Wall clock time and date at job start Sun Mar 29 2020 21:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 110.42256 * 2 1 4 4 C 1.54475 * 110.37131 * 122.31185 * 2 1 3 5 5 C 1.54515 * 104.06575 * 142.81200 * 4 2 1 6 6 H 1.09004 * 110.62432 * 241.29595 * 5 4 2 7 7 C 1.50694 * 110.51200 * 118.64321 * 5 4 2 8 8 O 1.21290 * 120.00301 * 3.90851 * 7 5 4 9 9 N 1.34778 * 119.99802 * 183.90183 * 7 5 4 10 10 C 1.46497 * 119.99978 * 0.02562 * 9 7 5 11 11 C 1.37102 * 119.99784 * 179.97438 * 9 7 5 12 12 H 1.07999 * 120.00161 * 22.06926 * 11 9 7 13 13 C 1.38953 * 119.99704 * 202.06128 * 11 9 7 14 14 N 1.31411 * 119.99955 * 15.04148 * 13 11 9 15 15 Si 1.86802 * 119.99769 * 195.03499 * 13 11 9 16 16 H 1.48495 * 109.47274 * 60.00125 * 15 13 11 17 17 H 1.48498 * 109.46904 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46954 * 300.00043 * 15 13 11 19 19 C 1.54479 * 104.06064 * 359.97438 * 5 4 2 20 20 O 1.44423 * 110.37227 * 237.68826 * 2 1 3 21 21 H 1.09002 * 109.47138 * 180.85450 * 1 2 3 22 22 H 1.08995 * 109.47392 * 300.85559 * 1 2 3 23 23 H 1.09005 * 109.47188 * 60.85960 * 1 2 3 24 24 H 1.09004 * 110.51435 * 24.16409 * 4 2 1 25 25 H 1.09004 * 110.63093 * 261.51300 * 4 2 1 26 26 H 1.08996 * 109.47125 * 89.32419 * 10 9 7 27 27 H 1.09001 * 109.47090 * 209.31720 * 10 9 7 28 28 H 1.08995 * 109.47024 * 329.32406 * 10 9 7 29 29 H 0.97006 * 119.99621 * 180.02562 * 14 13 11 30 30 H 1.08989 * 110.37565 * 217.19033 * 19 5 4 31 31 H 1.09009 * 110.46056 * 94.90048 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0677 -0.7741 1.2239 5 6 3.3178 -1.5057 0.6859 6 1 3.1979 -2.5856 0.7732 7 6 4.5525 -1.0517 1.4209 8 8 4.4558 -0.2730 2.3457 9 7 5.7642 -1.5110 1.0505 10 6 5.8811 -2.4512 -0.0669 11 6 6.8876 -1.0975 1.7189 12 1 6.8065 -0.7119 2.7244 13 6 8.1306 -1.1748 1.1025 14 7 8.2097 -1.3568 -0.1965 15 14 9.6891 -1.0199 2.1206 16 1 9.7254 -2.1010 3.1379 17 1 10.8738 -1.1352 1.2327 18 1 9.7072 0.3003 2.8003 19 6 3.3870 -1.0876 -0.7996 20 8 2.0327 -0.7237 -1.1442 21 1 -0.3633 -1.0276 0.0153 22 1 -0.3634 0.5270 0.8822 23 1 -0.3634 0.5004 -0.8976 24 1 1.3274 -1.4920 1.5772 25 1 2.3425 -0.0858 2.0232 26 1 5.9972 -1.8964 -0.9979 27 1 6.7505 -3.0907 0.0858 28 1 4.9826 -3.0659 -0.1199 29 1 9.0774 -1.4111 -0.6267 30 1 3.7238 -1.9228 -1.4136 31 1 4.0524 -0.2332 -0.9244 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162081055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:50 Heat of formation + Delta-G solvation = -99.768159 kcal Electronic energy + Delta-G solvation = -14814.547411 eV Core-core repulsion = 12288.356457 eV Total energy + Delta-G solvation = -2526.190954 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29495 -39.37414 -36.74762 -33.91302 -33.18552 -32.39135 -28.33720 -26.91687 -26.51757 -23.81590 -22.23267 -20.35217 -18.95512 -18.38253 -17.15183 -16.68643 -16.64869 -15.95579 -15.80053 -15.51200 -14.52678 -14.19232 -13.79152 -13.39584 -13.29592 -13.22489 -12.99934 -12.85366 -12.62786 -12.33123 -12.22775 -12.14933 -11.75282 -11.70200 -11.03772 -10.80356 -10.36912 -9.73019 -8.37611 -6.00994 1.37146 1.40278 1.50795 1.95047 2.25445 2.78937 3.04477 3.13338 3.56935 3.79867 3.92353 4.09298 4.20820 4.31195 4.45647 4.58212 4.68390 4.78522 4.88121 4.96357 5.02813 5.10406 5.12886 5.29590 5.33232 5.42467 5.81841 6.06094 6.44401 7.12595 7.42639 7.97986 8.65106 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.062014 B = 0.008122 C = 0.007557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.401481 B = 3446.407743 C = 3704.178332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.064 3.936 3 H 0.054 0.946 4 C -0.135 4.135 5 C -0.128 4.128 6 H 0.118 0.882 7 C 0.441 3.559 8 O -0.631 6.631 9 N -0.457 5.457 10 C 0.117 3.883 11 C -0.351 4.351 12 H 0.071 0.929 13 C 0.000 4.000 14 N -0.892 5.892 15 Si 0.989 3.011 16 H -0.267 1.267 17 H -0.269 1.269 18 H -0.277 1.277 19 C 0.067 3.933 20 O -0.380 6.380 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.068 0.932 24 H 0.100 0.900 25 H 0.073 0.927 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.275 0.725 30 H 0.118 0.882 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.219 -2.720 -2.587 9.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.007 3.993 3 H 0.072 0.928 4 C -0.173 4.173 5 C -0.150 4.150 6 H 0.136 0.864 7 C 0.230 3.770 8 O -0.519 6.519 9 N -0.175 5.175 10 C -0.026 4.026 11 C -0.479 4.479 12 H 0.089 0.911 13 C -0.202 4.202 14 N -0.530 5.530 15 Si 0.813 3.187 16 H -0.192 1.192 17 H -0.193 1.193 18 H -0.203 1.203 19 C -0.010 4.010 20 O -0.299 6.299 21 H 0.091 0.909 22 H 0.104 0.896 23 H 0.087 0.913 24 H 0.118 0.882 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.136 0.864 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.197 -2.440 -2.523 9.844 hybrid contribution 1.322 0.297 0.598 1.481 sum -7.876 -2.143 -1.925 8.386 Atomic orbital electron populations 1.21771 0.90400 1.03673 1.03401 1.23151 0.97200 0.94777 0.84209 0.92760 1.22947 0.95333 1.00203 0.98831 1.22503 0.93342 1.03042 0.96109 0.86391 1.20681 0.85605 0.83742 0.86957 1.90440 1.86801 1.40278 1.34379 1.43816 1.05045 1.38572 1.30072 1.21563 1.00250 0.91869 0.88907 1.19597 0.85449 1.44181 0.98697 0.91085 1.26076 1.01771 0.95747 0.96620 1.70063 1.26783 1.47314 1.08877 0.85065 0.76752 0.78850 0.78081 1.19156 1.19316 1.20298 1.23339 0.84181 1.00193 0.93303 1.89057 1.26863 1.74699 1.39277 0.90948 0.89571 0.91308 0.88191 0.90791 0.93188 0.92601 0.91267 0.91523 0.86439 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 9.52 71.98 0.69 -2.20 16 2 C 0.06 1.91 3.92 31.09 0.12 2.04 16 3 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.14 -4.43 6.21 31.61 0.20 -4.24 16 5 C -0.13 -4.73 2.59 -10.52 -0.03 -4.76 16 6 H 0.12 3.73 7.49 -2.38 -0.02 3.71 16 7 C 0.44 21.88 6.92 87.66 0.61 22.48 16 8 O -0.63 -36.23 14.98 -3.06 -0.05 -36.28 16 9 N -0.46 -23.76 3.02 -658.91 -1.99 -25.74 16 10 C 0.12 5.08 7.23 127.77 0.92 6.00 16 11 C -0.35 -20.17 9.28 84.04 0.78 -19.39 16 12 H 0.07 4.36 7.42 -2.91 -0.02 4.34 16 13 C 0.00 0.02 5.02 84.93 0.43 0.44 16 14 N -0.89 -47.10 10.81 21.66 0.23 -46.86 16 15 Si 0.99 42.39 29.58 68.60 2.03 44.42 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 18 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 19 C 0.07 2.33 5.78 72.48 0.42 2.75 16 20 O -0.38 -12.48 11.34 -148.98 -1.69 -14.17 16 21 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 22 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.10 2.66 7.86 -2.38 -0.02 2.65 16 25 H 0.07 2.85 6.51 -2.38 -0.02 2.84 16 26 H 0.05 2.22 7.38 -2.39 -0.02 2.20 16 27 H 0.06 2.57 6.94 -2.39 -0.02 2.55 16 28 H 0.07 2.38 5.97 -2.39 -0.01 2.36 16 29 H 0.28 13.58 8.31 -92.70 -0.77 12.81 16 30 H 0.12 3.52 7.06 -2.39 -0.02 3.51 16 31 H 0.04 1.50 7.86 -2.38 -0.02 1.48 16 Total: -1.00 -66.67 252.86 3.79 -62.89 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 1.11 Total: 12.62 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 4.13 Total: 3.12 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.75 Total: -72.61 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -1.74 Total: -50.44 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -66.67 3.79 -62.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162081055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.880 kcal (2) G-P(sol) polarization free energy of solvation -66.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds