Wall clock time and date at job start Sun Mar 29 2020 21:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09011 * 110.32807 * 2 1 4 4 C 1.54475 * 110.37540 * 237.75230 * 2 1 3 5 5 C 1.54508 * 104.06071 * 217.19104 * 4 2 1 6 6 H 1.09001 * 110.51195 * 118.78232 * 5 4 2 7 7 C 1.50707 * 110.51079 * 241.35001 * 5 4 2 8 8 O 1.21294 * 119.99339 * 27.43950 * 7 5 4 9 9 N 1.34773 * 120.00332 * 207.43904 * 7 5 4 10 10 C 1.46506 * 119.99838 * 5.82866 * 9 7 5 11 11 C 1.37091 * 120.00268 * 185.83335 * 9 7 5 12 12 H 1.08000 * 119.99688 * 328.67173 * 11 9 7 13 13 C 1.38950 * 120.00240 * 148.67474 * 11 9 7 14 14 N 1.31414 * 120.00088 * 160.35325 * 13 11 9 15 15 Si 1.86800 * 119.99938 * 340.34525 * 13 11 9 16 16 H 1.48498 * 109.46791 * 94.57767 * 15 13 11 17 17 H 1.48501 * 109.47361 * 214.58021 * 15 13 11 18 18 H 1.48500 * 109.47214 * 334.58213 * 15 13 11 19 19 C 1.54474 * 104.06362 * 359.97438 * 5 4 2 20 20 O 1.44425 * 110.36952 * 122.36531 * 2 1 3 21 21 H 1.08998 * 109.46879 * 182.24757 * 1 2 3 22 22 H 1.09005 * 109.46733 * 62.25134 * 1 2 3 23 23 H 1.08998 * 109.47458 * 302.25259 * 1 2 3 24 24 H 1.09000 * 110.51198 * 335.83368 * 4 2 1 25 25 H 1.08997 * 110.51695 * 98.40731 * 4 2 1 26 26 H 1.09005 * 109.47036 * 60.31505 * 10 9 7 27 27 H 1.08998 * 109.47144 * 180.31415 * 10 9 7 28 28 H 1.08996 * 109.47064 * 300.31421 * 10 9 7 29 29 H 0.96997 * 119.99693 * 179.97438 * 14 13 11 30 30 H 1.08997 * 110.37087 * 142.81517 * 19 5 4 31 31 H 1.08998 * 110.37394 * 265.14586 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0222 0.0000 4 6 2.0679 -0.7727 -1.2247 5 6 3.3178 -1.5049 -0.6873 6 1 3.1966 -2.5843 -0.7780 7 6 4.5527 -1.0501 -1.4218 8 8 4.5952 0.0610 -1.9066 9 7 5.6098 -1.8777 -1.5399 10 6 5.5131 -3.2613 -1.0677 11 6 6.7754 -1.4251 -2.1018 12 1 6.7456 -0.6666 -2.8700 13 6 7.9952 -1.9422 -1.6830 14 7 9.0577 -1.8200 -2.4466 15 14 8.1249 -2.8109 -0.0344 16 1 7.9646 -4.2740 -0.2319 17 1 9.4543 -2.5353 0.5673 18 1 7.0587 -2.3142 0.8721 19 6 3.3877 -1.0874 0.7983 20 8 2.0327 -0.7248 1.1436 21 1 -0.3633 -1.0269 0.0403 22 1 -0.3633 0.4785 -0.9095 23 1 -0.3634 0.5484 0.8691 24 1 1.3277 -1.4902 -1.5788 25 1 2.3408 -0.0819 -2.0225 26 1 4.7195 -3.7756 -1.6097 27 1 6.4608 -3.7712 -1.2407 28 1 5.2872 -3.2663 -0.0014 29 1 9.9093 -2.1807 -2.1541 30 1 3.7245 -1.9230 1.4118 31 1 4.0529 -0.2328 0.9214 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162081183.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:53 Heat of formation + Delta-G solvation = -95.986765 kcal Electronic energy + Delta-G solvation = -14824.264224 eV Core-core repulsion = 12298.237244 eV Total energy + Delta-G solvation = -2526.026981 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36314 -39.51105 -36.82322 -34.23885 -33.25468 -32.55931 -28.29625 -27.41088 -26.72735 -23.76538 -22.23069 -20.29280 -19.11469 -18.41936 -17.60959 -16.74698 -16.64903 -16.10318 -16.01681 -15.20680 -14.69753 -14.43178 -14.13328 -14.05637 -13.65827 -13.35180 -13.04187 -12.86966 -12.55835 -12.34126 -12.24292 -11.83334 -11.76053 -11.69252 -11.16223 -10.83107 -10.43476 -9.81854 -8.53222 -6.15155 1.20524 1.32491 1.45196 1.80544 2.16354 2.56618 2.89205 2.97054 3.59051 3.77665 3.80458 4.06906 4.20964 4.24342 4.31243 4.46853 4.51677 4.65077 4.67093 4.77784 4.85846 4.97270 5.03959 5.10232 5.29577 5.47989 5.79253 5.97930 6.48885 6.87554 7.25133 7.79377 8.64058 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.053927 B = 0.009047 C = 0.008353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.092544 B = 3094.227039 C = 3351.378018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.065 3.935 3 H 0.054 0.946 4 C -0.134 4.134 5 C -0.134 4.134 6 H 0.127 0.873 7 C 0.463 3.537 8 O -0.616 6.616 9 N -0.479 5.479 10 C 0.047 3.953 11 C -0.342 4.342 12 H 0.044 0.956 13 C 0.004 3.996 14 N -0.915 5.915 15 Si 0.958 3.042 16 H -0.238 1.238 17 H -0.293 1.293 18 H -0.248 1.248 19 C 0.066 3.934 20 O -0.376 6.376 21 H 0.073 0.927 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.105 0.895 25 H 0.066 0.934 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.281 0.719 30 H 0.122 0.878 31 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -5.290 8.265 17.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 H 0.072 0.928 4 C -0.172 4.172 5 C -0.156 4.156 6 H 0.145 0.855 7 C 0.253 3.747 8 O -0.502 6.502 9 N -0.200 5.200 10 C -0.095 4.095 11 C -0.469 4.469 12 H 0.062 0.938 13 C -0.198 4.198 14 N -0.553 5.553 15 Si 0.780 3.220 16 H -0.162 1.162 17 H -0.220 1.220 18 H -0.172 1.172 19 C -0.012 4.012 20 O -0.295 6.295 21 H 0.092 0.908 22 H 0.103 0.897 23 H 0.086 0.914 24 H 0.124 0.876 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.928 -4.848 8.165 16.857 hybrid contribution 1.129 0.228 -0.194 1.168 sum -12.799 -4.619 7.970 15.770 Atomic orbital electron populations 1.21781 0.90453 1.03734 1.03382 1.23131 0.97101 0.94844 0.84157 0.92773 1.22957 0.95493 0.99964 0.98787 1.22685 0.92744 1.03832 0.96295 0.85477 1.20857 0.86191 0.84610 0.83064 1.90509 1.83506 1.23556 1.52602 1.43816 1.11395 1.10096 1.54710 1.22357 1.03799 0.82572 1.00792 1.18766 0.84097 1.24597 1.19488 0.93785 1.26255 0.93869 0.97982 1.01654 1.69866 1.01939 1.45701 1.37757 0.85772 0.77980 0.79798 0.78428 1.16186 1.21986 1.17193 1.23218 0.84636 1.00463 0.92850 1.89073 1.26596 1.74597 1.39268 0.90775 0.89666 0.91397 0.87633 0.91492 0.88998 0.91202 0.89906 0.90948 0.85991 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.52 71.98 0.69 -1.94 16 2 C 0.07 1.78 3.92 31.10 0.12 1.91 16 3 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 4 C -0.13 -3.96 6.14 31.61 0.19 -3.76 16 5 C -0.13 -4.39 2.88 -10.52 -0.03 -4.42 16 6 H 0.13 3.29 6.64 -2.39 -0.02 3.28 16 7 C 0.46 21.52 6.62 87.66 0.58 22.10 16 8 O -0.62 -34.78 15.48 -3.07 -0.05 -34.83 16 9 N -0.48 -23.07 2.71 -658.88 -1.78 -24.85 16 10 C 0.05 1.64 7.13 127.77 0.91 2.55 16 11 C -0.34 -20.28 9.56 84.04 0.80 -19.48 16 12 H 0.04 3.10 7.73 -2.91 -0.02 3.08 16 13 C 0.00 0.21 5.22 84.93 0.44 0.66 16 14 N -0.91 -54.74 13.96 21.66 0.30 -54.44 16 15 Si 0.96 40.51 24.47 68.60 1.68 42.19 16 16 H -0.24 -8.61 6.71 99.48 0.67 -7.94 16 17 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.25 -9.79 6.74 99.48 0.67 -9.12 16 19 C 0.07 2.03 7.17 72.48 0.52 2.55 16 20 O -0.38 -11.16 11.35 -148.98 -1.69 -12.85 16 21 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.07 1.21 8.14 -2.39 -0.02 1.20 16 24 H 0.11 2.41 7.87 -2.39 -0.02 2.39 16 25 H 0.07 2.37 6.88 -2.39 -0.02 2.35 16 26 H 0.09 2.56 7.64 -2.38 -0.02 2.54 16 27 H 0.07 2.61 4.31 -2.39 -0.01 2.59 16 28 H 0.08 2.36 7.28 -2.39 -0.02 2.35 16 29 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 31 H 0.04 1.44 7.86 -2.39 -0.02 1.42 16 Total: -1.00 -74.23 251.89 3.73 -70.50 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.04 Total: 14.12 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 4.23 Total: 0.17 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -1.48 Total: -79.29 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -1.74 Total: -47.68 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.68 Total: 42.19 kcal Total: -74.23 3.73 -70.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162081183.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.485 kcal (2) G-P(sol) polarization free energy of solvation -74.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds