Wall clock time and date at job start Sun Mar 29 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00378 * 2 1 4 4 O 1.21588 * 119.99727 * 355.03307 * 3 2 1 5 5 N 1.34777 * 120.00346 * 175.02676 * 3 2 1 6 6 C 1.46961 * 120.59098 * 185.18004 * 5 3 2 7 7 C 1.53376 * 108.63417 * 235.24861 * 6 5 3 8 8 N 1.46960 * 108.63610 * 310.58272 * 7 6 5 9 9 C 1.36940 * 120.58941 * 235.20122 * 8 7 6 10 10 H 1.08004 * 119.99629 * 148.22320 * 9 8 7 11 11 C 1.38809 * 120.00439 * 327.94544 * 9 8 7 12 12 N 1.31619 * 119.99293 * 350.24295 * 11 9 8 13 13 Si 1.86791 * 120.00132 * 170.24346 * 11 9 8 14 14 H 1.48501 * 109.47367 * 90.00113 * 13 11 9 15 15 H 1.48495 * 109.47305 * 210.00085 * 13 11 9 16 16 H 1.48503 * 109.47372 * 330.00225 * 13 11 9 17 17 C 1.46962 * 118.81456 * 55.47475 * 8 7 6 18 18 C 1.46960 * 120.59196 * 5.20785 * 5 3 2 19 19 H 1.09003 * 109.46883 * 59.99988 * 1 2 3 20 20 H 1.09006 * 109.46940 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47131 * 299.99727 * 1 2 3 22 22 H 0.97003 * 119.99724 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.60723 * 115.50840 * 6 5 3 24 24 H 1.08996 * 109.75884 * 355.08051 * 6 5 3 25 25 H 1.09000 * 109.60915 * 190.83527 * 7 6 5 26 26 H 1.09000 * 109.74646 * 70.40765 * 7 6 5 27 27 H 0.97007 * 119.99530 * 180.02562 * 12 11 9 28 28 H 1.08994 * 109.60776 * 64.26759 * 17 8 7 29 29 H 1.09002 * 109.61014 * 184.77736 * 17 8 7 30 30 H 1.09000 * 109.61270 * 244.49207 * 18 5 3 31 31 H 1.08997 * 109.61538 * 4.83655 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5344 2.2182 -0.0912 5 7 3.4829 1.1693 0.1012 6 6 4.2222 2.4342 0.2165 7 6 5.2714 2.4922 -0.9007 8 7 6.0238 1.2298 -0.9043 9 6 7.3894 1.2321 -0.8025 10 1 7.8955 0.4156 -0.3089 11 6 8.1237 2.2810 -1.3387 12 7 7.5338 3.1715 -2.1078 13 14 9.9486 2.4287 -0.9687 14 1 10.7236 1.6883 -1.9966 15 1 10.3432 3.8601 -0.9872 16 1 10.2300 1.8549 0.3718 17 6 5.2849 -0.0348 -1.0253 18 6 4.2353 -0.0931 0.0975 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.9500 -0.8401 -0.0004 23 1 4.7175 2.4813 1.1864 24 1 3.5341 3.2736 0.1161 25 1 5.9527 3.3236 -0.7198 26 1 4.7776 2.6265 -1.8631 27 1 8.0470 3.9043 -2.4828 28 1 4.7897 -0.0777 -1.9953 29 1 5.9751 -0.8726 -0.9268 30 1 4.7315 -0.2260 1.0589 31 1 3.5536 -0.9248 -0.0803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000149142219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:16 Heat of formation + Delta-G solvation = 8.313410 kcal Electronic energy + Delta-G solvation = -14769.837541 eV Core-core repulsion = 12280.626107 eV Total energy + Delta-G solvation = -2489.211435 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.78391 -36.86350 -34.37276 -33.77122 -31.14564 -30.19995 -27.37276 -25.80520 -23.54787 -22.63679 -20.67671 -19.18844 -18.10093 -16.31340 -15.83962 -15.24617 -14.80887 -14.10652 -13.74758 -13.58625 -13.53671 -13.20468 -13.08211 -12.18699 -12.15658 -11.70821 -11.12103 -10.84155 -10.67596 -10.58067 -10.18895 -9.99966 -9.84881 -9.59332 -8.94914 -8.56217 -8.09021 -6.62577 -5.82059 -3.33960 3.10645 3.34662 3.41580 3.43197 3.61054 4.27996 4.44665 5.20786 5.27384 5.36172 5.60482 5.74494 5.78285 5.82280 5.88303 6.15279 6.36273 6.44465 6.54936 6.69146 6.73319 6.88894 7.30762 7.38494 7.66229 7.73835 8.34626 8.41741 8.99274 9.15575 9.75994 10.34910 11.24576 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070367 B = 0.007692 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.819968 B = 3639.310710 C = 3860.110420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.758 5.758 3 C 0.701 3.299 4 O -0.601 6.601 5 N -0.616 5.616 6 C 0.104 3.896 7 C 0.158 3.842 8 N -0.591 5.591 9 C -0.258 4.258 10 H 0.066 0.934 11 C 0.005 3.995 12 N -0.903 5.903 13 Si 0.907 3.093 14 H -0.286 1.286 15 H -0.289 1.289 16 H -0.279 1.279 17 C 0.131 3.869 18 C 0.096 3.904 19 H 0.055 0.945 20 H 0.069 0.931 21 H 0.053 0.947 22 H 0.395 0.605 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.023 0.977 27 H 0.256 0.744 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.353 -7.602 4.532 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.417 5.417 3 C 0.403 3.597 4 O -0.481 6.481 5 N -0.352 5.352 6 C -0.020 4.020 7 C 0.032 3.968 8 N -0.314 5.314 9 C -0.387 4.387 10 H 0.083 0.917 11 C -0.194 4.194 12 N -0.547 5.547 13 Si 0.737 3.263 14 H -0.213 1.213 15 H -0.215 1.215 16 H -0.204 1.204 17 C 0.004 3.996 18 C -0.029 4.029 19 H 0.073 0.927 20 H 0.088 0.912 21 H 0.071 0.929 22 H 0.231 0.769 23 H 0.075 0.925 24 H 0.099 0.901 25 H 0.119 0.881 26 H 0.041 0.959 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.701 -6.665 4.399 11.811 hybrid contribution 1.162 -0.393 0.057 1.228 sum -7.539 -7.058 4.456 11.248 Atomic orbital electron populations 1.21296 0.79002 1.01293 1.01912 1.45109 1.07295 1.07561 1.81714 1.15928 0.81920 0.83907 0.77961 1.90858 1.67849 1.30660 1.58729 1.47264 1.03413 1.08669 1.75870 1.22397 0.94618 0.84132 1.00875 1.21234 0.91578 0.90823 0.93184 1.43951 1.02622 0.99651 1.85212 1.19173 0.81455 1.07742 1.30368 0.91672 1.25229 0.98097 0.99279 0.96760 1.69959 1.35343 1.15698 1.33700 0.86231 0.84961 0.77049 0.78097 1.21310 1.21505 1.20395 1.21364 0.93002 0.91134 0.94130 1.22314 0.94787 0.84483 1.01360 0.92659 0.91184 0.92862 0.76911 0.92511 0.90125 0.88085 0.95906 0.93398 0.95952 0.91583 0.91719 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.25 10.71 59.85 0.64 1.89 16 2 N -0.76 -10.66 5.62 -72.07 -0.41 -11.07 16 3 C 0.70 13.30 8.29 -86.92 -0.72 12.58 16 4 O -0.60 -13.54 15.77 5.29 0.08 -13.45 16 5 N -0.62 -11.77 2.95 -177.94 -0.52 -12.30 16 6 C 0.10 2.18 6.59 -3.60 -0.02 2.16 16 7 C 0.16 3.87 5.45 -3.60 -0.02 3.85 16 8 N -0.59 -14.65 2.95 -171.77 -0.51 -15.16 16 9 C -0.26 -6.90 9.57 -15.06 -0.14 -7.04 16 10 H 0.07 1.69 7.85 -52.48 -0.41 1.28 16 11 C 0.01 0.15 5.07 -17.43 -0.09 0.06 16 12 N -0.90 -26.01 11.01 55.49 0.61 -25.40 16 13 Si 0.91 21.27 29.56 -169.99 -5.03 16.25 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 C 0.13 2.63 6.70 -3.37 -0.02 2.61 16 18 C 0.10 1.58 6.58 -3.37 -0.02 1.56 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 21 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.40 4.51 6.30 -40.82 -0.26 4.25 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 24 H 0.08 1.72 7.00 -51.93 -0.36 1.36 16 25 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.78 5.61 -51.93 -0.29 0.49 16 LS Contribution 254.19 15.07 3.83 3.83 Total: -1.00 -32.36 254.19 -6.48 -38.84 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.14 Total: 0.80 kcal Atomic # 6 Polarization: 18.07 SS G_CDS: -0.40 Total: 17.67 kcal Atomic # 7 Polarization: -63.10 SS G_CDS: -0.83 Total: -63.92 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.45 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -32.36 -6.48 -38.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149142219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.151 kcal (2) G-P(sol) polarization free energy of solvation -32.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds