Wall clock time and date at job start Sun Mar 29 2020 21:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.50312 * 2 1 4 4 C 1.53196 * 109.52429 * 239.91620 * 2 1 3 5 5 N 1.46924 * 108.77324 * 185.39978 * 4 2 1 6 6 C 1.34779 * 120.62908 * 233.60543 * 5 4 2 7 7 O 1.21684 * 119.99707 * 354.74316 * 6 5 4 8 8 C 1.46374 * 119.99753 * 174.74003 * 6 5 4 9 9 H 1.07996 * 120.00486 * 5.66939 * 8 6 5 10 10 C 1.40052 * 119.99780 * 185.66493 * 8 6 5 11 11 N 1.30671 * 119.99746 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99894 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47323 * 90.00296 * 12 10 8 14 14 H 1.48503 * 109.47209 * 210.00293 * 12 10 8 15 15 H 1.48501 * 109.47305 * 330.00333 * 12 10 8 16 16 C 1.46925 * 118.73991 * 53.61135 * 5 4 2 17 17 C 1.53192 * 108.77635 * 306.38890 * 16 5 4 18 18 C 1.53037 * 109.30969 * 54.63492 * 17 16 5 19 19 H 1.09001 * 109.46536 * 58.64756 * 18 17 16 20 20 O 1.42900 * 109.45620 * 178.61550 * 18 17 16 21 21 H 1.08994 * 109.46901 * 299.93929 * 1 2 3 22 22 H 1.09004 * 109.46863 * 59.93484 * 1 2 3 23 23 H 1.09001 * 109.47276 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.58534 * 305.18729 * 4 2 1 25 25 H 1.08997 * 109.58693 * 65.47201 * 4 2 1 26 26 H 0.97007 * 119.99075 * 179.97438 * 11 10 8 27 27 H 1.09004 * 109.59002 * 186.60178 * 16 5 4 28 28 H 1.09007 * 109.59058 * 66.17568 * 16 5 4 29 29 H 1.09000 * 109.49500 * 174.58984 * 17 16 5 30 30 H 1.08999 * 109.49242 * 294.65153 * 17 16 5 31 31 H 0.96697 * 114.00397 * 299.99494 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0420 -0.7238 -1.2494 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3851 -2.1773 7 8 3.7719 0.0191 -3.2055 8 6 5.7388 -0.3898 -2.0354 9 1 6.1950 -0.8321 -1.1622 10 6 6.5412 0.1792 -3.0323 11 7 5.9892 0.7148 -4.0887 12 14 8.4004 0.1726 -2.8517 13 1 8.9526 -1.0640 -3.4610 14 1 8.9689 1.3597 -3.5395 15 1 8.7580 0.2168 -1.4111 16 6 4.1059 -1.4256 0.0317 17 6 3.5708 -0.6940 1.2667 18 6 2.0408 -0.7228 1.2486 19 1 1.6971 -1.7571 1.2354 20 8 1.5386 -0.0692 2.4159 21 1 -0.3633 0.5129 0.8905 22 1 -0.3633 0.5149 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6063 -1.7218 -1.2978 25 1 1.7623 -0.1594 -2.1389 26 1 6.5451 1.1092 -4.7790 27 1 5.1902 -1.3231 -0.0125 28 1 3.8386 -2.4809 0.0878 29 1 3.9334 -1.1885 2.1679 30 1 3.9159 0.3398 1.2550 31 1 1.8218 -0.4752 3.2466 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126935862.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:35 Heat of formation + Delta-G solvation = -123.345632 kcal Electronic energy + Delta-G solvation = -14785.927505 eV Core-core repulsion = 12258.714155 eV Total energy + Delta-G solvation = -2527.213350 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60851 -38.58152 -36.28336 -34.67752 -34.07641 -31.75746 -29.05639 -27.06278 -25.40641 -23.23731 -21.83818 -20.58573 -18.49539 -18.25816 -17.63632 -16.38058 -16.10679 -15.79531 -15.47999 -14.88186 -14.48446 -14.24891 -13.85584 -13.68498 -13.27742 -13.04198 -12.75955 -12.59110 -12.53511 -12.28514 -12.13459 -11.97909 -11.88049 -11.16580 -10.94357 -10.73572 -9.79420 -9.13002 -8.30433 -6.85337 1.39142 1.40881 1.55964 2.22800 2.44239 2.81317 3.29457 3.61068 3.74967 3.89036 4.07374 4.22166 4.36006 4.49048 4.60096 4.74053 4.77688 4.84424 4.91770 4.99959 5.11167 5.21207 5.31485 5.39148 5.44573 5.75613 6.13305 6.37883 6.86518 6.97903 7.40294 8.44950 8.66053 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.046400 B = 0.008838 C = 0.007807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.306830 B = 3167.544844 C = 3585.577504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.096 4.096 3 H 0.042 0.958 4 C 0.127 3.873 5 N -0.649 5.649 6 C 0.539 3.461 7 O -0.635 6.635 8 C -0.569 4.569 9 H 0.096 0.904 10 C 0.026 3.974 11 N -0.824 5.824 12 Si 0.997 3.003 13 H -0.261 1.261 14 H -0.275 1.275 15 H -0.246 1.246 16 C 0.117 3.883 17 C -0.157 4.157 18 C 0.122 3.878 19 H 0.074 0.926 20 O -0.577 6.577 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.050 0.950 26 H 0.274 0.726 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.107 0.893 30 H 0.046 0.954 31 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.443 -5.074 13.265 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.115 4.115 3 H 0.061 0.939 4 C 0.003 3.997 5 N -0.385 5.385 6 C 0.345 3.655 7 O -0.522 6.522 8 C -0.605 4.605 9 H 0.114 0.886 10 C -0.189 4.189 11 N -0.454 5.454 12 Si 0.816 3.184 13 H -0.185 1.185 14 H -0.200 1.200 15 H -0.169 1.169 16 C -0.006 4.006 17 C -0.196 4.196 18 C 0.064 3.936 19 H 0.092 0.908 20 O -0.385 6.385 21 H 0.086 0.914 22 H 0.068 0.932 23 H 0.088 0.912 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -3.991 -4.395 12.111 13.488 hybrid contribution 0.918 -0.007 -0.099 0.923 sum -3.074 -4.402 12.012 13.157 Atomic orbital electron populations 1.21616 0.92579 1.02717 1.01876 1.21435 0.97586 0.98756 0.93756 0.93900 1.21269 0.81748 0.99547 0.97118 1.48125 1.05142 1.65523 1.19700 1.18717 0.88676 0.76619 0.81499 1.90533 1.76303 1.54214 1.31164 1.21522 0.89846 1.41316 1.07839 0.88578 1.27049 1.06665 0.91922 0.93242 1.70204 1.39099 1.28293 1.07810 0.85029 0.74578 0.78620 0.80155 1.18511 1.19975 1.16883 1.21625 0.99402 0.96241 0.83365 1.22619 0.96663 1.01190 0.99125 1.21621 0.91774 0.95473 0.84769 0.90797 1.86469 1.75764 1.59660 1.16648 0.91425 0.93165 0.91159 0.91577 0.93141 0.91634 0.89743 0.91209 0.87431 0.93462 0.75592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.55 9.04 71.98 0.65 -2.90 16 2 C -0.10 -3.22 2.62 -10.71 -0.03 -3.24 16 3 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 4 C 0.13 5.17 5.70 86.36 0.49 5.66 16 5 N -0.65 -30.24 2.97 -823.97 -2.45 -32.69 16 6 C 0.54 32.11 7.61 86.36 0.66 32.77 16 7 O -0.63 -43.88 14.48 -4.30 -0.06 -43.94 16 8 C -0.57 -32.37 8.88 24.83 0.22 -32.15 16 9 H 0.10 4.82 5.64 -2.91 -0.02 4.80 16 10 C 0.03 1.46 5.50 85.31 0.47 1.93 16 11 N -0.82 -51.33 11.84 21.84 0.26 -51.07 16 12 Si 1.00 40.96 29.56 68.60 2.03 42.99 16 13 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 14 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 15 H -0.25 -9.24 7.11 99.48 0.71 -8.54 16 16 C 0.12 4.11 6.35 86.36 0.55 4.66 16 17 C -0.16 -4.44 5.70 30.67 0.17 -4.26 16 18 C 0.12 3.27 2.88 30.62 0.09 3.36 16 19 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 20 O -0.58 -13.70 12.59 -148.98 -1.88 -15.58 16 21 H 0.07 1.76 7.65 -2.39 -0.02 1.74 16 22 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 25 H 0.05 2.42 7.04 -2.39 -0.02 2.40 16 26 H 0.27 15.43 8.29 -92.70 -0.77 14.66 16 27 H 0.08 3.16 5.30 -2.38 -0.01 3.15 16 28 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 29 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.39 5.32 9.08 -74.06 -0.67 4.64 16 Total: -1.00 -78.55 255.19 1.63 -76.91 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.46 Total: 17.55 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 3.27 Total: 5.83 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -2.19 Total: -83.76 kcal Atomic # 8 Polarization: -57.58 SS G_CDS: -1.94 Total: -59.52 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -78.55 1.63 -76.91 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126935862.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.431 kcal (2) G-P(sol) polarization free energy of solvation -78.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds