Wall clock time and date at job start Sun Mar 29 2020 21:45:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.09011 * 110.32807 * 2 1
4 4 C 1.54475 * 110.37540 * 237.75230 * 2 1 3
5 5 C 1.54508 * 104.06071 * 217.19104 * 4 2 1
6 6 H 1.09001 * 110.51195 * 118.78232 * 5 4 2
7 7 C 1.50707 * 110.51079 * 241.35001 * 5 4 2
8 8 O 1.21294 * 119.99339 * 27.43950 * 7 5 4
9 9 N 1.34773 * 120.00332 * 207.43904 * 7 5 4
10 10 C 1.46506 * 119.99838 * 5.82866 * 9 7 5
11 11 C 1.37091 * 120.00268 * 185.83335 * 9 7 5
12 12 H 1.08000 * 119.99688 * 328.67173 * 11 9 7
13 13 C 1.38950 * 120.00240 * 148.67474 * 11 9 7
14 14 N 1.31414 * 120.00088 * 160.35325 * 13 11 9
15 15 Si 1.86800 * 119.99938 * 340.34525 * 13 11 9
16 16 H 1.48498 * 109.46791 * 94.57767 * 15 13 11
17 17 H 1.48501 * 109.47361 * 214.58021 * 15 13 11
18 18 H 1.48500 * 109.47214 * 334.58213 * 15 13 11
19 19 C 1.54474 * 104.06362 * 359.97438 * 5 4 2
20 20 O 1.44425 * 110.36952 * 122.36531 * 2 1 3
21 21 H 1.08998 * 109.46879 * 182.24757 * 1 2 3
22 22 H 1.09005 * 109.46733 * 62.25134 * 1 2 3
23 23 H 1.08998 * 109.47458 * 302.25259 * 1 2 3
24 24 H 1.09000 * 110.51198 * 335.83368 * 4 2 1
25 25 H 1.08997 * 110.51695 * 98.40731 * 4 2 1
26 26 H 1.09005 * 109.47036 * 60.31505 * 10 9 7
27 27 H 1.08998 * 109.47144 * 180.31415 * 10 9 7
28 28 H 1.08996 * 109.47064 * 300.31421 * 10 9 7
29 29 H 0.96997 * 119.99693 * 179.97438 * 14 13 11
30 30 H 1.08997 * 110.37087 * 142.81517 * 19 5 4
31 31 H 1.08998 * 110.37394 * 265.14586 * 19 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9087 1.0222 0.0000
4 6 2.0679 -0.7727 -1.2247
5 6 3.3178 -1.5049 -0.6873
6 1 3.1966 -2.5843 -0.7780
7 6 4.5527 -1.0501 -1.4218
8 8 4.5952 0.0610 -1.9066
9 7 5.6098 -1.8777 -1.5399
10 6 5.5131 -3.2613 -1.0677
11 6 6.7754 -1.4251 -2.1018
12 1 6.7456 -0.6666 -2.8700
13 6 7.9952 -1.9422 -1.6830
14 7 9.0577 -1.8200 -2.4466
15 14 8.1249 -2.8109 -0.0344
16 1 7.9646 -4.2740 -0.2319
17 1 9.4543 -2.5353 0.5673
18 1 7.0587 -2.3142 0.8721
19 6 3.3877 -1.0874 0.7983
20 8 2.0327 -0.7248 1.1436
21 1 -0.3633 -1.0269 0.0403
22 1 -0.3633 0.4785 -0.9095
23 1 -0.3634 0.5484 0.8691
24 1 1.3277 -1.4902 -1.5788
25 1 2.3408 -0.0819 -2.0225
26 1 4.7195 -3.7756 -1.6097
27 1 6.4608 -3.7712 -1.2407
28 1 5.2872 -3.2663 -0.0014
29 1 9.9093 -2.1807 -2.1541
30 1 3.7245 -1.9230 1.4118
31 1 4.0529 -0.2328 0.9214
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000162081183.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:45:53
Heat of formation + Delta-G solvation = -72.209356 kcal
Electronic energy + Delta-G solvation = -14823.233158 eV
Core-core repulsion = 12298.237244 eV
Total energy + Delta-G solvation = -2524.995915 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 213.115 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-39.84653 -37.92977 -34.90665 -32.25126 -32.00027 -31.20880 -26.58624 -25.98925
-25.11920 -22.22429 -21.00441 -18.60820 -17.12038 -16.77490 -15.96534 -15.42573
-15.20052 -14.68668 -14.31745 -13.47953 -13.07433 -12.88333 -12.62133 -12.38000
-12.24588 -12.07674 -11.77298 -11.59615 -11.00932 -10.70573 -10.63399 -10.51600
-10.31087 -9.93211 -9.57820 -9.20345 -8.56939 -7.85290 -6.42320 -3.97384
2.98929 3.17484 3.19780 3.57445 4.01701 4.09458 4.40429 4.84807
4.90354 5.01081 5.23736 5.35137 5.43317 5.50363 5.63754 5.71610
5.81248 5.87861 5.92565 6.01607 6.09213 6.14088 6.23037 6.27163
6.34998 7.01313 7.48257 8.20907 8.45456 8.90394 9.28173 9.69872
10.69819
Molecular weight = 213.12amu
Principal moments of inertia in cm(-1)
A = 0.053927 B = 0.009047 C = 0.008353
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 519.092544 B = 3094.227039 C = 3351.378018
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C 0.070 3.930
3 H 0.071 0.929
4 C -0.135 4.135
5 C -0.142 4.142
6 H 0.092 0.908
7 C 0.469 3.531
8 O -0.564 6.564
9 N -0.467 5.467
10 C 0.057 3.943
11 C -0.318 4.318
12 H 0.110 0.890
13 C 0.054 3.946
14 N -0.866 5.866
15 Si 0.882 3.118
16 H -0.276 1.276
17 H -0.288 1.288
18 H -0.264 1.264
19 C 0.065 3.935
20 O -0.376 6.376
21 H 0.061 0.939
22 H 0.069 0.931
23 H 0.059 0.941
24 H 0.072 0.928
25 H 0.094 0.906
26 H 0.055 0.945
27 H 0.079 0.921
28 H 0.048 0.952
29 H 0.274 0.726
30 H 0.092 0.908
31 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.059 -2.739 5.851 13.681
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C 0.012 3.988
3 H 0.089 0.911
4 C -0.173 4.173
5 C -0.164 4.164
6 H 0.110 0.890
7 C 0.257 3.743
8 O -0.446 6.446
9 N -0.188 5.188
10 C -0.087 4.087
11 C -0.445 4.445
12 H 0.128 0.872
13 C -0.151 4.151
14 N -0.502 5.502
15 Si 0.710 3.290
16 H -0.203 1.203
17 H -0.215 1.215
18 H -0.189 1.189
19 C -0.013 4.013
20 O -0.295 6.295
21 H 0.080 0.920
22 H 0.088 0.912
23 H 0.078 0.922
24 H 0.091 0.909
25 H 0.112 0.888
26 H 0.073 0.927
27 H 0.098 0.902
28 H 0.066 0.934
29 H 0.085 0.915
30 H 0.110 0.890
31 H 0.084 0.916
Dipole moment (debyes) X Y Z Total
from point charges -11.917 -2.267 5.755 13.427
hybrid contribution 0.521 -0.668 0.676 1.083
sum -11.396 -2.935 6.431 13.411
Atomic orbital electron populations
1.21790 0.93523 1.02602 1.02149 1.22999 0.94735 0.95951 0.85087
0.91124 1.22921 0.95488 0.99768 0.99132 1.22650 0.95430 1.01777
0.96553 0.88974 1.19830 0.84995 0.85367 0.84141 1.90538 1.82274
1.21095 1.50684 1.43693 1.12665 1.07783 1.54633 1.22057 1.02811
0.85527 0.98272 1.19179 0.81261 1.24656 1.19421 0.87234 1.25342
0.95107 0.97104 0.97580 1.69735 1.01008 1.44004 1.35500 0.86956
0.77978 0.79082 0.85002 1.20309 1.21476 1.18877 1.23212 0.84523
1.00388 0.93150 1.89063 1.27156 1.74587 1.38737 0.91958 0.91206
0.92172 0.90905 0.88761 0.92660 0.90239 0.93371 0.91530 0.88983
0.91568
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.62 9.52 37.16 0.35 -1.26 16
2 C 0.07 1.03 3.92 -25.96 -0.10 0.93 16
3 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16
4 C -0.14 -2.13 6.14 -25.17 -0.15 -2.28 16
5 C -0.14 -2.51 2.88 -90.20 -0.26 -2.77 16
6 H 0.09 1.43 6.64 -51.93 -0.34 1.09 16
7 C 0.47 10.87 6.62 -10.98 -0.07 10.80 16
8 O -0.56 -15.13 15.48 5.55 0.09 -15.05 16
9 N -0.47 -11.32 2.71 -122.19 -0.33 -11.65 16
10 C 0.06 1.11 7.13 59.85 0.43 1.54 16
11 C -0.32 -9.05 9.56 -14.94 -0.14 -9.19 16
12 H 0.11 3.52 7.73 -52.49 -0.41 3.11 16
13 C 0.05 1.48 5.22 -17.47 -0.09 1.39 16
14 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16
15 Si 0.88 20.22 24.47 -169.99 -4.16 16.07 16
16 H -0.28 -5.86 6.71 56.52 0.38 -5.48 16
17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
18 H -0.26 -5.88 6.74 56.52 0.38 -5.50 16
19 C 0.06 1.09 7.17 37.93 0.27 1.36 16
20 O -0.38 -6.15 11.35 -35.23 -0.40 -6.55 16
21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
24 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16
25 H 0.09 1.66 6.88 -51.93 -0.36 1.30 16
26 H 0.05 0.90 7.64 -51.93 -0.40 0.51 16
27 H 0.08 1.64 4.31 -51.93 -0.22 1.41 16
28 H 0.05 0.83 7.28 -51.93 -0.38 0.45 16
29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16
30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16
31 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16
LS Contribution 251.89 15.07 3.80 3.80
Total: -1.00 -31.65 251.89 -4.22 -35.87
By element:
Atomic # 1 Polarization: 5.51 SS G_CDS: -4.22 Total: 1.29 kcal
Atomic # 6 Polarization: 0.28 SS G_CDS: 0.23 Total: 0.51 kcal
Atomic # 7 Polarization: -36.37 SS G_CDS: 0.44 Total: -35.92 kcal
Atomic # 8 Polarization: -21.29 SS G_CDS: -0.31 Total: -21.60 kcal
Atomic # 14 Polarization: 20.22 SS G_CDS: -4.16 Total: 16.07 kcal
Total LS contribution 3.80 Total: 3.80 kcal
Total: -31.65 -4.22 -35.87 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000162081183.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal
(2) G-P(sol) polarization free energy of solvation -31.649 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.209 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds