Wall clock time and date at job start Sun Mar 29 2020 21:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 109.47000 * 2 1 4 4 N 1.46507 * 109.46893 * 240.00742 * 2 1 3 5 5 C 1.34774 * 119.99686 * 84.99649 * 4 2 1 6 6 O 1.21683 * 120.00444 * 0.02562 * 5 4 2 7 7 C 1.46382 * 119.99501 * 180.02562 * 5 4 2 8 8 H 1.08002 * 119.99760 * 359.97438 * 7 5 4 9 9 C 1.40047 * 119.99800 * 180.27774 * 7 5 4 10 10 N 1.30674 * 120.00002 * 359.72267 * 9 7 5 11 11 Si 1.86801 * 119.99850 * 179.72342 * 9 7 5 12 12 H 1.48501 * 109.46896 * 89.99928 * 11 9 7 13 13 H 1.48499 * 109.47039 * 210.00088 * 11 9 7 14 14 H 1.48501 * 109.47275 * 329.99888 * 11 9 7 15 15 C 1.52994 * 109.47498 * 120.00646 * 2 1 3 16 16 H 1.08998 * 110.43584 * 58.90236 * 15 2 1 17 17 C 1.54813 * 110.48630 * 296.22276 * 15 2 1 18 18 C 1.55002 * 102.09087 * 220.44057 * 17 15 2 19 19 O 1.44386 * 103.48637 * 37.02187 * 18 17 15 20 20 C 1.43740 * 106.97813 * 319.94042 * 19 18 17 21 21 H 1.09001 * 109.47180 * 59.99517 * 1 2 3 22 22 H 1.08993 * 109.46744 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46645 * 299.99312 * 1 2 3 24 24 H 0.97000 * 119.99595 * 265.00030 * 4 2 1 25 25 H 0.96995 * 119.99831 * 179.97438 * 10 9 7 26 26 H 1.09001 * 110.90731 * 338.63320 * 17 15 2 27 27 H 1.08997 * 110.91365 * 102.24614 * 17 15 2 28 28 H 1.08998 * 110.61901 * 278.52039 * 18 17 15 29 29 H 1.08997 * 110.61859 * 155.51726 * 18 17 15 30 30 H 1.08999 * 109.87351 * 267.09180 * 20 19 18 31 31 H 1.09000 * 109.87987 * 145.94247 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1963 5 6 2.1470 -0.0180 -2.3572 6 8 1.8580 1.1628 -2.4116 7 6 2.6343 -0.7081 -3.5526 8 1 2.8912 -1.7560 -3.5042 9 6 2.7735 -0.0079 -4.7575 10 7 2.4631 1.2601 -4.8159 11 14 3.4027 -0.8866 -6.2810 12 1 2.2559 -1.4569 -7.0326 13 1 4.1296 0.0785 -7.1444 14 1 4.3229 -1.9800 -5.8773 15 6 2.0401 -0.7213 1.2491 16 1 1.6697 -1.7461 1.2747 17 6 1.6166 0.0429 2.5271 18 6 2.8877 -0.0669 3.4073 19 8 3.9674 0.0459 2.4552 20 6 3.5804 -0.7033 1.2911 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3632 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 2.2490 -1.6317 -1.1528 25 1 2.5599 1.7452 -5.6503 26 1 1.3896 1.0846 2.3001 27 1 0.7676 -0.4430 3.0077 28 1 2.9217 -1.0314 3.9137 29 1 2.9262 0.7486 4.1294 30 1 3.9612 -1.7222 1.3627 31 1 3.9701 -0.2221 0.3941 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158572671.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:30 Heat of formation + Delta-G solvation = -124.040230 kcal Electronic energy + Delta-G solvation = -14511.972696 eV Core-core repulsion = 11984.729226 eV Total energy + Delta-G solvation = -2527.243470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.75305 -39.19474 -36.30142 -34.57160 -32.90067 -30.63044 -29.76075 -28.16010 -24.27531 -23.49060 -21.72987 -21.14261 -19.16693 -17.56328 -17.40638 -16.91695 -16.36905 -16.01085 -15.69257 -14.95679 -14.54850 -14.18773 -13.81910 -13.63654 -13.26372 -13.05761 -12.77436 -12.64061 -12.43263 -12.36747 -12.04392 -11.97091 -11.92191 -11.45544 -10.93127 -10.59890 -9.83118 -9.44758 -8.28207 -6.84785 1.39597 1.41406 1.56471 2.24556 2.48857 3.03088 3.07889 3.56208 3.63139 3.85151 3.96249 4.29643 4.36522 4.40379 4.49316 4.61697 4.79346 4.84437 4.87269 4.91604 5.05238 5.10576 5.22233 5.32293 5.39958 5.89450 5.95902 6.26397 6.33037 6.87715 7.58835 8.52074 8.69538 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.051217 B = 0.007327 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.558877 B = 3820.430451 C = 4043.694116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.159 3.841 3 H 0.033 0.967 4 N -0.750 5.750 5 C 0.540 3.460 6 O -0.632 6.632 7 C -0.575 4.575 8 H 0.088 0.912 9 C 0.027 3.973 10 N -0.824 5.824 11 Si 0.997 3.003 12 H -0.261 1.261 13 H -0.275 1.275 14 H -0.249 1.249 15 C -0.116 4.116 16 H 0.111 0.889 17 C -0.142 4.142 18 C 0.042 3.958 19 O -0.410 6.410 20 C 0.052 3.948 21 H 0.017 0.983 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.394 0.606 25 H 0.273 0.727 26 H 0.067 0.933 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.146 -7.917 12.396 14.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.053 3.947 3 H 0.051 0.949 4 N -0.403 5.403 5 C 0.344 3.656 6 O -0.520 6.520 7 C -0.612 4.612 8 H 0.106 0.894 9 C -0.187 4.187 10 N -0.454 5.454 11 Si 0.817 3.183 12 H -0.186 1.186 13 H -0.199 1.199 14 H -0.172 1.172 15 C -0.135 4.135 16 H 0.129 0.871 17 C -0.179 4.179 18 C -0.034 4.034 19 O -0.330 6.330 20 C -0.025 4.025 21 H 0.037 0.963 22 H 0.089 0.911 23 H 0.100 0.900 24 H 0.227 0.773 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.100 0.900 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.175 -6.784 12.314 14.109 hybrid contribution 0.145 -0.317 -0.987 1.047 sum -1.030 -7.102 11.327 13.409 Atomic orbital electron populations 1.22088 0.95481 1.02200 1.00947 1.20639 0.93996 0.95292 0.84762 0.94873 1.45867 1.72064 1.13249 1.09163 1.18557 0.77486 0.85989 0.83535 1.90551 1.56953 1.18691 1.85769 1.21465 1.47278 0.98230 0.94223 0.89434 1.26983 0.92862 0.95108 1.03781 1.70198 1.36902 1.10553 1.27718 0.85027 0.79023 0.78499 0.75780 1.18553 1.19948 1.17179 1.22776 0.94912 1.01580 0.94267 0.87056 1.23196 0.99640 1.01148 0.93965 1.23809 0.84423 1.03212 0.91980 1.88838 1.42875 1.73712 1.27559 1.23200 0.94644 0.96495 0.88141 0.96320 0.91134 0.90046 0.77256 0.91678 0.91455 0.86845 0.89981 0.87754 0.90474 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.08 9.30 71.98 0.67 -4.41 16 2 C 0.16 6.02 1.84 44.99 0.08 6.11 16 3 H 0.03 1.55 7.57 -2.38 -0.02 1.54 16 4 N -0.75 -33.29 4.50 -446.80 -2.01 -35.30 16 5 C 0.54 31.61 7.71 86.36 0.67 32.27 16 6 O -0.63 -43.11 14.68 -4.29 -0.06 -43.18 16 7 C -0.58 -32.91 9.54 24.83 0.24 -32.68 16 8 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 9 C 0.03 1.55 5.50 85.30 0.47 2.02 16 10 N -0.82 -51.44 11.83 21.84 0.26 -51.18 16 11 Si 1.00 41.46 29.56 68.60 2.03 43.49 16 12 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 13 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 14 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 15 C -0.12 -3.13 2.67 -9.81 -0.03 -3.16 16 16 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 17 C -0.14 -3.02 5.75 31.90 0.18 -2.84 16 18 C 0.04 0.87 7.72 72.67 0.56 1.43 16 19 O -0.41 -12.69 11.52 -148.98 -1.72 -14.40 16 20 C 0.05 1.58 7.15 72.35 0.52 2.10 16 21 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 22 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 23 H 0.08 2.23 7.31 -2.38 -0.02 2.21 16 24 H 0.39 14.90 8.58 -92.71 -0.80 14.10 16 25 H 0.27 15.47 8.29 -92.71 -0.77 14.70 16 26 H 0.07 1.64 7.75 -2.39 -0.02 1.62 16 27 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 2.08 7.41 -2.39 -0.02 2.07 16 Total: -1.00 -78.17 262.33 2.18 -75.98 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.33 Total: 23.74 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: 3.36 Total: 0.84 kcal Atomic # 7 Polarization: -84.73 SS G_CDS: -1.75 Total: -86.48 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -1.78 Total: -57.58 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Total: -78.17 2.18 -75.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158572671.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.055 kcal (2) G-P(sol) polarization free energy of solvation -78.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds