Wall clock time and date at job start Sun Mar 29 2020 22:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00378 * 2 1 4 4 O 1.21588 * 119.99727 * 355.03307 * 3 2 1 5 5 N 1.34777 * 120.00346 * 175.02676 * 3 2 1 6 6 C 1.46961 * 120.59098 * 185.18004 * 5 3 2 7 7 C 1.53376 * 108.63417 * 235.24861 * 6 5 3 8 8 N 1.46960 * 108.63610 * 310.58272 * 7 6 5 9 9 C 1.36940 * 120.58941 * 235.20122 * 8 7 6 10 10 H 1.08004 * 119.99629 * 148.22320 * 9 8 7 11 11 C 1.38809 * 120.00439 * 327.94544 * 9 8 7 12 12 N 1.31619 * 119.99293 * 350.24295 * 11 9 8 13 13 Si 1.86791 * 120.00132 * 170.24346 * 11 9 8 14 14 H 1.48501 * 109.47367 * 90.00113 * 13 11 9 15 15 H 1.48495 * 109.47305 * 210.00085 * 13 11 9 16 16 H 1.48503 * 109.47372 * 330.00225 * 13 11 9 17 17 C 1.46962 * 118.81456 * 55.47475 * 8 7 6 18 18 C 1.46960 * 120.59196 * 5.20785 * 5 3 2 19 19 H 1.09003 * 109.46883 * 59.99988 * 1 2 3 20 20 H 1.09006 * 109.46940 * 179.97438 * 1 2 3 21 21 H 1.08994 * 109.47131 * 299.99727 * 1 2 3 22 22 H 0.97003 * 119.99724 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.60723 * 115.50840 * 6 5 3 24 24 H 1.08996 * 109.75884 * 355.08051 * 6 5 3 25 25 H 1.09000 * 109.60915 * 190.83527 * 7 6 5 26 26 H 1.09000 * 109.74646 * 70.40765 * 7 6 5 27 27 H 0.97007 * 119.99530 * 180.02562 * 12 11 9 28 28 H 1.08994 * 109.60776 * 64.26759 * 17 8 7 29 29 H 1.09002 * 109.61014 * 184.77736 * 17 8 7 30 30 H 1.09000 * 109.61270 * 244.49207 * 18 5 3 31 31 H 1.08997 * 109.61538 * 4.83655 * 18 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5344 2.2182 -0.0912 5 7 3.4829 1.1693 0.1012 6 6 4.2222 2.4342 0.2165 7 6 5.2714 2.4922 -0.9007 8 7 6.0238 1.2298 -0.9043 9 6 7.3894 1.2321 -0.8025 10 1 7.8955 0.4156 -0.3089 11 6 8.1237 2.2810 -1.3387 12 7 7.5338 3.1715 -2.1078 13 14 9.9486 2.4287 -0.9687 14 1 10.7236 1.6883 -1.9966 15 1 10.3432 3.8601 -0.9872 16 1 10.2300 1.8549 0.3718 17 6 5.2849 -0.0348 -1.0253 18 6 4.2353 -0.0931 0.0975 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.9500 -0.8401 -0.0004 23 1 4.7175 2.4813 1.1864 24 1 3.5341 3.2736 0.1161 25 1 5.9527 3.3236 -0.7198 26 1 4.7776 2.6265 -1.8631 27 1 8.0470 3.9043 -2.4828 28 1 4.7897 -0.0777 -1.9953 29 1 5.9751 -0.8726 -0.9268 30 1 4.7315 -0.2260 1.0589 31 1 3.5536 -0.9248 -0.0803 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000149142219.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:16 Heat of formation + Delta-G solvation = -15.232287 kcal Electronic energy + Delta-G solvation = -14770.858559 eV Core-core repulsion = 12280.626107 eV Total energy + Delta-G solvation = -2490.232453 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.26307 -38.54450 -35.78463 -35.45502 -33.03701 -31.88427 -28.97053 -27.19492 -25.30423 -24.30392 -22.32224 -20.69074 -19.67859 -18.15752 -17.26349 -16.83498 -16.57346 -15.56576 -15.46336 -15.15622 -15.11204 -14.92747 -14.54488 -13.61660 -13.42162 -13.04695 -12.98103 -12.66477 -12.44471 -12.30261 -12.01105 -11.89866 -11.68579 -11.19362 -10.61181 -10.25775 -9.61972 -8.58989 -7.86231 -5.42291 1.49428 1.50678 1.60116 1.74875 2.13786 2.51340 3.02314 3.29737 3.61792 4.22015 4.27514 4.31468 4.48373 4.54752 4.66522 4.70576 4.82804 4.86057 4.98180 5.07537 5.24909 5.49598 5.54032 5.62350 5.68178 6.05906 6.39026 7.01541 7.11540 7.57092 7.79159 8.34457 9.18250 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.070367 B = 0.007692 C = 0.007252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.819968 B = 3639.310710 C = 3860.110420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.740 5.740 3 C 0.695 3.305 4 O -0.643 6.643 5 N -0.622 5.622 6 C 0.120 3.880 7 C 0.171 3.829 8 N -0.610 5.610 9 C -0.264 4.264 10 H 0.076 0.924 11 C -0.051 4.051 12 N -0.940 5.940 13 Si 0.974 3.026 14 H -0.284 1.284 15 H -0.296 1.296 16 H -0.265 1.265 17 C 0.126 3.874 18 C 0.105 3.895 19 H 0.042 0.958 20 H 0.117 0.883 21 H 0.048 0.952 22 H 0.411 0.589 23 H 0.065 0.935 24 H 0.072 0.928 25 H 0.072 0.928 26 H -0.012 1.012 27 H 0.251 0.749 28 H 0.012 0.988 29 H 0.082 0.918 30 H 0.076 0.924 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.724 -9.986 5.723 14.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.399 5.399 3 C 0.396 3.604 4 O -0.526 6.526 5 N -0.358 5.358 6 C -0.006 4.006 7 C 0.044 3.956 8 N -0.334 5.334 9 C -0.394 4.394 10 H 0.094 0.906 11 C -0.246 4.246 12 N -0.586 5.586 13 Si 0.802 3.198 14 H -0.211 1.211 15 H -0.223 1.223 16 H -0.190 1.190 17 C -0.001 4.001 18 C -0.019 4.019 19 H 0.061 0.939 20 H 0.136 0.864 21 H 0.067 0.933 22 H 0.250 0.750 23 H 0.084 0.916 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.006 0.994 27 H 0.060 0.940 28 H 0.030 0.970 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.098 -9.141 5.607 14.063 hybrid contribution 1.205 0.274 -0.342 1.283 sum -7.892 -8.866 5.265 12.986 Atomic orbital electron populations 1.21549 0.77071 1.04177 1.01096 1.45022 1.08404 1.06518 1.79906 1.16175 0.81725 0.84728 0.77760 1.90831 1.68605 1.32642 1.60502 1.47262 1.03846 1.08668 1.76035 1.21981 0.93603 0.85413 0.99565 1.20901 0.91557 0.90442 0.92724 1.44210 1.02586 1.01078 1.85481 1.19580 0.82602 1.07656 1.29515 0.90643 1.26030 1.02287 0.99293 0.97032 1.70142 1.36765 1.16376 1.35318 0.85178 0.79908 0.76410 0.78325 1.21113 1.22260 1.18991 1.21579 0.93890 0.89494 0.95104 1.22337 0.94568 0.84657 1.00292 0.93924 0.86426 0.93313 0.75039 0.91641 0.90990 0.91019 0.99378 0.94033 0.97008 0.89928 0.90546 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.04 10.71 127.77 1.37 3.41 16 2 N -0.74 -18.35 5.62 -500.19 -2.81 -21.17 16 3 C 0.69 25.19 8.29 179.05 1.49 26.67 16 4 O -0.64 -28.76 15.77 -3.99 -0.06 -28.82 16 5 N -0.62 -22.80 2.95 -835.15 -2.46 -25.26 16 6 C 0.12 5.05 6.59 86.42 0.57 5.62 16 7 C 0.17 8.61 5.45 86.42 0.47 9.08 16 8 N -0.61 -30.14 2.95 -697.35 -2.06 -32.20 16 9 C -0.26 -14.00 9.57 84.03 0.80 -13.19 16 10 H 0.08 3.79 7.85 -2.91 -0.02 3.76 16 11 C -0.05 -2.81 5.07 84.86 0.43 -2.38 16 12 N -0.94 -55.79 11.01 21.65 0.24 -55.55 16 13 Si 0.97 43.92 29.56 68.60 2.03 45.95 16 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 15 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 C 0.13 4.81 6.70 86.57 0.58 5.39 16 18 C 0.11 3.14 6.58 86.57 0.57 3.71 16 19 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 20 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16 21 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.41 7.43 6.30 -92.71 -0.58 6.85 16 23 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 24 H 0.07 3.15 7.00 -2.39 -0.02 3.13 16 25 H 0.07 4.02 6.03 -2.39 -0.01 4.01 16 26 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 27 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.08 2.87 7.93 -2.39 -0.02 2.85 16 30 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.11 2.21 5.61 -2.39 -0.01 2.20 16 Total: -1.00 -71.66 254.19 1.69 -69.96 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.54 Total: 8.78 kcal Atomic # 6 Polarization: 32.03 SS G_CDS: 6.28 Total: 38.31 kcal Atomic # 7 Polarization: -127.08 SS G_CDS: -7.09 Total: -134.17 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -0.06 Total: -28.82 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -71.66 1.69 -69.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000149142219.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.732 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds