Wall clock time and date at job start Sun Mar 29 2020 22:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46902 * 109.46626 * 179.97438 * 11 10 9 13 13 C 1.46905 * 110.99800 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47234 * 179.97438 * 13 12 11 15 15 O 1.42894 * 112.84896 * 53.80329 * 14 13 12 16 16 C 1.53784 * 113.61269 * 282.49840 * 14 13 12 17 17 C 1.53784 * 87.07784 * 220.01885 * 16 14 13 18 18 C 1.53782 * 87.08340 * 25.43483 * 17 16 14 19 19 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 20 20 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 21 21 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 22 22 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 23 23 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 24 24 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 25 25 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 26 26 H 1.00898 * 110.99915 * 303.94815 * 12 11 10 27 27 H 1.08993 * 109.47004 * 300.00108 * 13 12 11 28 28 H 1.09002 * 109.47091 * 59.99861 * 13 12 11 29 29 H 0.96705 * 114.00068 * 309.66326 * 15 14 13 30 30 H 1.09003 * 113.61755 * 334.56659 * 16 14 13 31 31 H 1.08998 * 113.61713 * 105.46917 * 16 14 13 32 32 H 1.09002 * 113.61442 * 270.88237 * 17 16 14 33 33 H 1.09003 * 113.61261 * 139.97891 * 17 16 14 34 34 H 1.08995 * 113.61378 * 220.01834 * 18 17 16 35 35 H 1.09003 * 113.69054 * 89.12547 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4348 -6.1037 -0.0018 13 6 1.7345 -7.3951 -0.0018 14 6 2.7594 -8.5310 -0.0031 15 8 3.7093 -8.4225 1.0589 16 6 3.3974 -8.7835 -1.3794 17 6 3.2954 -10.2851 -1.0636 18 6 2.1297 -9.9286 -0.1261 19 1 -0.4851 0.8400 0.0004 20 1 0.6240 -2.5567 -0.8903 21 1 0.6246 -2.5571 0.8896 22 1 2.8719 -3.6045 0.8894 23 1 2.8719 -3.6044 -0.8905 24 1 0.8533 -5.0451 0.8886 25 1 0.8538 -5.0445 -0.8914 26 1 3.0696 -6.0362 -0.7832 27 1 1.1100 -7.4697 0.8883 28 1 1.1093 -7.4693 -0.8916 29 1 4.1261 -7.5525 1.1265 30 1 2.7718 -8.4696 -2.2150 31 1 4.4229 -8.4226 -1.4582 32 1 4.1676 -10.6824 -0.5444 33 1 2.9979 -10.8919 -1.9189 34 1 2.1319 -10.4921 0.8069 35 1 1.1569 -9.9275 -0.6177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131186151.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:58 Heat of formation + Delta-G solvation = -71.751493 kcal Electronic energy + Delta-G solvation = -13985.944016 eV Core-core repulsion = 11596.801051 eV Total energy + Delta-G solvation = -2389.142966 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65132 -37.44468 -35.50053 -35.28903 -33.05809 -29.29463 -27.10994 -26.53057 -24.25897 -23.02800 -21.92186 -20.53940 -18.52201 -17.64737 -16.71326 -16.58282 -16.38428 -16.02681 -15.37543 -15.20713 -14.60155 -14.18239 -13.74952 -13.61788 -13.36995 -13.15231 -12.83183 -12.51820 -12.46935 -12.27889 -12.05244 -11.76442 -11.54545 -11.47294 -11.25482 -10.93176 -10.56320 -10.50325 -9.46688 -8.20635 -6.31705 1.40392 1.40765 1.54355 2.40999 3.07379 3.12742 3.19419 3.59960 3.85680 3.89891 3.98544 4.22494 4.32465 4.52796 4.56820 4.69407 4.77075 4.78973 4.83935 4.96431 5.03881 5.06007 5.12603 5.23961 5.31281 5.45445 5.51745 5.74132 5.85425 5.95299 6.25864 6.41640 6.85519 6.86174 7.37841 8.91572 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.078328 B = 0.004385 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 357.384579 B = 6384.088616 C = 6500.374204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.092 4.092 11 C 0.073 3.927 12 N -0.689 5.689 13 C 0.041 3.959 14 C 0.107 3.893 15 O -0.556 6.556 16 C -0.166 4.166 17 C -0.129 4.129 18 C -0.129 4.129 19 H 0.264 0.736 20 H -0.009 1.009 21 H -0.010 1.010 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.345 0.655 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.392 0.608 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.574 -18.045 -2.876 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.200 4.200 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.130 4.130 11 C -0.056 4.056 12 N -0.320 5.320 13 C -0.088 4.088 14 C 0.065 3.935 15 O -0.364 6.364 16 C -0.204 4.204 17 C -0.167 4.167 18 C -0.166 4.166 19 H 0.072 0.928 20 H 0.010 0.990 21 H 0.009 0.991 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.163 0.837 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.242 0.758 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.347 -18.552 -2.091 19.420 hybrid contribution -0.207 1.661 -0.859 1.882 sum 5.139 -16.890 -2.950 17.900 Atomic orbital electron populations 1.70103 1.07838 1.27726 1.51845 1.26003 0.95784 1.03451 0.94723 0.85377 0.79094 0.78663 0.77791 1.18533 1.20306 1.20389 1.21737 0.93586 0.92381 1.50327 0.92154 1.18991 0.94492 0.93223 0.94754 1.21372 0.97999 0.92749 1.00878 1.21823 0.93943 0.90133 0.99685 1.60345 1.20237 1.01321 1.50141 1.22549 0.96264 0.88774 1.01252 1.22313 0.89160 0.94419 0.87579 1.86331 1.58159 1.39349 1.52566 1.23639 1.01940 0.97627 0.97195 1.22705 0.98378 0.96023 0.99549 1.23094 0.99168 0.93745 1.00624 0.92771 0.99034 0.99122 0.92762 0.92903 0.92213 0.95680 0.83665 0.91416 0.93411 0.75809 0.88846 0.90966 0.90458 0.89891 0.91183 0.87572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.39 13.29 21.45 0.28 -57.10 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.97 44.52 29.54 68.60 2.03 46.54 16 4 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.02 1.23 4.97 29.85 0.15 1.38 16 10 C -0.09 -3.77 5.41 30.60 0.17 -3.61 16 11 C 0.07 2.47 5.69 86.31 0.49 2.96 16 12 N -0.69 -18.39 5.79 -513.86 -2.98 -21.37 16 13 C 0.04 0.95 5.28 86.30 0.46 1.41 16 14 C 0.11 2.21 1.49 -10.27 -0.02 2.20 16 15 O -0.56 -13.48 13.41 -148.98 -2.00 -15.48 16 16 C -0.17 -2.89 7.27 31.12 0.23 -2.66 16 17 C -0.13 -2.07 8.02 31.12 0.25 -1.82 16 18 C -0.13 -2.26 7.47 31.12 0.23 -2.02 16 19 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 20 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 22 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 23 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 25 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.35 8.37 8.54 -89.70 -0.77 7.60 16 27 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 28 H 0.05 1.03 8.05 -2.39 -0.02 1.01 16 29 H 0.39 8.54 8.38 -74.05 -0.62 7.92 16 30 H 0.09 1.47 8.03 -2.39 -0.02 1.45 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.11 1.53 8.10 -2.39 -0.02 1.51 16 Total: -1.00 -64.28 290.23 -0.35 -64.63 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.33 Total: 15.60 kcal Atomic # 6 Polarization: -35.47 SS G_CDS: 2.65 Total: -32.83 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -2.69 Total: -78.47 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -2.00 Total: -15.48 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -64.28 -0.35 -64.63 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131186151.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.122 kcal (2) G-P(sol) polarization free energy of solvation -64.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds