Wall clock time and date at job start Sun Mar 29 2020 21:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46641 * 2 1 4 4 O 1.42897 * 109.47203 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47095 * 239.99794 * 2 1 3 6 6 H 1.09005 * 110.91733 * 62.45087 * 5 2 1 7 7 C 1.55158 * 111.00241 * 186.34998 * 5 2 1 8 8 C 1.54323 * 102.94451 * 153.57777 * 7 5 2 9 9 N 1.47291 * 107.30410 * 337.81763 * 8 7 5 10 10 C 1.34773 * 125.79577 * 178.92804 * 9 8 7 11 11 O 1.21684 * 120.00574 * 180.02562 * 10 9 8 12 12 C 1.46380 * 120.00116 * 359.97438 * 10 9 8 13 13 H 1.08000 * 119.99474 * 353.84418 * 12 10 9 14 14 C 1.40041 * 120.00262 * 173.83675 * 12 10 9 15 15 N 1.30670 * 120.00097 * 6.13426 * 14 12 10 16 16 Si 1.86805 * 119.99907 * 186.13185 * 14 12 10 17 17 H 1.48499 * 109.47012 * 94.98403 * 16 14 12 18 18 H 1.48498 * 109.46804 * 214.98694 * 16 14 12 19 19 H 1.48499 * 109.47046 * 334.98338 * 16 14 12 20 20 C 1.47426 * 108.56001 * 358.92620 * 9 8 7 21 21 H 1.08999 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47221 * 300.00353 * 1 2 3 23 23 H 1.09005 * 109.46874 * 60.00690 * 1 2 3 24 24 H 0.96703 * 114.00103 * 59.99793 * 4 2 1 25 25 H 1.09006 * 110.72164 * 271.94026 * 7 5 2 26 26 H 1.08999 * 110.72327 * 35.03488 * 7 5 2 27 27 H 1.09003 * 109.88512 * 97.21902 * 8 7 5 28 28 H 1.08998 * 109.88365 * 218.38979 * 8 7 5 29 29 H 0.97000 * 119.99958 * 180.02562 * 15 14 12 30 30 H 1.09006 * 110.36521 * 265.26389 * 20 9 8 31 31 H 1.08994 * 110.37225 * 143.05047 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 1 1.7258 -0.2014 -2.1543 7 6 3.5827 -0.8822 -1.2076 8 6 3.8234 -2.1330 -2.0789 9 7 2.5663 -2.9001 -2.1010 10 6 2.3566 -4.0508 -2.7706 11 8 1.2711 -4.5980 -2.7152 12 6 3.4343 -4.6418 -3.5655 13 1 4.3637 -4.1077 -3.6968 14 6 3.2602 -5.8999 -4.1555 15 7 2.0974 -6.4932 -4.0984 16 14 4.6905 -6.7299 -5.0244 17 1 5.3697 -7.6575 -4.0845 18 1 4.1840 -7.4928 -6.1934 19 1 5.6547 -5.6992 -5.4861 20 6 1.5736 -2.1984 -1.2669 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.7211 -1.5952 1.2330 25 1 4.0733 -0.0104 -1.6405 26 1 3.9257 -1.0485 -0.1864 27 1 4.0918 -1.8331 -3.0919 28 1 4.6196 -2.7387 -1.6461 29 1 1.9769 -7.3647 -4.5067 30 1 1.5702 -2.6072 -0.2564 31 1 0.5813 -2.2775 -1.7107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161844179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:27 Heat of formation + Delta-G solvation = -96.809838 kcal Electronic energy + Delta-G solvation = -14591.818632 eV Core-core repulsion = 12065.755960 eV Total energy + Delta-G solvation = -2526.062672 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.19074 -36.98490 -35.10274 -32.51502 -31.54188 -29.61419 -27.97404 -26.08351 -23.73047 -21.57663 -20.05373 -19.05378 -16.92089 -16.44119 -15.68851 -15.43627 -14.72406 -14.28970 -13.47760 -13.37024 -13.18297 -12.86581 -12.31771 -12.03429 -11.76368 -11.40728 -11.32009 -11.10455 -10.97578 -10.82675 -10.42536 -10.32032 -10.22908 -10.14129 -9.77799 -8.86448 -7.66110 -7.19660 -6.22420 -4.65526 3.12966 3.20020 3.23779 4.07317 4.41041 4.52224 4.59953 4.80382 4.99473 5.13989 5.34689 5.41114 5.53465 5.76951 5.79403 5.82330 5.92864 6.07271 6.16777 6.25775 6.35510 6.47021 6.61562 6.71220 7.37350 7.43015 7.72734 8.09837 8.41204 9.00586 9.48004 10.55520 10.74416 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057822 B = 0.007618 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.128195 B = 3674.672224 C = 3984.053199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.115 3.885 3 H 0.097 0.903 4 O -0.565 6.565 5 C -0.139 4.139 6 H 0.086 0.914 7 C -0.126 4.126 8 C 0.120 3.880 9 N -0.645 5.645 10 C 0.571 3.429 11 O -0.578 6.578 12 C -0.539 4.539 13 H 0.070 0.930 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.909 3.091 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.264 1.264 20 C 0.121 3.879 21 H 0.063 0.937 22 H 0.059 0.941 23 H 0.065 0.935 24 H 0.376 0.624 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.269 0.731 30 H 0.040 0.960 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.722 10.629 5.256 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.056 3.944 3 H 0.114 0.886 4 O -0.372 6.372 5 C -0.158 4.158 6 H 0.104 0.896 7 C -0.164 4.164 8 C -0.004 4.004 9 N -0.385 5.385 10 C 0.377 3.623 11 O -0.461 6.461 12 C -0.576 4.576 13 H 0.088 0.912 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.188 1.188 20 C -0.003 4.003 21 H 0.082 0.918 22 H 0.078 0.922 23 H 0.084 0.916 24 H 0.225 0.775 25 H 0.087 0.913 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.256 10.636 5.282 11.942 hybrid contribution 0.474 -0.885 -0.637 1.189 sum 1.730 9.751 4.645 10.939 Atomic orbital electron populations 1.22522 0.96565 1.03070 1.02290 1.21727 0.92642 0.95958 0.84084 0.88563 1.86506 1.77388 1.29553 1.43770 1.23108 0.96764 0.97155 0.98774 0.89609 1.22655 0.94907 0.97816 1.00990 1.21636 0.88916 0.91364 0.98486 1.48760 1.11044 1.25944 1.52783 1.18045 0.88829 0.76808 0.78571 1.90603 1.27113 1.61272 1.67108 1.20902 1.00604 1.03422 1.32663 0.91220 1.25735 0.95940 0.96962 0.94655 1.70028 1.22388 1.13245 1.34045 0.86342 0.81647 0.79604 0.79103 1.19732 1.20397 1.18831 1.21738 0.94512 0.89358 0.94692 0.91783 0.92154 0.91610 0.77452 0.91317 0.90288 0.93024 0.92857 0.92058 0.94188 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 9.33 37.16 0.35 -1.73 16 2 C 0.12 1.41 3.54 -26.73 -0.09 1.31 16 3 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 4 O -0.56 -7.52 12.26 -35.23 -0.43 -7.95 16 5 C -0.14 -2.02 2.99 -88.47 -0.26 -2.28 16 6 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 7 C -0.13 -1.85 6.36 -24.90 -0.16 -2.00 16 8 C 0.12 2.28 6.09 -2.92 -0.02 2.26 16 9 N -0.65 -15.10 3.34 -171.96 -0.57 -15.67 16 10 C 0.57 16.73 7.78 -12.99 -0.10 16.63 16 11 O -0.58 -19.16 15.30 5.20 0.08 -19.08 16 12 C -0.54 -15.52 9.05 -35.63 -0.32 -15.84 16 13 H 0.07 1.85 7.18 -52.49 -0.38 1.48 16 14 C 0.09 2.45 5.49 -17.37 -0.10 2.35 16 15 N -0.77 -23.26 11.85 55.55 0.66 -22.60 16 16 Si 0.91 20.29 29.56 -169.99 -5.03 15.27 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.29 16 20 C 0.12 2.31 5.28 -2.53 -0.01 2.29 16 21 H 0.06 0.77 7.27 -51.93 -0.38 0.39 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.38 4.54 7.08 45.56 0.32 4.86 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.08 1.15 7.17 -51.93 -0.37 0.77 16 27 H 0.05 0.98 8.13 -51.93 -0.42 0.55 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.27 7.34 8.29 -40.82 -0.34 7.00 16 30 H 0.04 0.72 6.17 -51.93 -0.32 0.40 16 31 H 0.06 1.32 7.93 -51.93 -0.41 0.90 16 LS Contribution 257.63 15.07 3.88 3.88 Total: -1.00 -34.62 257.63 -5.76 -40.38 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -3.63 Total: 2.77 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: -0.72 Total: 2.99 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.09 Total: -38.27 kcal Atomic # 8 Polarization: -26.68 SS G_CDS: -0.35 Total: -27.03 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.03 Total: 15.27 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.62 -5.76 -40.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161844179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.426 kcal (2) G-P(sol) polarization free energy of solvation -34.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds