Wall clock time and date at job start Sun Mar 29 2020 21:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47866 * 2 1 4 4 O 1.42901 * 109.47099 * 239.99511 * 2 1 3 5 5 C 1.53006 * 109.46904 * 120.00122 * 2 1 3 6 6 H 1.09006 * 110.88516 * 62.43072 * 5 2 1 7 7 C 1.55162 * 111.03621 * 186.32328 * 5 2 1 8 8 C 1.54333 * 103.01776 * 153.39476 * 7 5 2 9 9 N 1.47028 * 107.26774 * 338.14403 * 8 7 5 10 10 C 1.34774 * 125.64742 * 178.84703 * 9 8 7 11 11 O 1.21682 * 119.99943 * 179.69684 * 10 9 8 12 12 C 1.46373 * 119.99951 * 359.69249 * 10 9 8 13 13 H 1.08000 * 120.00606 * 0.02562 * 12 10 9 14 14 C 1.40055 * 119.99881 * 179.97438 * 12 10 9 15 15 N 1.30669 * 120.00074 * 0.02562 * 14 12 10 16 16 Si 1.86805 * 119.99877 * 179.72659 * 14 12 10 17 17 H 1.48498 * 109.46909 * 89.99994 * 16 14 12 18 18 H 1.48497 * 109.46701 * 209.99903 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00008 * 16 14 12 20 20 C 1.47418 * 108.70119 * 358.58568 * 9 8 7 21 21 H 1.09001 * 109.46871 * 300.00046 * 1 2 3 22 22 H 1.08997 * 109.47283 * 59.99420 * 1 2 3 23 23 H 1.08996 * 109.47347 * 180.02562 * 1 2 3 24 24 H 0.96701 * 114.00273 * 300.00944 * 4 2 1 25 25 H 1.08995 * 110.72456 * 271.95521 * 7 5 2 26 26 H 1.08999 * 110.71695 * 35.05691 * 7 5 2 27 27 H 1.09003 * 109.99273 * 218.66904 * 8 7 5 28 28 H 1.09001 * 109.77875 * 97.50366 * 8 7 5 29 29 H 0.97000 * 120.00425 * 179.97438 * 15 14 12 30 30 H 1.09001 * 110.36677 * 143.19517 * 20 9 8 31 31 H 1.09000 * 110.36685 * 265.40760 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.0399 -0.7213 1.2493 6 1 1.7250 -1.7649 1.2512 7 6 3.5827 -0.6059 1.3683 8 6 3.8244 -0.7303 2.8875 9 7 2.5675 -0.3706 3.5603 10 6 2.3602 -0.3753 4.8920 11 8 1.2760 -0.0523 5.3401 12 6 3.4393 -0.7690 5.7993 13 1 4.4017 -1.0553 5.4017 14 6 3.2240 -0.7733 7.1832 15 7 2.0597 -0.4263 7.6644 16 14 4.5988 -1.2830 8.3407 17 1 5.3958 -0.0885 8.7188 18 1 4.0162 -1.8961 9.5613 19 1 5.4769 -2.2696 7.6620 20 6 1.5736 0.0019 2.5373 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.7209 -1.5953 -1.2329 25 1 4.0728 -1.4169 0.8298 26 1 3.9263 0.3615 1.0021 27 1 4.6178 -0.0493 3.1957 28 1 4.0969 -1.7563 3.1349 29 1 1.9105 -0.4296 8.6228 30 1 0.5817 -0.3438 2.8285 31 1 1.5695 1.0816 2.3878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161844027.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:24 Heat of formation + Delta-G solvation = -125.975408 kcal Electronic energy + Delta-G solvation = -14463.842865 eV Core-core repulsion = 11936.515479 eV Total energy + Delta-G solvation = -2527.327386 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51563 -38.66947 -36.96811 -34.68640 -32.95979 -31.07013 -29.40611 -27.97804 -24.95986 -22.99267 -21.67305 -20.98751 -18.68533 -17.74059 -17.61426 -16.57599 -16.16587 -16.03200 -15.29700 -14.76584 -14.52226 -14.28949 -13.85967 -13.49322 -13.22693 -13.07580 -12.94696 -12.72086 -12.61744 -12.29664 -12.11089 -12.00909 -11.70485 -11.46798 -10.96852 -10.83030 -9.92674 -9.12984 -8.33696 -6.89898 1.37634 1.39511 1.55180 2.21462 2.40642 2.83653 3.31470 3.52242 3.72322 3.79510 3.95930 4.28850 4.31724 4.37228 4.45494 4.61022 4.79114 4.88568 4.96874 5.01644 5.11441 5.17149 5.27210 5.28036 5.41365 5.62251 6.00449 6.38507 6.82242 6.89338 7.43356 8.40761 8.62697 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.061340 B = 0.007255 C = 0.006599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.365990 B = 3858.524301 C = 4242.279064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.126 3.874 3 H 0.097 0.903 4 O -0.568 6.568 5 C -0.118 4.118 6 H 0.087 0.913 7 C -0.106 4.106 8 C 0.111 3.889 9 N -0.656 5.656 10 C 0.549 3.451 11 O -0.634 6.634 12 C -0.566 4.566 13 H 0.086 0.914 14 C 0.027 3.973 15 N -0.823 5.823 16 Si 1.000 3.000 17 H -0.260 1.260 18 H -0.271 1.271 19 H -0.248 1.248 20 C 0.118 3.882 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.389 0.611 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.276 0.724 30 H 0.041 0.959 31 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.525 -2.418 -13.544 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.067 3.933 3 H 0.115 0.885 4 O -0.375 6.375 5 C -0.138 4.138 6 H 0.106 0.894 7 C -0.143 4.143 8 C -0.012 4.012 9 N -0.394 5.394 10 C 0.356 3.644 11 O -0.522 6.522 12 C -0.602 4.602 13 H 0.104 0.896 14 C -0.188 4.188 15 N -0.452 5.452 16 Si 0.819 3.181 17 H -0.184 1.184 18 H -0.195 1.195 19 H -0.171 1.171 20 C -0.005 4.005 21 H 0.075 0.925 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.238 0.762 25 H 0.120 0.880 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.079 -1.646 -13.203 13.656 hybrid contribution -0.161 -0.521 1.066 1.197 sum 2.919 -2.166 -12.137 12.669 Atomic orbital electron populations 1.22498 0.95774 1.03215 1.02709 1.21660 0.93180 0.95994 0.82465 0.88467 1.86544 1.77524 1.30411 1.43031 1.23038 0.96628 1.00411 0.93712 0.89444 1.22583 0.94954 1.03917 0.92883 1.21870 0.86858 0.99441 0.93033 1.48566 1.13710 1.72138 1.04985 1.18435 0.88503 0.77557 0.79876 1.90541 1.29279 1.56018 1.76324 1.21409 0.98739 1.48573 0.91513 0.89586 1.27051 0.98947 0.92165 1.00634 1.70190 1.24927 1.35781 1.14313 0.84991 0.77115 0.79460 0.76558 1.18430 1.19524 1.17145 1.21908 0.92640 0.97930 0.88066 0.92511 0.90800 0.91454 0.76173 0.87996 0.90130 0.93103 0.92955 0.91425 0.94088 0.93591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 9.33 71.98 0.67 -3.09 16 2 C 0.13 2.77 3.11 30.59 0.10 2.87 16 3 H 0.10 2.20 8.11 -2.39 -0.02 2.18 16 4 O -0.57 -11.17 13.19 -148.98 -1.97 -13.14 16 5 C -0.12 -3.22 2.79 -9.40 -0.03 -3.25 16 6 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 7 C -0.11 -2.80 6.28 31.79 0.20 -2.60 16 8 C 0.11 4.10 6.05 86.73 0.52 4.63 16 9 N -0.66 -31.50 3.33 -816.86 -2.72 -34.21 16 10 C 0.55 33.55 7.78 86.36 0.67 34.22 16 11 O -0.63 -44.40 15.28 -4.29 -0.07 -44.47 16 12 C -0.57 -33.19 9.06 24.83 0.23 -32.96 16 13 H 0.09 4.56 7.16 -2.91 -0.02 4.54 16 14 C 0.03 1.54 5.50 85.31 0.47 2.01 16 15 N -0.82 -51.46 11.83 21.84 0.26 -51.20 16 16 Si 1.00 41.51 29.56 68.60 2.03 43.53 16 17 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 18 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 19 H -0.25 -9.55 7.11 99.48 0.71 -8.85 16 20 C 0.12 4.63 5.33 86.86 0.46 5.10 16 21 H 0.06 1.34 7.27 -2.39 -0.02 1.32 16 22 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.39 4.86 9.05 -74.06 -0.67 4.19 16 25 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.08 1.99 8.01 -2.39 -0.02 1.97 16 27 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 29 H 0.28 15.52 8.29 -92.71 -0.77 14.75 16 30 H 0.04 1.77 7.94 -2.39 -0.02 1.75 16 31 H 0.05 1.77 8.04 -2.39 -0.02 1.75 16 Total: -1.00 -79.11 262.47 1.28 -77.83 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.45 Total: 14.74 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 3.29 Total: 6.92 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.46 Total: -85.41 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -2.03 Total: -57.60 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -79.11 1.28 -77.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161844027.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.148 kcal (2) G-P(sol) polarization free energy of solvation -79.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds