Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.27395 * 2 1 4 4 C 1.54951 * 110.39062 * 237.85426 * 2 1 3 5 5 C 1.55308 * 100.93973 * 204.59474 * 4 2 1 6 6 H 1.09002 * 110.84880 * 275.94337 * 5 4 2 7 7 C 1.50707 * 111.02097 * 152.40352 * 5 4 2 8 8 O 1.21283 * 119.99572 * 2.89017 * 7 5 4 9 9 N 1.34772 * 120.00015 * 182.89557 * 7 5 4 10 10 C 1.46500 * 120.00000 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46835 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00473 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99641 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99809 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46714 * 120.00215 * 15 13 11 18 18 H 1.48499 * 109.47185 * 240.00021 * 15 13 11 19 19 C 1.54382 * 102.25520 * 34.13392 * 5 4 2 20 20 O 1.43244 * 107.58548 * 338.64457 * 19 5 4 21 21 H 1.09003 * 109.47147 * 299.36226 * 1 2 3 22 22 H 1.08995 * 109.47380 * 59.36091 * 1 2 3 23 23 H 1.08997 * 109.47054 * 179.36856 * 1 2 3 24 24 H 1.09000 * 111.12385 * 86.68010 * 4 2 1 25 25 H 1.08991 * 111.12330 * 322.51123 * 4 2 1 26 26 H 0.97009 * 120.00063 * 0.02562 * 9 7 5 27 27 H 1.08996 * 109.47096 * 299.99959 * 10 9 7 28 28 H 1.08993 * 109.47236 * 59.99916 * 10 9 7 29 29 H 0.97007 * 120.00086 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.83275 * 98.15078 * 19 5 4 31 31 H 1.08996 * 109.82975 * 219.13056 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0698 -0.7728 -1.2298 5 6 3.4722 -1.2001 -0.7170 6 1 4.1987 -0.4007 -0.8627 7 6 3.9309 -2.4678 -1.3905 8 8 3.2461 -2.9792 -2.2511 9 7 5.1019 -3.0333 -1.0365 10 6 5.5476 -4.2659 -1.6909 11 6 6.8766 -4.6863 -1.1183 12 1 7.3426 -4.0948 -0.3441 13 6 7.4973 -5.8268 -1.5821 14 7 6.9297 -6.5474 -2.5245 15 14 9.1452 -6.3476 -0.8729 16 1 9.5667 -5.3741 0.1662 17 1 9.0181 -7.6963 -0.2645 18 1 10.1602 -6.3868 -1.9561 19 6 3.2126 -1.4394 0.7859 20 8 2.0286 -0.7157 1.1412 21 1 -0.3633 0.5039 0.8957 22 1 -0.3634 0.5237 -0.8841 23 1 -0.3633 -1.0276 -0.0113 24 1 2.1515 -0.1202 -2.0990 25 1 1.4505 -1.6421 -1.4502 26 1 5.6494 -2.6245 -0.3478 27 1 4.8131 -5.0532 -1.5214 28 1 5.6525 -4.0914 -2.7616 29 1 7.3666 -7.3496 -2.8511 30 1 3.0650 -2.5034 0.9709 31 1 4.0579 -1.0751 1.3697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000162083605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = -101.018100 kcal Electronic energy + Delta-G solvation = -14123.629827 eV Core-core repulsion = 11597.384672 eV Total energy + Delta-G solvation = -2526.245156 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.01224 -38.09796 -34.27036 -32.50674 -32.26274 -31.55304 -27.40461 -25.94720 -23.59845 -21.83112 -21.15984 -19.49122 -17.33673 -16.86825 -15.87245 -15.41554 -15.06888 -14.58610 -14.34220 -13.88586 -13.56097 -13.02775 -12.56793 -12.35717 -12.00135 -11.91928 -11.73171 -11.17962 -11.04936 -10.95963 -10.88750 -10.81651 -10.34128 -9.56296 -9.40809 -9.08485 -8.77627 -7.94990 -6.19547 -4.26699 3.21791 3.23061 3.29123 3.32136 3.71286 4.03832 4.33896 4.43885 4.83496 4.99699 5.10913 5.16065 5.17160 5.28219 5.49355 5.63305 5.72721 5.75757 5.88838 5.98111 6.06947 6.26335 6.99063 7.25878 7.36591 7.47183 7.62535 7.93267 8.55814 8.73332 9.02069 9.40054 10.90722 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068979 B = 0.005864 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.822549 B = 4773.627936 C = 5034.746258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.074 3.926 3 H 0.070 0.930 4 C -0.130 4.130 5 C -0.149 4.149 6 H 0.105 0.895 7 C 0.508 3.492 8 O -0.551 6.551 9 N -0.710 5.710 10 C 0.248 3.752 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.064 3.936 14 N -0.885 5.885 15 Si 0.904 3.096 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.065 3.935 20 O -0.380 6.380 21 H 0.061 0.939 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.084 0.916 25 H 0.093 0.907 26 H 0.391 0.609 27 H 0.028 0.972 28 H 0.027 0.973 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.996 12.397 5.390 15.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.017 3.983 3 H 0.088 0.912 4 C -0.168 4.168 5 C -0.171 4.171 6 H 0.123 0.877 7 C 0.292 3.708 8 O -0.430 6.430 9 N -0.357 5.357 10 C 0.127 3.873 11 C -0.582 4.582 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.523 5.523 15 Si 0.731 3.269 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.208 1.208 19 C -0.012 4.012 20 O -0.300 6.300 21 H 0.080 0.920 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.112 0.888 26 H 0.224 0.776 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.530 11.824 4.850 14.833 hybrid contribution 1.422 -0.196 0.391 1.488 sum -6.108 11.628 5.240 14.141 Atomic orbital electron populations 1.21874 0.93714 1.03025 1.02145 1.23003 0.94972 0.95392 0.84970 0.91240 1.23187 0.94461 1.01358 0.97766 1.22928 0.99566 0.98192 0.96388 0.87674 1.20031 0.82094 0.85214 0.83440 1.90661 1.55206 1.64311 1.32871 1.46494 1.20220 1.28471 1.40554 1.19142 0.94666 0.80101 0.93360 1.21259 1.04503 1.10039 1.22400 0.91801 1.24958 0.98225 0.96000 0.94822 1.69984 1.38780 1.16006 1.27504 0.86352 0.82997 0.78590 0.78926 1.19606 1.20764 1.20776 1.23046 0.88061 0.97474 0.92644 1.88396 1.42542 1.64999 1.34079 0.92020 0.91227 0.91743 0.89711 0.88805 0.77632 0.95448 0.95465 0.92463 0.90611 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.62 37.16 0.36 -1.15 16 2 C 0.07 0.87 4.07 -25.70 -0.10 0.76 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.73 5.68 -24.48 -0.14 -1.87 16 5 C -0.15 -2.15 3.38 -89.82 -0.30 -2.45 16 6 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 7 C 0.51 10.04 7.01 -10.98 -0.08 9.96 16 8 O -0.55 -13.17 15.75 5.56 0.09 -13.09 16 9 N -0.71 -14.75 5.53 -61.47 -0.34 -15.09 16 10 C 0.25 6.54 5.43 -5.19 -0.03 6.51 16 11 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 12 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 15 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.06 0.88 7.38 37.88 0.28 1.16 16 20 O -0.38 -5.37 11.04 -35.23 -0.39 -5.76 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 25 H 0.09 1.44 7.35 -51.93 -0.38 1.06 16 26 H 0.39 6.93 8.32 -40.82 -0.34 6.59 16 27 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.08 1.13 7.81 -51.93 -0.41 0.73 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 266.43 15.07 4.02 4.02 Total: -1.00 -31.71 266.43 -5.81 -37.52 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -4.47 Total: 2.35 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -0.43 Total: -0.39 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.40 Total: -40.36 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.30 Total: -18.85 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -31.71 -5.81 -37.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162083605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.500 kcal (2) G-P(sol) polarization free energy of solvation -31.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds