Wall clock time and date at job start Sun Mar 29 2020 21:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47469 * 2 1 4 4 O 1.42903 * 109.47295 * 240.00204 * 2 1 3 5 5 C 1.53004 * 109.47059 * 120.00253 * 2 1 3 6 6 H 1.08997 * 110.88170 * 308.87863 * 5 2 1 7 7 C 1.55156 * 111.00144 * 184.99965 * 5 2 1 8 8 C 1.54327 * 102.94181 * 206.42086 * 7 5 2 9 9 N 1.47031 * 107.26879 * 22.19441 * 8 7 5 10 10 C 1.34774 * 125.64691 * 181.01415 * 9 8 7 11 11 O 1.21687 * 119.99831 * 180.02562 * 10 9 8 12 12 C 1.46369 * 120.00325 * 0.02562 * 10 9 8 13 13 H 1.08007 * 119.99914 * 0.02562 * 12 10 9 14 14 C 1.40044 * 120.00073 * 179.97438 * 12 10 9 15 15 N 1.30668 * 120.00127 * 0.02562 * 14 12 10 16 16 Si 1.86809 * 119.99980 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46960 * 89.99960 * 16 14 12 18 18 H 1.48497 * 109.47108 * 210.00097 * 16 14 12 19 19 H 1.48500 * 109.47040 * 330.00299 * 16 14 12 20 20 C 1.47422 * 108.70136 * 1.05978 * 9 8 7 21 21 H 1.08997 * 109.46859 * 300.00384 * 1 2 3 22 22 H 1.09003 * 109.46688 * 59.99798 * 1 2 3 23 23 H 1.09003 * 109.47185 * 179.97438 * 1 2 3 24 24 H 0.96702 * 113.99711 * 300.00155 * 4 2 1 25 25 H 1.09001 * 110.72147 * 88.06020 * 7 5 2 26 26 H 1.08997 * 110.87696 * 324.85799 * 7 5 2 27 27 H 1.08998 * 109.88371 * 141.60876 * 8 7 5 28 28 H 1.08994 * 109.88463 * 262.78171 * 8 7 5 29 29 H 0.97007 * 119.99545 * 179.97438 * 15 14 12 30 30 H 1.09000 * 110.36378 * 217.03375 * 20 9 8 31 31 H 1.09001 * 110.46274 * 94.75551 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.5668 -0.3245 2.1474 7 6 3.5858 -0.6337 1.3499 8 6 3.9509 -1.8912 2.1665 9 7 2.8409 -2.8442 2.0201 10 6 2.7676 -4.0595 2.5982 11 8 1.7968 -4.7674 2.4053 12 6 3.8556 -4.5278 3.4579 13 1 4.7171 -3.8994 3.6294 14 6 3.7792 -5.7904 4.0590 15 7 2.7367 -6.5505 3.8520 16 14 5.1675 -6.3878 5.1569 17 1 4.9007 -5.9785 6.5592 18 1 5.2560 -7.8682 5.0816 19 1 6.4494 -5.7915 4.7025 20 6 1.8220 -2.2507 1.1352 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.7210 -1.5952 -1.2329 25 1 3.8872 0.2705 1.8787 26 1 4.0421 -0.6703 0.3607 27 1 4.8702 -2.3306 1.7795 28 1 4.0769 -1.6276 3.2166 29 1 2.6840 -7.4252 4.2681 30 1 0.8217 -2.5178 1.4760 31 1 1.9720 -2.5797 0.1069 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161843765.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:19 Heat of formation + Delta-G solvation = -122.523944 kcal Electronic energy + Delta-G solvation = -14582.971260 eV Core-core repulsion = 12055.793540 eV Total energy + Delta-G solvation = -2527.177719 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64273 -38.70205 -36.77787 -34.68808 -32.86469 -30.96226 -29.65344 -28.01073 -25.14400 -22.95633 -21.59176 -20.73583 -18.71706 -17.85346 -17.60090 -16.76522 -16.15522 -15.89566 -15.34306 -14.85029 -14.55426 -14.35565 -13.80869 -13.38705 -13.16980 -13.03580 -12.85847 -12.71162 -12.66116 -12.44009 -12.09543 -12.01310 -11.61837 -11.41480 -10.96900 -10.85104 -9.93016 -9.11543 -8.33844 -6.89908 1.37470 1.39297 1.55015 2.21351 2.40546 2.83167 3.48406 3.52529 3.54549 3.75389 4.02010 4.27862 4.30806 4.40736 4.44554 4.61003 4.79064 4.92533 4.95948 5.01604 5.14490 5.15234 5.27833 5.32914 5.41043 5.62147 6.00384 6.38715 6.72605 6.82256 7.43309 8.40699 8.62562 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.058436 B = 0.007565 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.044846 B = 3700.217682 C = 3993.440557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.121 3.879 3 H 0.122 0.878 4 O -0.576 6.576 5 C -0.123 4.123 6 H 0.093 0.907 7 C -0.110 4.110 8 C 0.112 3.888 9 N -0.654 5.654 10 C 0.550 3.450 11 O -0.634 6.634 12 C -0.566 4.566 13 H 0.085 0.915 14 C 0.027 3.973 15 N -0.822 5.822 16 Si 1.000 3.000 17 H -0.259 1.259 18 H -0.271 1.271 19 H -0.249 1.249 20 C 0.112 3.888 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.047 0.953 24 H 0.379 0.621 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.276 0.724 30 H 0.038 0.962 31 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 13.310 -3.845 13.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.062 3.938 3 H 0.140 0.860 4 O -0.384 6.384 5 C -0.142 4.142 6 H 0.111 0.889 7 C -0.148 4.148 8 C -0.011 4.011 9 N -0.392 5.392 10 C 0.356 3.644 11 O -0.522 6.522 12 C -0.603 4.603 13 H 0.104 0.896 14 C -0.188 4.188 15 N -0.452 5.452 16 Si 0.818 3.182 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.172 1.172 20 C -0.011 4.011 21 H 0.096 0.904 22 H 0.092 0.908 23 H 0.066 0.934 24 H 0.229 0.771 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.474 13.273 -4.007 13.943 hybrid contribution -0.086 -1.304 0.624 1.449 sum 1.388 11.969 -3.383 12.515 Atomic orbital electron populations 1.22499 0.95723 1.02407 1.03548 1.21848 0.93279 0.96477 0.82240 0.85995 1.86507 1.77757 1.29960 1.44221 1.23069 0.97330 0.93218 1.00601 0.88907 1.22629 0.94520 0.96785 1.00841 1.21849 0.89879 0.89647 0.99740 1.48517 1.21772 1.17362 1.51501 1.18425 0.87383 0.78575 0.79972 1.90542 1.37209 1.56806 1.67606 1.21406 1.05239 1.03162 1.30459 0.89642 1.27041 0.99044 0.95825 0.96867 1.70192 1.29496 1.09121 1.36373 0.84995 0.77561 0.77702 0.77898 1.18377 1.19528 1.17210 1.21961 0.92123 0.93473 0.93584 0.90443 0.90830 0.93404 0.77070 0.87674 0.89948 0.93352 0.92922 0.91432 0.94321 0.93179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.61 9.44 71.98 0.68 -2.94 16 2 C 0.12 2.60 3.43 30.59 0.10 2.71 16 3 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 4 O -0.58 -14.45 12.66 -148.98 -1.89 -16.34 16 5 C -0.12 -3.32 2.87 -9.40 -0.03 -3.35 16 6 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 7 C -0.11 -2.90 6.37 31.78 0.20 -2.69 16 8 C 0.11 4.14 6.05 86.73 0.52 4.67 16 9 N -0.65 -31.24 3.33 -816.87 -2.72 -33.96 16 10 C 0.55 33.48 7.78 86.36 0.67 34.15 16 11 O -0.63 -44.26 15.28 -4.31 -0.07 -44.32 16 12 C -0.57 -33.22 9.06 24.83 0.22 -32.99 16 13 H 0.09 4.54 7.16 -2.91 -0.02 4.52 16 14 C 0.03 1.55 5.50 85.30 0.47 2.02 16 15 N -0.82 -51.41 11.83 21.83 0.26 -51.15 16 16 Si 1.00 41.55 29.56 68.60 2.03 43.58 16 17 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 19 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 20 C 0.11 4.33 5.73 86.86 0.50 4.83 16 21 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.05 1.08 7.75 -2.39 -0.02 1.06 16 24 H 0.38 9.08 6.74 -74.06 -0.50 8.58 16 25 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.08 2.12 7.63 -2.39 -0.02 2.10 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.28 15.51 8.29 -92.70 -0.77 14.74 16 30 H 0.04 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.05 1.85 5.79 -2.39 -0.01 1.84 16 Total: -1.00 -78.52 258.59 1.59 -76.93 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.63 Total: 18.86 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 3.35 Total: 6.40 kcal Atomic # 7 Polarization: -82.65 SS G_CDS: -2.46 Total: -85.11 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -1.95 Total: -60.66 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -78.52 1.59 -76.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161843765.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.595 kcal (2) G-P(sol) polarization free energy of solvation -78.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds