 4 28 28 H 1.08996 * 109.70518 * 66.25077 * 16 5 4 29 29 H 1.09003 * 109.50077 * 174.58772 * 17 16 5 30 30 H 1.09000 * 109.49817 * 294.68943 * 17 16 5 31 31 H 0.96700 * 114.00634 * 180.02562 * 20 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5046 -0.8282 -1.1702 6 6 4.2807 -0.3850 -2.1790 7 8 3.7701 0.0194 -3.2069 8 6 5.7376 -0.3901 -2.0383 9 1 6.1943 -0.8328 -1.1654 10 6 6.5394 0.1789 -3.0356 11 7 5.9870 0.7140 -4.0920 12 14 8.3989 0.1717 -2.8563 13 1 8.7705 -0.4896 -1.5797 14 1 9.0029 -0.5695 -3.9925 15 1 8.9012 1.5692 -2.8539 16 6 4.1058 -1.4256 0.0300 17 6 3.5715 -0.6943 1.2654 18 6 2.0414 -0.7230 1.2481 19 1 1.6588 -0.2246 2.1388 20 8 1.5909 -2.0789 1.2310 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3633 0.5149 0.8894 23 1 -0.3633 0.5129 -0.8906 24 1 1.7633 -0.1577 -2.1390 25 1 1.6056 -1.7215 -1.2981 26 1 6.5424 1.1078 -4.7829 27 1 5.1901 -1.3230 -0.0148 28 1 3.8408 -2.4813 0.0871 29 1 3.9345 -1.1888 2.1664 30 1 3.9161 0.3398 1.2534 31 1 1.8781 -2.5985 1.9943 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126935438.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:30 Heat of formation + Delta-G solvation = -121.513825 kcal Electronic energy + Delta-G solvation = -14907.725919 eV Core-core repulsion = 12380.592002 eV Total energy + Delta-G solvation = -2527.133917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.64693 -38.55235 -35.88721 -34.66100 -34.10686 -31.76282 -29.04297 -27.05921 -25.66937 -23.16375 -21.76995 -20.45500 -18.44303 -17.92073 -17.59927 -16.35840 -16.06307 -15.87800 -15.42609 -14.99962 -14.55947 -14.34873 -13.70507 -13.48189 -13.26360 -13.12343 -12.77611 -12.71519 -12.30913 -12.20569 -11.99672 -11.93150 -11.85229 -11.16803 -10.95644 -10.69456 -9.77678 -9.03918 -8.29727 -6.84487 1.38843 1.39636 1.57402 2.23279 2.45293 2.87077 3.43437 3.61277 3.80720 3.92986 4.09806 4.23046 4.45072 4.54290 4.67206 4.69343 4.86210 4.88273 4.94850 5.02487 5.16643 5.20219 5.31261 5.39458 5.51175 5.78617 6.15229 6.42521 6.87093 7.05564 7.44642 8.46587 8.67219 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.048329 B = 0.009107 C = 0.008086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.228345 B = 3073.869589 C = 3462.108923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 H 0.065 0.935 4 C 0.132 3.868 5 N -0.645 5.645 6 C 0.537 3.463 7 O -0.637 6.637 8 C -0.568 4.568 9 H 0.095 0.905 10 C 0.026 3.974 11 N -0.825 5.825 12 Si 0.998 3.002 13 H -0.243 1.243 14 H -0.270 1.270 15 H -0.268 1.268 16 C 0.121 3.879 17 C -0.161 4.161 18 C 0.123 3.877 19 H 0.081 0.919 20 O -0.573 6.573 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.049 0.951 26 H 0.274 0.726 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.061 0.939 31 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -3.247 14.463 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.084 0.916 4 C 0.009 3.991 5 N -0.381 5.381 6 C 0.343 3.657 7 O -0.525 6.525 8 C -0.604 4.604 9 H 0.113 0.887 10 C -0.189 4.189 11 N -0.455 5.455 12 Si 0.817 3.183 13 H -0.166 1.166 14 H -0.195 1.195 15 H -0.193 1.193 16 C -0.002 4.002 17 C -0.199 4.199 18 C 0.064 3.936 19 H 0.098 0.902 20 O -0.381 6.381 21 H 0.080 0.920 22 H 0.095 0.905 23 H 0.066 0.934 24 H 0.058 0.942 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -4.026 -2.763 13.200 14.074 hybrid contribution 0.877 0.023 -0.094 0.882 sum -3.149 -2.740 13.106 13.754 Atomic orbital electron populations 1.21626 0.92729 1.02426 1.02066 1.21518 0.97516 0.98326 0.94474 0.91635 1.21123 0.81747 0.98915 0.97354 1.48056 1.05101 1.65241 1.19687 1.18760 0.88740 0.76711 0.81508 1.90527 1.76340 1.54417 1.31179 1.21535 0.89780 1.41241 1.07860 0.88697 1.27058 1.06698 0.91930 0.93207 1.70214 1.39040 1.28409 1.07801 0.84969 0.74547 0.78896 0.79867 1.16583 1.19504 1.19285 1.21512 0.98570 0.96128 0.84013 1.22619 0.96969 1.01715 0.98608 1.21627 0.92091 0.83208 0.96697 0.90159 1.86503 1.77794 1.22902 1.50885 0.91998 0.90535 0.93393 0.94187 0.93233 0.91651 0.90329 0.92431 0.87505 0.92014 0.75879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.49 9.07 71.98 0.65 -2.84 16 2 C -0.10 -3.24 2.70 -10.72 -0.03 -3.27 16 3 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 4 C 0.13 5.76 5.46 86.36 0.47 6.23 16 5 N -0.64 -31.27 2.97 -823.98 -2.45 -33.72 16 6 C 0.54 32.73 7.61 86.36 0.66 33.38 16 7 O -0.64 -44.89 14.48 -4.31 -0.06 -44.96 16 8 C -0.57 -32.81 8.88 24.83 0.22 -32.59 16 9 H 0.10 4.87 5.64 -2.91 -0.02 4.85 16 10 C 0.03 1.46 5.50 85.31 0.47 1.92 16 11 N -0.82 -51.77 11.84 21.83 0.26 -51.52 16 12 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 13 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 14 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 16 C 0.12 4.48 6.11 86.36 0.53 5.01 16 17 C -0.16 -4.39 5.80 30.67 0.18 -4.21 16 18 C 0.12 3.13 3.19 30.62 0.10 3.23 16 19 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 20 O -0.57 -13.83 11.43 -148.98 -1.70 -15.53 16 21 H 0.06 1.65 7.72 -2.39 -0.02 1.64 16 22 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 23 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 24 H 0.04 2.02 7.04 -2.39 -0.02 2.00 16 25 H 0.05 2.11 7.81 -2.39 -0.02 2.09 16 26 H 0.27 15.48 8.29 -92.70 -0.77 14.71 16 27 H 0.08 3.07 5.30 -2.38 -0.01 3.06 16 28 H 0.06 1.99 7.81 -2.39 -0.02 1.97 16 29 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.39 5.55 9.08 -74.06 -0.67 4.88 16 Total: -1.00 -79.94 253.47 1.78 -78.16 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: 0.46 Total: 17.34 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: 3.25 Total: 6.88 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.19 Total: -85.24 kcal Atomic # 8 Polarization: -58.72 SS G_CDS: -1.77 Total: -60.48 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -79.94 1.78 -78.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126935438.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.352 kcal (2) G-P(sol) polarization free energy of solvation -79.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds