Wall clock time and date at job start Sun Mar 29 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09011 * 110.32807 * 2 1 4 4 C 1.54475 * 110.37540 * 237.75230 * 2 1 3 5 5 C 1.54508 * 104.06071 * 217.19104 * 4 2 1 6 6 H 1.09001 * 110.51195 * 118.78232 * 5 4 2 7 7 C 1.50707 * 110.51079 * 241.35001 * 5 4 2 8 8 O 1.21294 * 119.99339 * 27.43950 * 7 5 4 9 9 N 1.34773 * 120.00332 * 207.43904 * 7 5 4 10 10 C 1.46506 * 119.99838 * 5.82866 * 9 7 5 11 11 C 1.37091 * 120.00268 * 185.83335 * 9 7 5 12 12 H 1.08000 * 119.99688 * 328.67173 * 11 9 7 13 13 C 1.38950 * 120.00240 * 148.67474 * 11 9 7 14 14 N 1.31414 * 120.00088 * 160.35325 * 13 11 9 15 15 Si 1.86800 * 119.99938 * 340.34525 * 13 11 9 16 16 H 1.48498 * 109.46791 * 94.57767 * 15 13 11 17 17 H 1.48501 * 109.47361 * 214.58021 * 15 13 11 18 18 H 1.48500 * 109.47214 * 334.58213 * 15 13 11 19 19 C 1.54474 * 104.06362 * 359.97438 * 5 4 2 20 20 O 1.44425 * 110.36952 * 122.36531 * 2 1 3 21 21 H 1.08998 * 109.46879 * 182.24757 * 1 2 3 22 22 H 1.09005 * 109.46733 * 62.25134 * 1 2 3 23 23 H 1.08998 * 109.47458 * 302.25259 * 1 2 3 24 24 H 1.09000 * 110.51198 * 335.83368 * 4 2 1 25 25 H 1.08997 * 110.51695 * 98.40731 * 4 2 1 26 26 H 1.09005 * 109.47036 * 60.31505 * 10 9 7 27 27 H 1.08998 * 109.47144 * 180.31415 * 10 9 7 28 28 H 1.08996 * 109.47064 * 300.31421 * 10 9 7 29 29 H 0.96997 * 119.99693 * 179.97438 * 14 13 11 30 30 H 1.08997 * 110.37087 * 142.81517 * 19 5 4 31 31 H 1.08998 * 110.37394 * 265.14586 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0679 -0.7727 -1.2247 5 6 3.3178 -1.5049 -0.6873 6 1 3.1966 -2.5843 -0.7780 7 6 4.5527 -1.0501 -1.4218 8 8 4.5952 0.0610 -1.9066 9 7 5.6098 -1.8777 -1.5399 10 6 5.5131 -3.2613 -1.0677 11 6 6.7754 -1.4251 -2.1018 12 1 6.7456 -0.6666 -2.8700 13 6 7.9952 -1.9422 -1.6830 14 7 9.0577 -1.8200 -2.4466 15 14 8.1249 -2.8109 -0.0344 16 1 7.9646 -4.2740 -0.2319 17 1 9.4543 -2.5353 0.5673 18 1 7.0587 -2.3142 0.8721 19 6 3.3877 -1.0874 0.7983 20 8 2.0327 -0.7248 1.1436 21 1 -0.3633 -1.0269 0.0403 22 1 -0.3633 0.4785 -0.9095 23 1 -0.3634 0.5484 0.8691 24 1 1.3277 -1.4902 -1.5788 25 1 2.3408 -0.0819 -2.0225 26 1 4.7195 -3.7756 -1.6097 27 1 6.4608 -3.7712 -1.2407 28 1 5.2872 -3.2663 -0.0014 29 1 9.9093 -2.1807 -2.1541 30 1 3.7245 -1.9230 1.4118 31 1 4.0529 -0.2328 0.9214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162081183.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:53 Heat of formation + Delta-G solvation = -72.209356 kcal Electronic energy + Delta-G solvation = -14823.233158 eV Core-core repulsion = 12298.237244 eV Total energy + Delta-G solvation = -2524.995915 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.84653 -37.92977 -34.90665 -32.25126 -32.00027 -31.20880 -26.58624 -25.98925 -25.11920 -22.22429 -21.00441 -18.60820 -17.12038 -16.77490 -15.96534 -15.42573 -15.20052 -14.68668 -14.31745 -13.47953 -13.07433 -12.88333 -12.62133 -12.38000 -12.24588 -12.07674 -11.77298 -11.59615 -11.00932 -10.70573 -10.63399 -10.51600 -10.31087 -9.93211 -9.57820 -9.20345 -8.56939 -7.85290 -6.42320 -3.97384 2.98929 3.17484 3.19780 3.57445 4.01701 4.09458 4.40429 4.84807 4.90354 5.01081 5.23736 5.35137 5.43317 5.50363 5.63754 5.71610 5.81248 5.87861 5.92565 6.01607 6.09213 6.14088 6.23037 6.27163 6.34998 7.01313 7.48257 8.20907 8.45456 8.90394 9.28173 9.69872 10.69819 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053927 B = 0.009047 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.092544 B = 3094.227039 C = 3351.378018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.070 3.930 3 H 0.071 0.929 4 C -0.135 4.135 5 C -0.142 4.142 6 H 0.092 0.908 7 C 0.469 3.531 8 O -0.564 6.564 9 N -0.467 5.467 10 C 0.057 3.943 11 C -0.318 4.318 12 H 0.110 0.890 13 C 0.054 3.946 14 N -0.866 5.866 15 Si 0.882 3.118 16 H -0.276 1.276 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.065 3.935 20 O -0.376 6.376 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.274 0.726 30 H 0.092 0.908 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 -2.739 5.851 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.012 3.988 3 H 0.089 0.911 4 C -0.173 4.173 5 C -0.164 4.164 6 H 0.110 0.890 7 C 0.257 3.743 8 O -0.446 6.446 9 N -0.188 5.188 10 C -0.087 4.087 11 C -0.445 4.445 12 H 0.128 0.872 13 C -0.151 4.151 14 N -0.502 5.502 15 Si 0.710 3.290 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.189 1.189 19 C -0.013 4.013 20 O -0.295 6.295 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.073 0.927 27 H 0.098 0.902 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.917 -2.267 5.755 13.427 hybrid contribution 0.521 -0.668 0.676 1.083 sum -11.396 -2.935 6.431 13.411 Atomic orbital electron populations 1.21790 0.93523 1.02602 1.02149 1.22999 0.94735 0.95951 0.85087 0.91124 1.22921 0.95488 0.99768 0.99132 1.22650 0.95430 1.01777 0.96553 0.88974 1.19830 0.84995 0.85367 0.84141 1.90538 1.82274 1.21095 1.50684 1.43693 1.12665 1.07783 1.54633 1.22057 1.02811 0.85527 0.98272 1.19179 0.81261 1.24656 1.19421 0.87234 1.25342 0.95107 0.97104 0.97580 1.69735 1.01008 1.44004 1.35500 0.86956 0.77978 0.79082 0.85002 1.20309 1.21476 1.18877 1.23212 0.84523 1.00388 0.93150 1.89063 1.27156 1.74587 1.38737 0.91958 0.91206 0.92172 0.90905 0.88761 0.92660 0.90239 0.93371 0.91530 0.88983 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.52 37.16 0.35 -1.26 16 2 C 0.07 1.03 3.92 -25.96 -0.10 0.93 16 3 H 0.07 1.08 8.14 -51.92 -0.42 0.66 16 4 C -0.14 -2.13 6.14 -25.17 -0.15 -2.28 16 5 C -0.14 -2.51 2.88 -90.20 -0.26 -2.77 16 6 H 0.09 1.43 6.64 -51.93 -0.34 1.09 16 7 C 0.47 10.87 6.62 -10.98 -0.07 10.80 16 8 O -0.56 -15.13 15.48 5.55 0.09 -15.05 16 9 N -0.47 -11.32 2.71 -122.19 -0.33 -11.65 16 10 C 0.06 1.11 7.13 59.85 0.43 1.54 16 11 C -0.32 -9.05 9.56 -14.94 -0.14 -9.19 16 12 H 0.11 3.52 7.73 -52.49 -0.41 3.11 16 13 C 0.05 1.48 5.22 -17.47 -0.09 1.39 16 14 N -0.87 -25.05 13.96 55.50 0.77 -24.27 16 15 Si 0.88 20.22 24.47 -169.99 -4.16 16.07 16 16 H -0.28 -5.86 6.71 56.52 0.38 -5.48 16 17 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.26 -5.88 6.74 56.52 0.38 -5.50 16 19 C 0.06 1.09 7.17 37.93 0.27 1.36 16 20 O -0.38 -6.15 11.35 -35.23 -0.40 -6.55 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.97 7.87 -51.93 -0.41 0.56 16 25 H 0.09 1.66 6.88 -51.93 -0.36 1.30 16 26 H 0.05 0.90 7.64 -51.93 -0.40 0.51 16 27 H 0.08 1.64 4.31 -51.93 -0.22 1.41 16 28 H 0.05 0.83 7.28 -51.93 -0.38 0.45 16 29 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.07 1.22 7.86 -51.93 -0.41 0.81 16 LS Contribution 251.89 15.07 3.80 3.80 Total: -1.00 -31.65 251.89 -4.22 -35.87 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -4.22 Total: 1.29 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 0.23 Total: 0.51 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.44 Total: -35.92 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.31 Total: -21.60 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -4.16 Total: 16.07 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -31.65 -4.22 -35.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162081183.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.342 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds