Wall clock time and date at job start Sun Mar 29 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99800 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47234 * 179.97438 * 13 12 11 15 15 O 1.42894 * 112.84896 * 53.80329 * 14 13 12 16 16 C 1.53784 * 113.61269 * 282.49840 * 14 13 12 17 17 C 1.53784 * 87.07784 * 220.01885 * 16 14 13 18 18 C 1.53782 * 87.08340 * 25.43483 * 17 16 14 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 21 21 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 22 22 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 23 23 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 24 24 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 25 25 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 26 26 H 1.00898 * 110.99915 * 303.94815 * 12 11 10 27 27 H 1.08993 * 109.47004 * 300.00108 * 13 12 11 28 28 H 1.09002 * 109.47091 * 59.99861 * 13 12 11 29 29 H 0.96705 * 114.00068 * 309.66326 * 15 14 13 30 30 H 1.09003 * 113.61755 * 334.56659 * 16 14 13 31 31 H 1.08998 * 113.61713 * 105.46917 * 16 14 13 32 32 H 1.09002 * 113.61442 * 270.88237 * 17 16 14 33 33 H 1.09003 * 113.61261 * 139.97891 * 17 16 14 34 34 H 1.08995 * 113.61378 * 220.01834 * 18 17 16 35 35 H 1.09003 * 113.69054 * 89.12547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3951 -0.0018 14 6 2.7594 -8.5310 -0.0031 15 8 3.7093 -8.4225 1.0589 16 6 3.3974 -8.7835 -1.3794 17 6 3.2954 -10.2851 -1.0636 18 6 2.1297 -9.9286 -0.1261 19 1 -0.4851 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6045 0.8894 23 1 2.8719 -3.6044 -0.8905 24 1 0.8533 -5.0451 0.8886 25 1 0.8538 -5.0445 -0.8914 26 1 3.0696 -6.0362 -0.7832 27 1 1.1100 -7.4697 0.8883 28 1 1.1093 -7.4693 -0.8916 29 1 4.1261 -7.5525 1.1265 30 1 2.7718 -8.4696 -2.2150 31 1 4.4229 -8.4226 -1.4582 32 1 4.1676 -10.6824 -0.5444 33 1 2.9979 -10.8919 -1.9189 34 1 2.1319 -10.4921 0.8069 35 1 1.1569 -9.9275 -0.6177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131186151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:58 Heat of formation + Delta-G solvation = -50.145326 kcal Electronic energy + Delta-G solvation = -13985.007103 eV Core-core repulsion = 11596.801051 eV Total energy + Delta-G solvation = -2388.206052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.79280 -36.06250 -34.54654 -33.39799 -31.24692 -27.81583 -25.99988 -25.27769 -22.70211 -21.92618 -20.17404 -19.70149 -16.77279 -16.22975 -15.52661 -15.46712 -15.13573 -14.58451 -14.22447 -13.68944 -13.38506 -12.81477 -12.43606 -12.26706 -12.00416 -11.60846 -11.34211 -11.26341 -11.03421 -10.85676 -10.60802 -10.56515 -10.24393 -9.71469 -9.68697 -9.31810 -9.03424 -8.34897 -8.29272 -5.99514 -4.01670 3.31620 3.38978 3.43474 4.01385 4.16400 4.40591 4.47327 4.64932 4.77979 4.84083 5.33247 5.36493 5.44089 5.50828 5.55571 5.68926 5.72601 5.78141 5.86264 5.91100 6.11908 6.19595 6.28797 6.68171 6.72331 7.11743 7.23965 7.52994 7.68534 7.74771 7.82864 8.00766 8.43871 9.05770 9.62490 11.12009 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.078328 B = 0.004385 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.384579 B = 6384.088616 C = 6500.374204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.107 4.107 11 C 0.060 3.940 12 N -0.693 5.693 13 C 0.038 3.962 14 C 0.115 3.885 15 O -0.542 6.542 16 C -0.170 4.170 17 C -0.134 4.134 18 C -0.129 4.129 19 H 0.260 0.740 20 H 0.014 0.986 21 H 0.016 0.984 22 H 0.056 0.944 23 H 0.045 0.955 24 H 0.068 0.932 25 H 0.025 0.975 26 H 0.337 0.663 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.389 0.611 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.545 -17.624 -2.248 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.145 4.145 11 C -0.068 4.068 12 N -0.324 5.324 13 C -0.092 4.092 14 C 0.073 3.927 15 O -0.349 6.349 16 C -0.208 4.208 17 C -0.171 4.171 18 C -0.167 4.167 19 H 0.069 0.931 20 H 0.032 0.968 21 H 0.034 0.966 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.086 0.914 25 H 0.043 0.957 26 H 0.154 0.846 27 H 0.096 0.904 28 H 0.055 0.945 29 H 0.239 0.761 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.303 -18.109 -1.460 18.671 hybrid contribution 0.141 1.565 -1.062 1.897 sum 4.444 -16.544 -2.522 17.315 Atomic orbital electron populations 1.69976 1.06078 1.26468 1.51101 1.25036 0.94850 0.99301 0.95370 0.86533 0.80141 0.83774 0.77557 1.19710 1.21056 1.20997 1.21294 0.93096 0.91032 1.50253 0.92601 1.19075 0.94034 0.91414 0.97141 1.21629 0.99199 0.92940 1.00727 1.22134 0.94045 0.90614 1.00032 1.60473 1.20825 1.01521 1.49540 1.22526 0.95916 0.89463 1.01252 1.22150 0.89346 0.94223 0.87002 1.86340 1.57806 1.38989 1.51768 1.23648 1.01983 0.97174 0.98009 1.22728 0.98906 0.96238 0.99238 1.23016 0.98185 0.94981 1.00485 0.93084 0.96811 0.96550 0.92491 0.93666 0.91373 0.95672 0.84631 0.90425 0.94462 0.76143 0.89728 0.90872 0.89893 0.91587 0.90608 0.89066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.20 5.41 -26.73 -0.14 -2.35 16 11 C 0.06 1.03 5.69 -3.82 -0.02 1.01 16 12 N -0.69 -9.71 5.79 -113.77 -0.66 -10.37 16 13 C 0.04 0.47 5.28 -3.82 -0.02 0.45 16 14 C 0.11 1.28 1.49 -89.80 -0.13 1.15 16 15 O -0.54 -6.86 13.41 -35.23 -0.47 -7.34 16 16 C -0.17 -1.67 7.27 -25.92 -0.19 -1.86 16 17 C -0.13 -1.22 8.02 -25.92 -0.21 -1.43 16 18 C -0.13 -1.26 7.47 -25.92 -0.19 -1.45 16 19 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 20 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 21 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 22 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 23 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 24 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.34 4.39 8.54 -39.29 -0.34 4.06 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.04 0.44 8.05 -51.93 -0.42 0.02 16 29 H 0.39 4.42 8.38 45.56 0.38 4.80 16 30 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 290.23 15.07 4.37 4.37 Total: -1.00 -30.34 290.23 -7.90 -38.25 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.40 Total: 2.49 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -1.46 Total: -17.72 kcal Atomic # 7 Polarization: -36.90 SS G_CDS: 0.08 Total: -36.83 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: -0.47 Total: -7.34 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.34 -7.90 -38.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131186151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.897 kcal (2) G-P(sol) polarization free energy of solvation -30.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds