Wall clock time and date at job start Sun Mar 29 2020 21:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46641 * 2 1 4 4 O 1.42897 * 109.47203 * 119.99756 * 2 1 3 5 5 C 1.52998 * 109.47095 * 239.99794 * 2 1 3 6 6 H 1.09005 * 110.91733 * 62.45087 * 5 2 1 7 7 C 1.55158 * 111.00241 * 186.34998 * 5 2 1 8 8 C 1.54323 * 102.94451 * 153.57777 * 7 5 2 9 9 N 1.47291 * 107.30410 * 337.81763 * 8 7 5 10 10 C 1.34773 * 125.79577 * 178.92804 * 9 8 7 11 11 O 1.21684 * 120.00574 * 180.02562 * 10 9 8 12 12 C 1.46380 * 120.00116 * 359.97438 * 10 9 8 13 13 H 1.08000 * 119.99474 * 353.84418 * 12 10 9 14 14 C 1.40041 * 120.00262 * 173.83675 * 12 10 9 15 15 N 1.30670 * 120.00097 * 6.13426 * 14 12 10 16 16 Si 1.86805 * 119.99907 * 186.13185 * 14 12 10 17 17 H 1.48499 * 109.47012 * 94.98403 * 16 14 12 18 18 H 1.48498 * 109.46804 * 214.98694 * 16 14 12 19 19 H 1.48499 * 109.47046 * 334.98338 * 16 14 12 20 20 C 1.47426 * 108.56001 * 358.92620 * 9 8 7 21 21 H 1.08999 * 109.46641 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.47221 * 300.00353 * 1 2 3 23 23 H 1.09005 * 109.46874 * 60.00690 * 1 2 3 24 24 H 0.96703 * 114.00103 * 59.99793 * 4 2 1 25 25 H 1.09006 * 110.72164 * 271.94026 * 7 5 2 26 26 H 1.08999 * 110.72327 * 35.03488 * 7 5 2 27 27 H 1.09003 * 109.88512 * 97.21902 * 8 7 5 28 28 H 1.08998 * 109.88365 * 218.38979 * 8 7 5 29 29 H 0.97000 * 119.99958 * 180.02562 * 15 14 12 30 30 H 1.09006 * 110.36521 * 265.26389 * 20 9 8 31 31 H 1.08994 * 110.37225 * 143.05047 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0401 -0.7213 -1.2492 6 1 1.7258 -0.2014 -2.1543 7 6 3.5827 -0.8822 -1.2076 8 6 3.8234 -2.1330 -2.0789 9 7 2.5663 -2.9001 -2.1010 10 6 2.3566 -4.0508 -2.7706 11 8 1.2711 -4.5980 -2.7152 12 6 3.4343 -4.6418 -3.5655 13 1 4.3637 -4.1077 -3.6968 14 6 3.2602 -5.8999 -4.1555 15 7 2.0974 -6.4932 -4.0984 16 14 4.6905 -6.7299 -5.0244 17 1 5.3697 -7.6575 -4.0845 18 1 4.1840 -7.4928 -6.1934 19 1 5.6547 -5.6992 -5.4861 20 6 1.5736 -2.1984 -1.2669 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 1.7211 -1.5952 1.2330 25 1 4.0733 -0.0104 -1.6405 26 1 3.9257 -1.0485 -0.1864 27 1 4.0918 -1.8331 -3.0919 28 1 4.6196 -2.7387 -1.6461 29 1 1.9769 -7.3647 -4.5067 30 1 1.5702 -2.6072 -0.2564 31 1 0.5813 -2.2775 -1.7107 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161844179.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:27 Heat of formation + Delta-G solvation = -123.742879 kcal Electronic energy + Delta-G solvation = -14592.986537 eV Core-core repulsion = 12065.755960 eV Total energy + Delta-G solvation = -2527.230576 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.63355 -38.70053 -36.75338 -34.69045 -32.85140 -31.03666 -29.54926 -27.98219 -25.20118 -22.97691 -21.54954 -20.70284 -18.69686 -17.82794 -17.63004 -16.76850 -16.16187 -15.89742 -15.31993 -14.85120 -14.49342 -14.32598 -13.85035 -13.43484 -13.22288 -13.05885 -12.81315 -12.72642 -12.66671 -12.45493 -12.06536 -11.98137 -11.59282 -11.40105 -10.96991 -10.86511 -9.92685 -9.12250 -8.34784 -6.89372 1.37492 1.38871 1.55208 2.21297 2.40411 2.83201 3.46536 3.52080 3.57717 3.75523 4.02144 4.26676 4.31663 4.41452 4.45427 4.61020 4.78911 4.92150 4.97275 5.01003 5.14315 5.16858 5.28332 5.31717 5.42952 5.61789 6.00532 6.38908 6.74032 6.82391 7.43107 8.40445 8.62270 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.057822 B = 0.007618 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 484.128195 B = 3674.672224 C = 3984.053199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.122 3.878 3 H 0.122 0.878 4 O -0.573 6.573 5 C -0.123 4.123 6 H 0.092 0.908 7 C -0.110 4.110 8 C 0.112 3.888 9 N -0.655 5.655 10 C 0.550 3.450 11 O -0.634 6.634 12 C -0.567 4.567 13 H 0.085 0.915 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 1.000 3.000 17 H -0.262 1.262 18 H -0.270 1.270 19 H -0.248 1.248 20 C 0.115 3.885 21 H 0.047 0.953 22 H 0.073 0.927 23 H 0.074 0.926 24 H 0.379 0.621 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.051 0.949 28 H 0.050 0.950 29 H 0.276 0.724 30 H 0.048 0.952 31 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.639 12.217 5.364 13.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.063 3.937 3 H 0.140 0.860 4 O -0.381 6.381 5 C -0.143 4.143 6 H 0.110 0.890 7 C -0.148 4.148 8 C -0.011 4.011 9 N -0.392 5.392 10 C 0.357 3.643 11 O -0.522 6.522 12 C -0.603 4.603 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.452 5.452 16 Si 0.818 3.182 17 H -0.186 1.186 18 H -0.195 1.195 19 H -0.171 1.171 20 C -0.009 4.009 21 H 0.066 0.934 22 H 0.092 0.908 23 H 0.093 0.907 24 H 0.229 0.771 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.197 12.292 5.424 13.810 hybrid contribution -0.164 -1.327 -0.625 1.476 sum 3.033 10.965 4.799 12.347 Atomic orbital electron populations 1.22505 0.95938 1.02381 1.03448 1.21808 0.93131 0.96459 0.82299 0.86008 1.86498 1.77594 1.29909 1.44083 1.23075 0.96674 0.93866 1.00646 0.88977 1.22613 0.94927 0.96631 1.00607 1.21895 0.86853 0.92717 0.99612 1.48594 1.13751 1.24991 1.51902 1.18419 0.88361 0.78242 0.79267 1.90542 1.28924 1.63557 1.69187 1.21400 1.01130 1.04540 1.33263 0.89651 1.27036 0.99352 0.97347 0.94997 1.70192 1.25539 1.14069 1.35372 0.84985 0.77050 0.78432 0.77704 1.18626 1.19461 1.17089 1.21949 0.92605 0.92394 0.93931 0.93433 0.90771 0.90710 0.77124 0.87912 0.89599 0.93054 0.93177 0.91422 0.93446 0.94344 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.74 9.33 71.98 0.67 -3.07 16 2 C 0.12 2.62 3.54 30.60 0.11 2.72 16 3 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 4 O -0.57 -13.81 12.26 -148.98 -1.83 -15.63 16 5 C -0.12 -3.32 2.99 -9.40 -0.03 -3.35 16 6 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 7 C -0.11 -2.89 6.36 31.78 0.20 -2.69 16 8 C 0.11 4.14 6.09 86.68 0.53 4.66 16 9 N -0.65 -31.17 3.34 -816.19 -2.72 -33.89 16 10 C 0.55 33.47 7.78 86.36 0.67 34.14 16 11 O -0.63 -44.26 15.30 -4.30 -0.07 -44.32 16 12 C -0.57 -33.23 9.05 24.83 0.22 -33.01 16 13 H 0.09 4.54 7.18 -2.91 -0.02 4.52 16 14 C 0.03 1.58 5.49 85.30 0.47 2.05 16 15 N -0.82 -51.36 11.85 21.83 0.26 -51.10 16 16 Si 1.00 41.55 29.56 68.60 2.03 43.58 16 17 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.25 -9.54 7.11 99.48 0.71 -8.83 16 20 C 0.11 4.41 5.28 86.85 0.46 4.87 16 21 H 0.05 1.11 7.27 -2.39 -0.02 1.09 16 22 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 24 H 0.38 8.63 7.08 -74.05 -0.52 8.10 16 25 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 26 H 0.09 2.20 7.17 -2.39 -0.02 2.18 16 27 H 0.05 1.88 8.13 -2.39 -0.02 1.86 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.28 15.49 8.29 -92.71 -0.77 14.73 16 30 H 0.05 1.74 6.17 -2.38 -0.01 1.72 16 31 H 0.04 1.65 7.93 -2.39 -0.02 1.63 16 Total: -1.00 -78.27 257.63 1.58 -76.69 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.60 Total: 18.36 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 3.31 Total: 6.32 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -2.46 Total: -84.99 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -1.89 Total: -59.95 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -78.27 1.58 -76.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161844179.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.051 kcal (2) G-P(sol) polarization free energy of solvation -78.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds