Wall clock time and date at job start Sun Mar 29 2020 22:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.50261 * 2 1 4 4 C 1.53120 * 109.50296 * 120.11475 * 2 1 3 5 5 C 1.53119 * 109.15921 * 177.59189 * 4 2 1 6 6 C 1.53031 * 109.28332 * 302.35128 * 5 4 2 7 7 N 1.46847 * 109.52642 * 59.17746 * 6 5 4 8 8 C 1.46896 * 111.00171 * 174.16453 * 7 6 5 9 9 C 1.53001 * 109.47230 * 294.21012 * 8 7 6 10 10 C 1.50697 * 109.46995 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 179.72339 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 359.72191 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.46848 * 111.19649 * 298.26049 * 7 6 5 19 19 H 1.08998 * 109.47022 * 180.08351 * 1 2 3 20 20 H 1.09004 * 109.47042 * 300.08190 * 1 2 3 21 21 H 1.09000 * 109.47348 * 60.08142 * 1 2 3 22 22 H 0.96700 * 113.99894 * 59.92267 * 3 2 1 23 23 H 1.08991 * 109.52622 * 297.49921 * 4 2 1 24 24 H 1.08998 * 109.51928 * 57.62996 * 4 2 1 25 25 H 1.09004 * 109.50047 * 62.28877 * 5 4 2 26 26 H 1.09001 * 109.50538 * 182.40275 * 5 4 2 27 27 H 1.09004 * 109.45901 * 299.16161 * 6 5 4 28 28 H 1.09002 * 109.46779 * 179.19800 * 6 5 4 29 29 H 1.08998 * 109.47372 * 174.20863 * 8 7 6 30 30 H 1.09006 * 109.47513 * 54.21034 * 8 7 6 31 31 H 1.08998 * 109.47065 * 59.99662 * 9 8 7 32 32 H 1.09001 * 109.46892 * 299.99926 * 9 8 7 33 33 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46297 * 181.75339 * 18 7 6 35 35 H 1.09006 * 109.46471 * 301.73855 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0412 -0.7242 1.2485 5 6 3.5711 -0.7724 1.2105 6 6 4.0229 -1.4729 -0.0729 7 7 3.5093 -0.7417 -1.2381 8 6 4.0372 -1.3050 -2.4878 9 6 5.5496 -1.0820 -2.5490 10 6 6.0911 -1.6594 -3.8313 11 1 5.4241 -2.1416 -4.5305 12 6 7.4390 -1.5767 -4.1095 13 7 7.9125 -2.0854 -5.2261 14 14 8.5927 -0.7420 -2.9004 15 1 9.1070 -1.7452 -1.9338 16 1 9.7305 -0.1374 -3.6387 17 1 7.8579 0.3201 -2.1676 18 6 2.0409 -0.7230 -1.2483 19 1 -0.3633 -1.0277 0.0015 20 1 -0.3633 0.5151 0.8893 21 1 -0.3634 0.5126 -0.8907 22 1 1.7210 1.8656 0.7645 23 1 1.7157 -0.1877 2.1397 24 1 1.6443 -1.7391 1.2690 25 1 3.9677 0.2428 1.2298 26 1 3.9395 -1.3241 2.0753 27 1 3.6374 -2.4924 -0.0850 28 1 5.1120 -1.4962 -0.1099 29 1 3.5628 -0.8133 -3.3371 30 1 3.8259 -2.3739 -2.5225 31 1 6.0240 -1.5738 -1.6997 32 1 5.7609 -0.0132 -2.5144 33 1 8.8607 -2.0268 -5.4219 34 1 1.6905 -0.2015 -2.1390 35 1 1.6647 -1.7461 -1.2547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161006108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:16 Heat of formation + Delta-G solvation = -60.801924 kcal Electronic energy + Delta-G solvation = -14873.485366 eV Core-core repulsion = 12484.817209 eV Total energy + Delta-G solvation = -2388.668157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.48102 -36.22941 -33.47218 -32.28900 -31.33740 -29.79056 -26.60156 -25.31613 -22.73901 -21.94762 -19.82318 -19.57821 -16.84800 -16.28362 -15.46586 -15.03100 -14.55754 -14.29798 -13.95008 -13.67274 -13.02007 -12.76576 -12.56044 -12.46295 -11.93719 -11.90965 -11.75953 -11.25208 -10.99029 -10.82950 -10.70564 -10.32193 -9.89719 -9.79835 -9.65340 -9.52201 -9.13975 -8.47591 -7.69186 -5.99772 -3.97349 3.35890 3.43381 3.51310 4.21132 4.40917 4.51344 4.72648 4.86205 4.99527 5.18238 5.34867 5.40045 5.49672 5.61189 5.70842 5.76183 5.82405 5.85195 5.94205 6.05713 6.10254 6.22615 6.37388 6.43740 6.51476 6.83860 7.23487 7.40711 7.68285 7.71954 7.86258 7.92209 8.58415 9.04552 9.63186 11.13671 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050074 B = 0.007199 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.041943 B = 3888.657441 C = 4106.083250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.133 3.867 3 O -0.537 6.537 4 C -0.144 4.144 5 C -0.113 4.113 6 C 0.052 3.948 7 N -0.531 5.531 8 C 0.071 3.929 9 C -0.007 4.007 10 C -0.520 4.520 11 H 0.070 0.930 12 C 0.067 3.933 13 N -0.905 5.905 14 Si 0.879 3.121 15 H -0.278 1.278 16 H -0.288 1.288 17 H -0.262 1.262 18 C 0.071 3.929 19 H 0.063 0.937 20 H 0.057 0.943 21 H 0.064 0.936 22 H 0.363 0.637 23 H 0.061 0.939 24 H 0.065 0.935 25 H 0.075 0.925 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.023 0.977 31 H 0.010 0.990 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.077 0.923 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.347 3.394 14.067 19.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.091 3.909 3 O -0.341 6.341 4 C -0.182 4.182 5 C -0.151 4.151 6 C -0.076 4.076 7 N -0.255 5.255 8 C -0.055 4.055 9 C -0.044 4.044 10 C -0.559 4.559 11 H 0.088 0.912 12 C -0.134 4.134 13 N -0.545 5.545 14 Si 0.706 3.294 15 H -0.204 1.204 16 H -0.214 1.214 17 H -0.186 1.186 18 C -0.058 4.058 19 H 0.082 0.918 20 H 0.076 0.924 21 H 0.083 0.917 22 H 0.209 0.791 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.079 0.921 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.029 0.971 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.740 3.645 13.419 18.859 hybrid contribution 0.102 -0.399 0.991 1.073 sum -12.638 3.247 14.410 19.440 Atomic orbital electron populations 1.22474 0.96142 1.02497 1.02426 1.21227 0.91310 0.83224 0.95092 1.86761 1.76764 1.22298 1.48281 1.22266 0.97414 1.00862 0.97657 1.21521 0.94544 1.02121 0.96908 1.22122 1.01169 0.94082 0.90193 1.61915 1.05752 1.54602 1.03212 1.22121 0.98344 0.95948 0.89121 1.19569 0.90534 0.97477 0.96866 1.21105 0.93712 1.37293 1.03747 0.91173 1.24993 0.98200 0.94995 0.95191 1.69919 1.13978 1.46159 1.24397 0.86773 0.80499 0.80579 0.81508 1.20430 1.21432 1.18617 1.21997 0.89519 0.97384 0.96904 0.91834 0.92395 0.91666 0.79137 0.92030 0.91666 0.90581 0.92110 0.95712 0.89939 0.91503 0.95830 0.97135 0.95591 0.92787 0.90415 0.94347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 8.82 37.16 0.33 -1.37 16 2 C 0.13 1.65 1.00 -90.54 -0.09 1.56 16 3 O -0.54 -7.31 12.32 -35.23 -0.43 -7.75 16 4 C -0.14 -1.63 4.99 -26.61 -0.13 -1.76 16 5 C -0.11 -1.52 5.94 -26.65 -0.16 -1.68 16 6 C 0.05 0.88 5.29 -3.84 -0.02 0.86 16 7 N -0.53 -9.86 4.54 -234.67 -1.07 -10.92 16 8 C 0.07 1.53 4.90 -3.83 -0.02 1.51 16 9 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 10 C -0.52 -15.30 9.66 -34.44 -0.33 -15.63 16 11 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 14 Si 0.88 22.44 27.47 -169.99 -4.67 17.77 16 15 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 17 H -0.26 -6.53 6.54 56.52 0.37 -6.17 16 18 C 0.07 1.08 4.43 -3.83 -0.02 1.07 16 19 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 20 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.36 3.32 9.05 45.56 0.41 3.74 16 23 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.08 1.11 7.80 -51.93 -0.41 0.70 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 1.51 6.21 -51.93 -0.32 1.19 16 29 H 0.07 1.44 7.99 -51.93 -0.41 1.03 16 30 H 0.02 0.50 8.12 -51.93 -0.42 0.08 16 31 H 0.01 0.26 5.87 -51.93 -0.30 -0.04 16 32 H 0.03 0.68 7.19 -51.93 -0.37 0.31 16 33 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 34 H 0.08 1.23 8.02 -51.93 -0.42 0.81 16 35 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 275.18 15.07 4.15 4.15 Total: -1.00 -32.58 275.18 -7.11 -39.69 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -5.21 Total: -1.36 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -0.65 Total: -13.82 kcal Atomic # 7 Polarization: -38.38 SS G_CDS: -0.29 Total: -38.67 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.43 Total: -7.75 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.67 Total: 17.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.58 -7.11 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161006108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.112 kcal (2) G-P(sol) polarization free energy of solvation -32.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds