Wall clock time and date at job start Sun Mar 29 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47469 * 2 1 4 4 O 1.42903 * 109.47295 * 240.00204 * 2 1 3 5 5 C 1.53004 * 109.47059 * 120.00253 * 2 1 3 6 6 H 1.08997 * 110.88170 * 308.87863 * 5 2 1 7 7 C 1.55156 * 111.00144 * 184.99965 * 5 2 1 8 8 C 1.54327 * 102.94181 * 206.42086 * 7 5 2 9 9 N 1.47031 * 107.26879 * 22.19441 * 8 7 5 10 10 C 1.34774 * 125.64691 * 181.01415 * 9 8 7 11 11 O 1.21687 * 119.99831 * 180.02562 * 10 9 8 12 12 C 1.46369 * 120.00325 * 0.02562 * 10 9 8 13 13 H 1.08007 * 119.99914 * 0.02562 * 12 10 9 14 14 C 1.40044 * 120.00073 * 179.97438 * 12 10 9 15 15 N 1.30668 * 120.00127 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99980 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46960 * 89.99960 * 16 14 12 18 18 H 1.48497 * 109.47108 * 210.00097 * 16 14 12 19 19 H 1.48500 * 109.47040 * 330.00299 * 16 14 12 20 20 C 1.47422 * 108.70136 * 1.05978 * 9 8 7 21 21 H 1.08997 * 109.46859 * 300.00384 * 1 2 3 22 22 H 1.09003 * 109.46688 * 59.99798 * 1 2 3 23 23 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 24 24 H 0.96702 * 113.99711 * 300.00155 * 4 2 1 25 25 H 1.09001 * 110.72147 * 88.06020 * 7 5 2 26 26 H 1.08997 * 110.87696 * 324.85799 * 7 5 2 27 27 H 1.08998 * 109.88371 * 141.60876 * 8 7 5 28 28 H 1.08994 * 109.88463 * 262.78171 * 8 7 5 29 29 H 0.97007 * 119.99545 * 179.97438 * 15 14 12 30 30 H 1.09000 * 110.36378 * 217.03375 * 20 9 8 31 31 H 1.09001 * 110.46274 * 94.75551 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.5668 -0.3245 2.1474 7 6 3.5858 -0.6337 1.3499 8 6 3.9509 -1.8912 2.1665 9 7 2.8409 -2.8442 2.0201 10 6 2.7676 -4.0595 2.5982 11 8 1.7968 -4.7674 2.4053 12 6 3.8556 -4.5278 3.4579 13 1 4.7171 -3.8994 3.6294 14 6 3.7792 -5.7904 4.0590 15 7 2.7367 -6.5505 3.8520 16 14 5.1675 -6.3878 5.1569 17 1 4.9007 -5.9785 6.5592 18 1 5.2560 -7.8682 5.0816 19 1 6.4494 -5.7915 4.7025 20 6 1.8220 -2.2507 1.1352 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 3.8872 0.2705 1.8787 26 1 4.0421 -0.6703 0.3607 27 1 4.8702 -2.3306 1.7795 28 1 4.0769 -1.6276 3.2166 29 1 2.6840 -7.4252 4.2681 30 1 0.8217 -2.5178 1.4760 31 1 1.9720 -2.5797 0.1069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161843765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:19 Heat of formation + Delta-G solvation = -95.547131 kcal Electronic energy + Delta-G solvation = -14581.801457 eV Core-core repulsion = 12055.793540 eV Total energy + Delta-G solvation = -2526.007917 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.19238 -36.98706 -35.11505 -32.51241 -31.54104 -29.56145 -28.08476 -26.08716 -23.67433 -21.56658 -20.10007 -19.07224 -16.95408 -16.40108 -15.67893 -15.42402 -14.74641 -14.27528 -13.53936 -13.36683 -13.22984 -12.86232 -12.22360 -12.02570 -11.78456 -11.37589 -11.27266 -11.10686 -11.02448 -10.84335 -10.43547 -10.32967 -10.24677 -10.14947 -9.75324 -8.86720 -7.66170 -7.18696 -6.21320 -4.65826 3.13217 3.19922 3.23681 4.07292 4.41102 4.53460 4.59970 4.78767 5.00290 5.13519 5.34074 5.39515 5.52813 5.77364 5.78630 5.82888 5.93135 6.06063 6.14354 6.24011 6.35256 6.47103 6.61854 6.70834 7.38181 7.42973 7.73925 8.09814 8.41064 9.00607 9.48437 10.56023 10.74930 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.007565 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.044846 B = 3700.217682 C = 3993.440557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.115 3.885 3 H 0.097 0.903 4 O -0.566 6.566 5 C -0.138 4.138 6 H 0.086 0.914 7 C -0.126 4.126 8 C 0.121 3.879 9 N -0.644 5.644 10 C 0.570 3.430 11 O -0.578 6.578 12 C -0.538 4.538 13 H 0.069 0.931 14 C 0.086 3.914 15 N -0.768 5.768 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.119 3.881 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.377 0.623 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.269 0.731 30 H 0.063 0.937 31 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.245 11.364 -4.157 12.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.056 3.944 3 H 0.115 0.885 4 O -0.374 6.374 5 C -0.157 4.157 6 H 0.104 0.896 7 C -0.163 4.163 8 C -0.004 4.004 9 N -0.384 5.384 10 C 0.377 3.623 11 O -0.461 6.461 12 C -0.575 4.575 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.005 4.005 21 H 0.084 0.916 22 H 0.079 0.921 23 H 0.081 0.919 24 H 0.227 0.773 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -0.124 11.254 -4.291 12.045 hybrid contribution 0.445 -0.746 0.775 1.164 sum 0.321 10.508 -3.516 11.085 Atomic orbital electron populations 1.22519 0.96627 1.02960 1.02288 1.21740 0.92552 0.96029 0.84121 0.88533 1.86517 1.77465 1.29668 1.43727 1.23100 0.96995 0.96899 0.98753 0.89604 1.22662 0.94891 0.97862 1.00931 1.21586 0.91391 0.88715 0.98683 1.48679 1.19550 1.18101 1.52105 1.18044 0.87713 0.77108 0.79436 1.90604 1.35434 1.54448 1.65586 1.20902 1.04696 1.02005 1.29906 0.91251 1.25740 0.95905 0.96137 0.95543 1.70024 1.26570 1.08330 1.34803 0.86354 0.81723 0.78158 0.80442 1.19694 1.20387 1.18846 1.21745 0.94391 0.90083 0.94254 0.91637 0.92128 0.91899 0.77306 0.91282 0.90547 0.92928 0.92982 0.92052 0.91857 0.93866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 9.44 37.16 0.35 -1.68 16 2 C 0.11 1.41 3.43 -26.73 -0.09 1.32 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 O -0.57 -7.72 12.66 -35.23 -0.45 -8.17 16 5 C -0.14 -2.02 2.87 -88.47 -0.25 -2.27 16 6 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.13 -1.85 6.37 -24.90 -0.16 -2.00 16 8 C 0.12 2.30 6.05 -3.06 -0.02 2.28 16 9 N -0.64 -15.12 3.33 -172.18 -0.57 -15.70 16 10 C 0.57 16.74 7.78 -12.99 -0.10 16.64 16 11 O -0.58 -19.16 15.28 5.20 0.08 -19.08 16 12 C -0.54 -15.51 9.06 -35.64 -0.32 -15.83 16 13 H 0.07 1.84 7.16 -52.48 -0.38 1.47 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -23.28 11.83 55.55 0.66 -22.63 16 16 Si 0.91 20.30 29.56 -169.99 -5.02 15.27 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.12 2.28 5.73 -2.53 -0.01 2.27 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.06 0.73 7.75 -51.93 -0.40 0.33 16 24 H 0.38 4.69 6.74 45.56 0.31 5.00 16 25 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.08 1.12 7.63 -51.93 -0.40 0.72 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.27 7.35 8.29 -40.82 -0.34 7.02 16 30 H 0.06 1.30 8.04 -51.93 -0.42 0.88 16 31 H 0.04 0.79 5.79 -51.93 -0.30 0.49 16 LS Contribution 258.59 15.07 3.90 3.90 Total: -1.00 -34.70 258.59 -5.79 -40.49 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -3.68 Total: 2.85 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -0.71 Total: 3.06 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.08 Total: -38.32 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.37 Total: -27.25 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -34.70 -5.79 -40.49 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161843765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.057 kcal (2) G-P(sol) polarization free energy of solvation -34.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds