Wall clock time and date at job start Sun Mar 29 2020 21:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.47000 * 2 1 4 4 N 1.46507 * 109.46893 * 240.00742 * 2 1 3 5 5 C 1.34774 * 119.99686 * 84.99649 * 4 2 1 6 6 O 1.21683 * 120.00444 * 0.02562 * 5 4 2 7 7 C 1.46382 * 119.99501 * 180.02562 * 5 4 2 8 8 H 1.08002 * 119.99760 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99800 * 180.27774 * 7 5 4 10 10 N 1.30674 * 120.00002 * 359.72267 * 9 7 5 11 11 Si 1.86801 * 119.99850 * 179.72342 * 9 7 5 12 12 H 1.48501 * 109.46896 * 89.99928 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00088 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99888 * 11 9 7 15 15 C 1.52994 * 109.47498 * 120.00646 * 2 1 3 16 16 H 1.08998 * 110.43584 * 58.90236 * 15 2 1 17 17 C 1.54813 * 110.48630 * 296.22276 * 15 2 1 18 18 C 1.55002 * 102.09087 * 220.44057 * 17 15 2 19 19 O 1.44386 * 103.48637 * 37.02187 * 18 17 15 20 20 C 1.43740 * 106.97813 * 319.94042 * 19 18 17 21 21 H 1.09001 * 109.47180 * 59.99517 * 1 2 3 22 22 H 1.08993 * 109.46744 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46645 * 299.99312 * 1 2 3 24 24 H 0.97000 * 119.99595 * 265.00030 * 4 2 1 25 25 H 0.96995 * 119.99831 * 179.97438 * 10 9 7 26 26 H 1.09001 * 110.90731 * 338.63320 * 17 15 2 27 27 H 1.08997 * 110.91365 * 102.24614 * 17 15 2 28 28 H 1.08998 * 110.61901 * 278.52039 * 18 17 15 29 29 H 1.08997 * 110.61859 * 155.51726 * 18 17 15 30 30 H 1.08999 * 109.87351 * 267.09180 * 20 19 18 31 31 H 1.09000 * 109.87987 * 145.94247 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8580 1.1628 -2.4116 7 6 2.6343 -0.7081 -3.5526 8 1 2.8912 -1.7560 -3.5042 9 6 2.7735 -0.0079 -4.7575 10 7 2.4631 1.2601 -4.8159 11 14 3.4027 -0.8866 -6.2810 12 1 2.2559 -1.4569 -7.0326 13 1 4.1296 0.0785 -7.1444 14 1 4.3229 -1.9800 -5.8773 15 6 2.0401 -0.7213 1.2491 16 1 1.6697 -1.7461 1.2747 17 6 1.6166 0.0429 2.5271 18 6 2.8877 -0.0669 3.4073 19 8 3.9674 0.0459 2.4552 20 6 3.5804 -0.7033 1.2911 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.2490 -1.6317 -1.1528 25 1 2.5599 1.7452 -5.6503 26 1 1.3896 1.0846 2.3001 27 1 0.7676 -0.4430 3.0077 28 1 2.9217 -1.0314 3.9137 29 1 2.9262 0.7486 4.1294 30 1 3.9612 -1.7222 1.3627 31 1 3.9701 -0.2221 0.3941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158572671.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:30 Heat of formation + Delta-G solvation = -98.006043 kcal Electronic energy + Delta-G solvation = -14510.843769 eV Core-core repulsion = 11984.729226 eV Total energy + Delta-G solvation = -2526.114543 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.48411 -37.30114 -34.58654 -32.44436 -31.32279 -29.20402 -28.50294 -26.07748 -22.79953 -22.37314 -20.17964 -19.37430 -17.23398 -16.29733 -15.79299 -15.27883 -14.85034 -14.66463 -13.98752 -13.28474 -12.90697 -12.51101 -12.32408 -12.22613 -11.68860 -11.47212 -11.23644 -11.02095 -10.90850 -10.89691 -10.56861 -10.43808 -10.23115 -10.10407 -9.45245 -8.84404 -7.60102 -7.49845 -6.17108 -4.62896 3.14795 3.21675 3.25009 4.10601 4.11592 4.56132 4.60729 4.82114 5.03795 5.12493 5.30309 5.42208 5.65004 5.73101 5.77319 5.85265 5.89675 6.02179 6.10762 6.17697 6.26825 6.36754 6.68616 6.87231 7.04611 7.44556 7.94316 8.12433 8.34511 9.03936 9.55461 10.61747 10.80668 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051217 B = 0.007327 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.558877 B = 3820.430451 C = 4043.694116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.161 3.839 3 H 0.078 0.922 4 N -0.764 5.764 5 C 0.556 3.444 6 O -0.579 6.579 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.907 3.093 12 H -0.272 1.272 13 H -0.279 1.279 14 H -0.265 1.265 15 C -0.127 4.127 16 H 0.081 0.919 17 C -0.146 4.146 18 C 0.045 3.955 19 O -0.381 6.381 20 C 0.051 3.949 21 H 0.062 0.938 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.378 0.622 25 H 0.268 0.732 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.041 -5.426 11.383 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.096 0.904 4 N -0.418 5.418 5 C 0.360 3.640 6 O -0.462 6.462 7 C -0.584 4.584 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.189 1.189 15 C -0.146 4.146 16 H 0.099 0.901 17 C -0.184 4.184 18 C -0.031 4.031 19 O -0.300 6.300 20 C -0.025 4.025 21 H 0.081 0.919 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.209 0.791 25 H 0.079 0.921 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.073 0.927 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.063 -4.246 11.242 12.064 hybrid contribution 0.122 -1.120 -0.784 1.373 sum -0.941 -5.366 10.457 11.792 Atomic orbital electron populations 1.22189 0.96955 1.00941 1.01559 1.20512 0.92908 0.97167 0.83987 0.90407 1.46227 1.73214 1.12727 1.09646 1.18197 0.77790 0.86381 0.81643 1.90597 1.54729 1.16424 1.84467 1.20896 1.46923 0.97072 0.93471 0.91510 1.25701 0.93362 0.94445 0.99687 1.70020 1.35319 1.08133 1.26221 0.86392 0.79332 0.79781 0.81349 1.19788 1.20471 1.18941 1.22841 0.95732 1.00328 0.95748 0.90091 1.23166 0.98152 1.01925 0.95196 1.23528 0.86062 1.01020 0.92534 1.88868 1.41016 1.73280 1.26868 1.23281 0.93917 0.96004 0.89336 0.91856 0.93482 0.93281 0.79055 0.92141 0.90058 0.90380 0.92621 0.89358 0.92750 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.30 37.16 0.35 -2.40 16 2 C 0.16 3.02 1.84 -67.93 -0.12 2.90 16 3 H 0.08 1.72 7.57 -51.92 -0.39 1.33 16 4 N -0.76 -16.69 4.50 -55.21 -0.25 -16.94 16 5 C 0.56 15.66 7.71 -12.99 -0.10 15.56 16 6 O -0.58 -18.67 14.68 5.20 0.08 -18.59 16 7 C -0.55 -15.41 9.54 -35.63 -0.34 -15.75 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 9 C 0.09 2.46 5.50 -17.37 -0.10 2.36 16 10 N -0.77 -23.16 11.83 55.55 0.66 -22.51 16 11 Si 0.91 20.22 29.56 -169.99 -5.02 15.20 16 12 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 13 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C -0.13 -1.85 2.67 -89.10 -0.24 -2.09 16 16 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 17 C -0.15 -1.78 5.75 -24.72 -0.14 -1.93 16 18 C 0.05 0.54 7.72 38.22 0.30 0.84 16 19 O -0.38 -6.11 11.52 -35.23 -0.41 -6.52 16 20 C 0.05 0.80 7.15 37.73 0.27 1.07 16 21 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.05 0.72 7.31 -51.93 -0.38 0.34 16 24 H 0.38 7.29 8.58 -40.82 -0.35 6.94 16 25 H 0.27 7.33 8.29 -40.82 -0.34 7.00 16 26 H 0.08 1.05 7.75 -51.93 -0.40 0.65 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 1.75 7.41 -51.93 -0.38 1.37 16 LS Contribution 262.33 15.07 3.95 3.95 Total: -1.00 -33.78 262.33 -5.54 -39.32 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -4.41 Total: 5.53 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -0.13 Total: 0.56 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.41 Total: -39.45 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.33 Total: -25.11 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.78 -5.54 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158572671.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.688 kcal (2) G-P(sol) polarization free energy of solvation -33.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds