Wall clock time and date at job start Sun Mar 29 2020 21:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47491 * 2 1 4 4 N 1.46506 * 109.47048 * 119.99800 * 2 1 3 5 5 C 1.34778 * 119.99962 * 274.99700 * 4 2 1 6 6 O 1.21685 * 119.99768 * 0.02562 * 5 4 2 7 7 C 1.46376 * 119.99729 * 179.97438 * 5 4 2 8 8 H 1.07996 * 120.00107 * 0.02562 * 7 5 4 9 9 C 1.40045 * 119.99697 * 180.02562 * 7 5 4 10 10 N 1.30676 * 120.00167 * 0.02562 * 9 7 5 11 11 Si 1.86800 * 119.99901 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47021 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.46996 * 120.00254 * 11 9 7 14 14 H 1.48505 * 109.47064 * 240.00209 * 11 9 7 15 15 C 1.53005 * 109.47088 * 239.99704 * 2 1 3 16 16 H 1.08996 * 110.80187 * 301.14283 * 15 2 1 17 17 C 1.54807 * 110.90500 * 177.51094 * 15 2 1 18 18 C 1.54105 * 104.18646 * 220.92106 * 17 15 2 19 19 O 1.43743 * 107.29172 * 357.97325 * 18 17 15 20 20 C 1.44382 * 106.97701 * 26.51394 * 19 18 17 21 21 H 1.09001 * 109.46814 * 175.00795 * 1 2 3 22 22 H 1.09002 * 109.46708 * 295.00518 * 1 2 3 23 23 H 1.08995 * 109.47246 * 55.00775 * 1 2 3 24 24 H 0.97002 * 119.99426 * 94.99774 * 4 2 1 25 25 H 0.96995 * 120.00173 * 180.02562 * 10 9 7 26 26 H 1.08998 * 110.49488 * 339.59566 * 17 15 2 27 27 H 1.09002 * 110.48954 * 102.11580 * 17 15 2 28 28 H 1.09001 * 109.87805 * 117.39333 * 18 17 15 29 29 H 1.09000 * 109.88016 * 238.54832 * 18 17 15 30 30 H 1.09002 * 110.61663 * 201.44167 * 20 19 18 31 31 H 1.08996 * 110.62151 * 78.43796 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8573 1.1624 2.4118 7 6 2.6345 -0.7083 3.5525 8 1 2.8913 -1.7562 3.5040 9 6 2.7678 -0.0098 4.7589 10 7 2.4566 1.2580 4.8177 11 14 3.3904 -0.8903 6.2842 12 1 3.6704 -2.3112 5.9558 13 1 4.6364 -0.2367 6.7591 14 1 2.3588 -0.8232 7.3503 15 6 2.0400 -0.7213 -1.2492 16 1 1.6723 -1.7469 -1.2813 17 6 3.5863 -0.6866 -1.3146 18 6 3.8956 -0.4179 -2.8002 19 8 2.6385 -0.3625 -3.4951 20 6 1.6433 0.0499 -2.5339 21 1 -0.3633 -1.0238 -0.0894 22 1 -0.3633 0.4344 0.9314 23 1 -0.3633 0.5893 -0.8418 24 1 2.2490 -1.6318 1.1526 25 1 2.5493 1.7420 5.6532 26 1 3.9766 0.1186 -0.6921 27 1 4.0030 -1.6445 -1.0033 28 1 4.4186 0.5329 -2.9038 29 1 4.5068 -1.2253 -3.2035 30 1 0.6464 -0.2421 -2.8643 31 1 1.6937 1.1257 -2.3666 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158572822.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:33 Heat of formation + Delta-G solvation = -99.511249 kcal Electronic energy + Delta-G solvation = -14471.706114 eV Core-core repulsion = 11945.526300 eV Total energy + Delta-G solvation = -2526.179814 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.47431 -37.35245 -34.60386 -32.45021 -31.08204 -30.04064 -27.84389 -26.12282 -23.35864 -21.80063 -20.30689 -19.40935 -17.25468 -16.37727 -15.69144 -15.40799 -14.91620 -14.37588 -13.95974 -13.27889 -13.17707 -12.64761 -12.44291 -12.33352 -11.62191 -11.41186 -11.30533 -11.03877 -10.86682 -10.72725 -10.52721 -10.45738 -10.21109 -10.11858 -9.60020 -8.87220 -7.61777 -7.50905 -6.19395 -4.64885 3.11804 3.20194 3.24445 4.04256 4.09087 4.56301 4.61182 4.85418 5.00792 5.17035 5.32447 5.43565 5.62389 5.69172 5.83728 5.84984 5.89176 5.99852 6.12085 6.16234 6.25960 6.34699 6.67201 6.83922 6.96265 7.42694 7.93098 8.11334 8.33295 9.02063 9.54133 10.59539 10.78590 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052562 B = 0.007162 C = 0.006739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.581341 B = 3908.571937 C = 4154.063007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.162 3.838 3 H 0.076 0.924 4 N -0.761 5.761 5 C 0.556 3.444 6 O -0.581 6.581 7 C -0.546 4.546 8 H 0.067 0.933 9 C 0.088 3.912 10 N -0.768 5.768 11 Si 0.906 3.094 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.276 1.276 15 C -0.126 4.126 16 H 0.083 0.917 17 C -0.148 4.148 18 C 0.047 3.953 19 O -0.385 6.385 20 C 0.055 3.945 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.048 0.952 24 H 0.379 0.621 25 H 0.267 0.733 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.656 -4.733 -9.963 11.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.056 3.944 3 H 0.094 0.906 4 N -0.415 5.415 5 C 0.360 3.640 6 O -0.464 6.464 7 C -0.583 4.583 8 H 0.085 0.915 9 C -0.132 4.132 10 N -0.397 5.397 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.202 1.202 15 C -0.145 4.145 16 H 0.102 0.898 17 C -0.185 4.185 18 C -0.030 4.030 19 O -0.304 6.304 20 C -0.022 4.022 21 H 0.066 0.934 22 H 0.083 0.917 23 H 0.067 0.933 24 H 0.210 0.790 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.401 -3.717 -10.027 10.701 hybrid contribution 0.458 -0.876 1.028 1.426 sum 0.858 -4.593 -8.999 10.139 Atomic orbital electron populations 1.22221 0.96950 1.00790 1.01930 1.20420 0.92861 0.96997 0.84150 0.90576 1.46171 1.73139 1.12746 1.09487 1.18201 0.77773 0.86374 0.81660 1.90595 1.54805 1.16461 1.84500 1.20931 1.46858 0.97142 0.93385 0.91482 1.25702 0.93334 0.94456 0.99705 1.70030 1.35335 1.08204 1.26151 0.86343 0.78803 0.80296 0.81464 1.18815 1.20180 1.20177 1.23026 0.95342 1.00597 0.95550 0.89838 1.22936 0.95978 1.03584 0.96034 1.23173 0.86844 1.00983 0.92004 1.88816 1.17741 1.89432 1.34407 1.23579 0.92582 0.98559 0.87483 0.93393 0.91709 0.93268 0.79015 0.92198 0.89989 0.90567 0.92617 0.90266 0.89011 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.24 37.16 0.34 -2.41 16 2 C 0.16 2.99 1.98 -67.92 -0.13 2.86 16 3 H 0.08 1.61 7.57 -51.93 -0.39 1.22 16 4 N -0.76 -16.46 4.79 -55.21 -0.26 -16.73 16 5 C 0.56 15.50 7.71 -12.99 -0.10 15.40 16 6 O -0.58 -18.48 14.68 5.20 0.08 -18.40 16 7 C -0.55 -15.29 9.54 -35.63 -0.34 -15.63 16 8 H 0.07 1.73 7.85 -52.49 -0.41 1.32 16 9 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 10 N -0.77 -22.96 11.83 55.55 0.66 -22.31 16 11 Si 0.91 20.06 29.56 -169.99 -5.02 15.04 16 12 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 13 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 14 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 15 C -0.13 -1.83 2.72 -88.61 -0.24 -2.07 16 16 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 17 C -0.15 -2.08 6.33 -25.20 -0.16 -2.24 16 18 C 0.05 0.60 7.70 37.73 0.29 0.89 16 19 O -0.38 -5.57 11.52 -35.23 -0.41 -5.98 16 20 C 0.05 0.74 6.35 38.21 0.24 0.98 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 23 H 0.05 0.71 7.62 -51.93 -0.40 0.31 16 24 H 0.38 7.30 8.58 -40.82 -0.35 6.95 16 25 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 26 H 0.08 1.31 7.86 -51.93 -0.41 0.90 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.85 8.04 -51.93 -0.42 0.43 16 LS Contribution 263.56 15.07 3.97 3.97 Total: -1.00 -33.17 263.56 -5.65 -38.83 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.47 Total: 5.47 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -0.19 Total: 0.11 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.39 Total: -39.03 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.33 Total: -24.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.17 -5.65 -38.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158572822.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.685 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds