Wall clock time and date at job start Sun Mar 29 2020 22:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42903 * 109.50261 * 2 1 4 4 C 1.53120 * 109.50296 * 120.11475 * 2 1 3 5 5 C 1.53119 * 109.15921 * 177.59189 * 4 2 1 6 6 C 1.53031 * 109.28332 * 302.35128 * 5 4 2 7 7 N 1.46847 * 109.52642 * 59.17746 * 6 5 4 8 8 C 1.46896 * 111.00171 * 174.16453 * 7 6 5 9 9 C 1.53001 * 109.47230 * 294.21012 * 8 7 6 10 10 C 1.50697 * 109.46995 * 180.02562 * 9 8 7 11 11 H 1.07991 * 120.00449 * 359.72153 * 10 9 8 12 12 C 1.37885 * 119.99686 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00035 * 179.72339 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 359.72191 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.46848 * 111.19649 * 298.26049 * 7 6 5 19 19 H 1.08998 * 109.47022 * 180.08351 * 1 2 3 20 20 H 1.09004 * 109.47042 * 300.08190 * 1 2 3 21 21 H 1.09000 * 109.47348 * 60.08142 * 1 2 3 22 22 H 0.96700 * 113.99894 * 59.92267 * 3 2 1 23 23 H 1.08991 * 109.52622 * 297.49921 * 4 2 1 24 24 H 1.08998 * 109.51928 * 57.62996 * 4 2 1 25 25 H 1.09004 * 109.50047 * 62.28877 * 5 4 2 26 26 H 1.09001 * 109.50538 * 182.40275 * 5 4 2 27 27 H 1.09004 * 109.45901 * 299.16161 * 6 5 4 28 28 H 1.09002 * 109.46779 * 179.19800 * 6 5 4 29 29 H 1.08998 * 109.47372 * 174.20863 * 8 7 6 30 30 H 1.09006 * 109.47513 * 54.21034 * 8 7 6 31 31 H 1.08998 * 109.47065 * 59.99662 * 9 8 7 32 32 H 1.09001 * 109.46892 * 299.99926 * 9 8 7 33 33 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 34 34 H 1.09001 * 109.46297 * 181.75339 * 18 7 6 35 35 H 1.09006 * 109.46471 * 301.73855 * 18 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0070 1.3470 0.0000 4 6 2.0412 -0.7242 1.2485 5 6 3.5711 -0.7724 1.2105 6 6 4.0229 -1.4729 -0.0729 7 7 3.5093 -0.7417 -1.2381 8 6 4.0372 -1.3050 -2.4878 9 6 5.5496 -1.0820 -2.5490 10 6 6.0911 -1.6594 -3.8313 11 1 5.4241 -2.1416 -4.5305 12 6 7.4390 -1.5767 -4.1095 13 7 7.9125 -2.0854 -5.2261 14 14 8.5927 -0.7420 -2.9004 15 1 9.1070 -1.7452 -1.9338 16 1 9.7305 -0.1374 -3.6387 17 1 7.8579 0.3201 -2.1676 18 6 2.0409 -0.7230 -1.2483 19 1 -0.3633 -1.0277 0.0015 20 1 -0.3633 0.5151 0.8893 21 1 -0.3634 0.5126 -0.8907 22 1 1.7210 1.8656 0.7645 23 1 1.7157 -0.1877 2.1397 24 1 1.6443 -1.7391 1.2690 25 1 3.9677 0.2428 1.2298 26 1 3.9395 -1.3241 2.0753 27 1 3.6374 -2.4924 -0.0850 28 1 5.1120 -1.4962 -0.1099 29 1 3.5628 -0.8133 -3.3371 30 1 3.8259 -2.3739 -2.5225 31 1 6.0240 -1.5738 -1.6997 32 1 5.7609 -0.0132 -2.5144 33 1 8.8607 -2.0268 -5.4219 34 1 1.6905 -0.2015 -2.1390 35 1 1.6647 -1.7461 -1.2547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161006108.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:15 Heat of formation + Delta-G solvation = -85.801387 kcal Electronic energy + Delta-G solvation = -14874.569424 eV Core-core repulsion = 12484.817209 eV Total energy + Delta-G solvation = -2389.752215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.60513 -37.53512 -35.28587 -33.92120 -32.34961 -31.60994 -27.63512 -27.01714 -24.25801 -23.24524 -21.46073 -20.72925 -19.05068 -17.26922 -16.76989 -16.48715 -16.01039 -15.80365 -15.39241 -14.91848 -14.58751 -14.47378 -13.97527 -13.50087 -13.48570 -12.91939 -12.87934 -12.77747 -12.61854 -12.10103 -11.97362 -11.81513 -11.74844 -11.61202 -11.37918 -11.00624 -10.76662 -10.59408 -9.14181 -8.32097 -6.36252 1.33368 1.36594 1.50474 2.35089 2.97884 3.03172 3.38567 3.82705 3.86331 4.01881 4.16946 4.33634 4.39155 4.46197 4.56659 4.65560 4.71019 4.78001 4.87145 4.92840 4.97321 5.02370 5.05827 5.21627 5.28775 5.34356 5.42495 5.48091 5.61554 6.15374 6.25746 6.33900 6.70870 7.09398 7.28523 8.84654 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.050074 B = 0.007199 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.041943 B = 3888.657441 C = 4106.083250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.133 3.867 3 O -0.564 6.564 4 C -0.139 4.139 5 C -0.108 4.108 6 C 0.047 3.953 7 N -0.542 5.542 8 C 0.082 3.918 9 C 0.003 3.997 10 C -0.535 4.535 11 H 0.032 0.968 12 C 0.008 3.992 13 N -0.949 5.949 14 Si 0.951 3.049 15 H -0.263 1.263 16 H -0.280 1.280 17 H -0.253 1.253 18 C 0.063 3.937 19 H 0.072 0.928 20 H 0.081 0.919 21 H 0.057 0.943 22 H 0.383 0.617 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.268 0.732 34 H 0.065 0.935 35 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.155 4.119 16.924 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.093 3.907 3 O -0.371 6.371 4 C -0.176 4.176 5 C -0.146 4.146 6 C -0.081 4.081 7 N -0.267 5.267 8 C -0.045 4.045 9 C -0.035 4.035 10 C -0.573 4.573 11 H 0.051 0.949 12 C -0.189 4.189 13 N -0.590 5.590 14 Si 0.774 3.226 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.176 1.176 18 C -0.065 4.065 19 H 0.091 0.909 20 H 0.100 0.900 21 H 0.076 0.924 22 H 0.231 0.769 23 H 0.109 0.891 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.101 0.899 27 H 0.048 0.952 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -13.578 4.374 16.299 21.659 hybrid contribution 0.303 -0.654 0.030 0.722 sum -13.275 3.720 16.328 21.370 Atomic orbital electron populations 1.22394 0.93684 1.03399 1.03282 1.21227 0.92982 0.82686 0.93851 1.86703 1.77444 1.23047 1.49876 1.22251 0.95507 1.01736 0.98133 1.21491 0.96365 1.01155 0.95548 1.22216 0.99944 0.94810 0.91123 1.61861 1.07979 1.54614 1.02213 1.21809 0.96098 0.95701 0.90919 1.19411 0.93038 0.96274 0.94764 1.21413 0.93723 1.37294 1.04893 0.94926 1.25958 1.00099 0.95624 0.97195 1.70058 1.14772 1.47620 1.26517 0.85647 0.78053 0.79823 0.79099 1.18825 1.20560 1.17649 1.22161 0.87356 0.98440 0.98550 0.90909 0.90006 0.92395 0.76888 0.89073 0.90673 0.91811 0.89926 0.95215 0.92096 0.92543 0.96363 0.96387 0.96526 0.92349 0.91664 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 8.82 71.98 0.63 -2.06 16 2 C 0.13 2.96 1.00 -10.74 -0.01 2.95 16 3 O -0.56 -14.05 12.32 -148.98 -1.83 -15.89 16 4 C -0.14 -2.60 4.99 30.67 0.15 -2.45 16 5 C -0.11 -2.60 5.94 30.64 0.18 -2.42 16 6 C 0.05 1.51 5.29 86.32 0.46 1.96 16 7 N -0.54 -19.88 4.54 -896.35 -4.07 -23.95 16 8 C 0.08 3.61 4.90 86.30 0.42 4.03 16 9 C 0.00 0.15 3.97 29.85 0.12 0.26 16 10 C -0.53 -32.44 9.66 25.60 0.25 -32.19 16 11 H 0.03 2.15 7.99 -2.92 -0.02 2.13 16 12 C 0.01 0.50 5.47 84.66 0.46 0.97 16 13 N -0.95 -61.11 13.96 21.45 0.30 -60.81 16 14 Si 0.95 46.33 27.47 68.60 1.88 48.21 16 15 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 17 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 18 C 0.06 1.87 4.43 86.33 0.38 2.25 16 19 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 20 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 21 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 22 H 0.38 5.84 9.05 -74.06 -0.67 5.17 16 23 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.71 7.80 -2.38 -0.02 1.69 16 26 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 28 H 0.06 2.19 6.21 -2.39 -0.01 2.17 16 29 H 0.06 2.53 7.99 -2.39 -0.02 2.51 16 30 H 0.02 0.80 8.12 -2.38 -0.02 0.78 16 31 H 0.02 0.89 5.87 -2.39 -0.01 0.87 16 32 H 0.02 0.86 7.19 -2.39 -0.02 0.85 16 33 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 34 H 0.06 2.05 8.02 -2.39 -0.02 2.04 16 35 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -71.31 275.18 -0.35 -71.66 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.32 Total: 7.47 kcal Atomic # 6 Polarization: -29.74 SS G_CDS: 3.05 Total: -26.69 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.77 Total: -84.76 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -1.83 Total: -15.89 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 1.88 Total: 48.21 kcal Total: -71.31 -0.35 -71.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161006108.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.140 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds