Wall clock time and date at job start Sun Mar 29 2020 21:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47866 * 2 1 4 4 O 1.42901 * 109.47099 * 239.99511 * 2 1 3 5 5 C 1.53006 * 109.46904 * 120.00122 * 2 1 3 6 6 H 1.09006 * 110.88516 * 62.43072 * 5 2 1 7 7 C 1.55162 * 111.03621 * 186.32328 * 5 2 1 8 8 C 1.54333 * 103.01776 * 153.39476 * 7 5 2 9 9 N 1.47028 * 107.26774 * 338.14403 * 8 7 5 10 10 C 1.34774 * 125.64742 * 178.84703 * 9 8 7 11 11 O 1.21682 * 119.99943 * 179.69684 * 10 9 8 12 12 C 1.46373 * 119.99951 * 359.69249 * 10 9 8 13 13 H 1.08000 * 120.00606 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 179.97438 * 12 10 9 15 15 N 1.30669 * 120.00074 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99877 * 179.72659 * 14 12 10 17 17 H 1.48498 * 109.46909 * 89.99994 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99903 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00008 * 16 14 12 20 20 C 1.47418 * 108.70119 * 358.58568 * 9 8 7 21 21 H 1.09001 * 109.46871 * 300.00046 * 1 2 3 22 22 H 1.08997 * 109.47283 * 59.99420 * 1 2 3 23 23 H 1.08996 * 109.47347 * 180.02562 * 1 2 3 24 24 H 0.96701 * 114.00273 * 300.00944 * 4 2 1 25 25 H 1.08995 * 110.72456 * 271.95521 * 7 5 2 26 26 H 1.08999 * 110.71695 * 35.05691 * 7 5 2 27 27 H 1.09003 * 109.99273 * 218.66904 * 8 7 5 28 28 H 1.09001 * 109.77875 * 97.50366 * 8 7 5 29 29 H 0.97000 * 120.00425 * 179.97438 * 15 14 12 30 30 H 1.09001 * 110.36677 * 143.19517 * 20 9 8 31 31 H 1.09000 * 110.36685 * 265.40760 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2493 6 1 1.7250 -1.7649 1.2512 7 6 3.5827 -0.6059 1.3683 8 6 3.8244 -0.7303 2.8875 9 7 2.5675 -0.3706 3.5603 10 6 2.3602 -0.3753 4.8920 11 8 1.2760 -0.0523 5.3401 12 6 3.4393 -0.7690 5.7993 13 1 4.4017 -1.0553 5.4017 14 6 3.2240 -0.7733 7.1832 15 7 2.0597 -0.4263 7.6644 16 14 4.5988 -1.2830 8.3407 17 1 5.3958 -0.0885 8.7188 18 1 4.0162 -1.8961 9.5613 19 1 5.4769 -2.2696 7.6620 20 6 1.5736 0.0019 2.5373 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.7209 -1.5953 -1.2329 25 1 4.0728 -1.4169 0.8298 26 1 3.9263 0.3615 1.0021 27 1 4.6178 -0.0493 3.1957 28 1 4.0969 -1.7563 3.1349 29 1 1.9105 -0.4296 8.6228 30 1 0.5817 -0.3438 2.8285 31 1 1.5695 1.0816 2.3878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161844027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:25 Heat of formation + Delta-G solvation = -98.322323 kcal Electronic energy + Delta-G solvation = -14462.643737 eV Core-core repulsion = 11936.515479 eV Total energy + Delta-G solvation = -2526.128258 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.02877 -37.09365 -35.30059 -32.50715 -31.63666 -29.62972 -27.84374 -26.08314 -23.44184 -21.64098 -20.37166 -19.12537 -16.86449 -16.49842 -15.58116 -15.35029 -14.75714 -14.31416 -13.46670 -13.44570 -13.06458 -12.83866 -12.50670 -12.01664 -11.80181 -11.43244 -11.22089 -11.04685 -11.00960 -10.87041 -10.47913 -10.37598 -10.29241 -10.14562 -9.77370 -8.86546 -7.65466 -7.18732 -6.21000 -4.65575 3.13328 3.19928 3.23610 4.07558 4.33123 4.52079 4.55508 4.89249 4.92179 5.18006 5.37285 5.38075 5.50178 5.75811 5.80331 5.85248 5.94800 6.11558 6.12699 6.21676 6.39025 6.48315 6.62565 6.68751 7.39034 7.43245 7.63157 8.10197 8.41512 9.00798 9.49021 10.56480 10.75397 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061340 B = 0.007255 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.365990 B = 3858.524301 C = 4242.279064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.114 3.886 3 H 0.099 0.901 4 O -0.565 6.565 5 C -0.136 4.136 6 H 0.080 0.920 7 C -0.120 4.120 8 C 0.119 3.881 9 N -0.646 5.646 10 C 0.570 3.430 11 O -0.578 6.578 12 C -0.539 4.539 13 H 0.069 0.931 14 C 0.086 3.914 15 N -0.769 5.769 16 Si 0.909 3.091 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.124 3.876 21 H 0.071 0.929 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.372 0.628 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.269 0.731 30 H 0.064 0.936 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -1.554 -12.181 12.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.055 3.945 3 H 0.117 0.883 4 O -0.370 6.370 5 C -0.155 4.155 6 H 0.099 0.901 7 C -0.158 4.158 8 C -0.005 4.005 9 N -0.387 5.387 10 C 0.377 3.623 11 O -0.460 6.460 12 C -0.575 4.575 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C 0.000 4.000 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.219 0.781 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.171 -0.766 -11.758 11.841 hybrid contribution 0.459 -0.794 0.725 1.169 sum 1.629 -1.560 -11.033 11.261 Atomic orbital electron populations 1.22526 0.96477 1.02584 1.02816 1.21868 0.92757 0.96378 0.83494 0.88340 1.86558 1.77439 1.28933 1.44048 1.23110 0.96722 1.00415 0.95257 0.90143 1.22609 0.94960 1.02004 0.96219 1.21611 0.88942 0.99671 0.90307 1.48718 1.10992 1.73340 1.05620 1.18040 0.88918 0.77678 0.77661 1.90603 1.27457 1.53598 1.74376 1.20906 0.98135 1.48063 0.90431 0.91253 1.25744 0.95816 0.93047 0.98723 1.70021 1.21818 1.34535 1.13366 0.86354 0.81357 0.79350 0.79613 1.19676 1.20399 1.18862 1.21727 0.94359 0.97227 0.86709 0.90967 0.92144 0.92367 0.78127 0.91012 0.91318 0.92912 0.92937 0.92050 0.91762 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.07 9.33 37.16 0.35 -1.72 16 2 C 0.11 1.40 3.11 -26.73 -0.08 1.32 16 3 H 0.10 1.24 8.11 -51.93 -0.42 0.82 16 4 O -0.56 -6.62 13.19 -35.23 -0.46 -7.08 16 5 C -0.14 -1.98 2.79 -88.47 -0.25 -2.22 16 6 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 7 C -0.12 -1.76 6.28 -24.89 -0.16 -1.92 16 8 C 0.12 2.26 6.05 -3.06 -0.02 2.24 16 9 N -0.65 -15.24 3.33 -172.17 -0.57 -15.82 16 10 C 0.57 16.79 7.78 -12.99 -0.10 16.69 16 11 O -0.58 -19.22 15.28 5.20 0.08 -19.14 16 12 C -0.54 -15.52 9.06 -35.63 -0.32 -15.85 16 13 H 0.07 1.84 7.16 -52.49 -0.38 1.47 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -23.32 11.83 55.55 0.66 -22.66 16 16 Si 0.91 20.30 29.56 -169.99 -5.02 15.28 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 19 H -0.26 -5.71 7.11 56.52 0.40 -5.31 16 20 C 0.12 2.40 5.33 -2.53 -0.01 2.39 16 21 H 0.07 0.86 7.27 -51.93 -0.38 0.49 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.37 3.07 9.05 45.56 0.41 3.48 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.07 0.96 8.01 -51.93 -0.42 0.55 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 30 H 0.06 1.33 7.94 -51.93 -0.41 0.92 16 31 H 0.04 0.85 8.04 -51.93 -0.42 0.43 16 LS Contribution 262.47 15.07 3.96 3.96 Total: -1.00 -35.04 262.47 -5.74 -40.78 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.68 Total: 1.42 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: -0.69 Total: 3.27 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.08 Total: -38.48 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.39 Total: -26.22 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -35.04 -5.74 -40.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161844027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.543 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds