Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50312 * 2 1 4 4 C 1.53196 * 109.52429 * 239.91620 * 2 1 3 5 5 N 1.46924 * 108.77324 * 185.39978 * 4 2 1 6 6 C 1.34779 * 120.62908 * 233.60543 * 5 4 2 7 7 O 1.21684 * 119.99707 * 354.74316 * 6 5 4 8 8 C 1.46374 * 119.99753 * 174.74003 * 6 5 4 9 9 H 1.07996 * 120.00486 * 5.66939 * 8 6 5 10 10 C 1.40052 * 119.99780 * 185.66493 * 8 6 5 11 11 N 1.30671 * 119.99746 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99894 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47323 * 90.00296 * 12 10 8 14 14 H 1.48503 * 109.47209 * 210.00293 * 12 10 8 15 15 H 1.48501 * 109.47305 * 330.00333 * 12 10 8 16 16 C 1.46925 * 118.73991 * 53.61135 * 5 4 2 17 17 C 1.53192 * 108.77635 * 306.38890 * 16 5 4 18 18 C 1.53037 * 109.30969 * 54.63492 * 17 16 5 19 19 H 1.09001 * 109.46536 * 58.64756 * 18 17 16 20 20 O 1.42900 * 109.45620 * 178.61550 * 18 17 16 21 21 H 1.08994 * 109.46901 * 299.93929 * 1 2 3 22 22 H 1.09004 * 109.46863 * 59.93484 * 1 2 3 23 23 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.58534 * 305.18729 * 4 2 1 25 25 H 1.08997 * 109.58693 * 65.47201 * 4 2 1 26 26 H 0.97007 * 119.99075 * 179.97438 * 11 10 8 27 27 H 1.09004 * 109.59002 * 186.60178 * 16 5 4 28 28 H 1.09007 * 109.59058 * 66.17568 * 16 5 4 29 29 H 1.09000 * 109.49500 * 174.58984 * 17 16 5 30 30 H 1.08999 * 109.49242 * 294.65153 * 17 16 5 31 31 H 0.96697 * 114.00397 * 299.99494 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2494 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3851 -2.1773 7 8 3.7719 0.0191 -3.2055 8 6 5.7388 -0.3898 -2.0354 9 1 6.1950 -0.8321 -1.1622 10 6 6.5412 0.1792 -3.0323 11 7 5.9892 0.7148 -4.0887 12 14 8.4004 0.1726 -2.8517 13 1 8.9526 -1.0640 -3.4610 14 1 8.9689 1.3597 -3.5395 15 1 8.7580 0.2168 -1.4111 16 6 4.1059 -1.4256 0.0317 17 6 3.5708 -0.6940 1.2667 18 6 2.0408 -0.7228 1.2486 19 1 1.6971 -1.7571 1.2354 20 8 1.5386 -0.0692 2.4159 21 1 -0.3633 0.5129 0.8905 22 1 -0.3633 0.5149 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6063 -1.7218 -1.2978 25 1 1.7623 -0.1594 -2.1389 26 1 6.5451 1.1092 -4.7790 27 1 5.1902 -1.3231 -0.0125 28 1 3.8386 -2.4809 0.0878 29 1 3.9334 -1.1885 2.1679 30 1 3.9159 0.3398 1.2550 31 1 1.8218 -0.4752 3.2466 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126935862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = -96.472978 kcal Electronic energy + Delta-G solvation = -14784.762220 eV Core-core repulsion = 12258.714155 eV Total energy + Delta-G solvation = -2526.048064 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.05493 -36.85697 -34.70226 -32.65175 -32.50816 -30.23167 -27.18613 -25.47617 -23.78466 -21.83412 -20.16587 -18.93378 -17.13557 -16.49624 -15.66496 -14.69753 -14.57098 -14.21526 -13.82151 -13.55688 -12.92887 -12.72317 -12.40289 -11.92642 -11.55549 -11.49459 -11.18709 -11.06477 -10.90150 -10.74525 -10.48050 -10.35069 -10.20370 -9.83594 -9.48213 -8.87340 -7.59791 -7.25845 -6.21498 -4.66472 3.12417 3.19258 3.22188 4.06572 4.38060 4.51943 4.59893 5.03689 5.15367 5.37167 5.50375 5.71096 5.75514 5.81840 5.91840 6.02238 6.06326 6.22049 6.34177 6.45246 6.50380 6.56847 6.58501 6.81483 7.43914 7.59694 7.80721 8.11545 8.32996 9.00309 9.41191 10.55754 10.74218 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.008838 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.306830 B = 3167.544844 C = 3585.577504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.098 4.098 3 H 0.076 0.924 4 C 0.128 3.872 5 N -0.644 5.644 6 C 0.559 3.441 7 O -0.577 6.577 8 C -0.545 4.545 9 H 0.073 0.927 10 C 0.087 3.913 11 N -0.768 5.768 12 Si 0.907 3.093 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.265 1.265 16 C 0.124 3.876 17 C -0.166 4.166 18 C 0.113 3.887 19 H 0.050 0.950 20 O -0.569 6.569 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.049 0.951 24 H 0.042 0.958 25 H 0.088 0.912 26 H 0.269 0.731 27 H 0.097 0.903 28 H 0.041 0.959 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.370 0.630 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -3.666 10.613 11.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 H 0.095 0.905 4 C 0.003 3.997 5 N -0.382 5.382 6 C 0.365 3.635 7 O -0.460 6.460 8 C -0.582 4.582 9 H 0.091 0.909 10 C -0.133 4.133 11 N -0.396 5.396 12 Si 0.731 3.269 13 H -0.197 1.197 14 H -0.204 1.204 15 H -0.189 1.189 16 C -0.001 4.001 17 C -0.205 4.205 18 C 0.054 3.946 19 H 0.068 0.932 20 O -0.374 6.374 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.060 0.940 25 H 0.107 0.893 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.060 0.940 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -4.711 -2.952 9.370 10.895 hybrid contribution 1.238 -0.421 0.671 1.470 sum -3.473 -3.373 10.041 11.147 Atomic orbital electron populations 1.21674 0.94868 1.01342 1.01689 1.21547 0.95729 1.00839 0.93641 0.90544 1.21181 0.83113 0.98489 0.96886 1.48226 1.04120 1.66421 1.19438 1.18257 0.87463 0.76686 0.81052 1.90589 1.75181 1.51661 1.28557 1.20972 0.89567 1.40959 1.06654 0.90906 1.25737 1.00139 0.93197 0.94196 1.70017 1.36293 1.26938 1.06383 0.86387 0.83016 0.78272 0.79189 1.19695 1.20428 1.18893 1.21373 1.00072 0.94600 0.84058 1.22689 0.96075 1.02744 0.99023 1.21835 0.92534 0.94858 0.85347 0.93239 1.86516 1.75860 1.59170 1.15894 0.92193 0.92727 0.93192 0.93982 0.89323 0.92060 0.88540 0.94027 0.91842 0.90832 0.78359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.04 37.16 0.34 -1.66 16 2 C -0.10 -1.68 2.62 -90.50 -0.24 -1.92 16 3 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 4 C 0.13 2.57 5.70 -3.71 -0.02 2.55 16 5 N -0.64 -14.83 2.97 -174.42 -0.52 -15.35 16 6 C 0.56 16.06 7.61 -12.99 -0.10 15.96 16 7 O -0.58 -18.84 14.48 5.20 0.08 -18.77 16 8 C -0.54 -15.26 8.88 -35.63 -0.32 -15.57 16 9 H 0.07 1.85 5.64 -52.49 -0.30 1.55 16 10 C 0.09 2.42 5.50 -17.37 -0.10 2.33 16 11 N -0.77 -23.03 11.84 55.55 0.66 -22.37 16 12 Si 0.91 19.99 29.56 -169.99 -5.02 14.97 16 13 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 14 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 16 C 0.12 2.29 6.35 -3.71 -0.02 2.27 16 17 C -0.17 -2.58 5.70 -26.61 -0.15 -2.73 16 18 C 0.11 1.69 2.88 -26.69 -0.08 1.61 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 20 O -0.57 -7.82 12.59 -35.23 -0.44 -8.27 16 21 H 0.06 0.85 7.65 -51.93 -0.40 0.45 16 22 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.09 2.00 7.04 -51.93 -0.37 1.64 16 26 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 27 H 0.10 1.88 5.30 -51.93 -0.28 1.60 16 28 H 0.04 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.37 3.38 9.08 45.56 0.41 3.79 16 LS Contribution 255.19 15.07 3.85 3.85 Total: -1.00 -34.15 255.19 -5.53 -39.68 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.44 Total: 3.43 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -0.69 Total: 2.83 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.14 Total: -37.72 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.37 Total: -27.03 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -34.15 -5.53 -39.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126935862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.791 kcal (2) G-P(sol) polarization free energy of solvation -34.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds