Wall clock time and date at job start Sun Mar 29 2020 21:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 110.27395 * 2 1 4 4 C 1.54951 * 110.39062 * 237.85426 * 2 1 3 5 5 C 1.55308 * 100.93973 * 204.59474 * 4 2 1 6 6 H 1.09002 * 110.84880 * 275.94337 * 5 4 2 7 7 C 1.50707 * 111.02097 * 152.40352 * 5 4 2 8 8 O 1.21283 * 119.99572 * 2.89017 * 7 5 4 9 9 N 1.34772 * 120.00015 * 182.89557 * 7 5 4 10 10 C 1.46500 * 120.00000 * 179.97438 * 9 7 5 11 11 C 1.50699 * 109.46835 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00473 * 0.02562 * 11 10 9 13 13 C 1.37885 * 119.99641 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99833 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99809 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47007 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46714 * 120.00215 * 15 13 11 18 18 H 1.48499 * 109.47185 * 240.00021 * 15 13 11 19 19 C 1.54382 * 102.25520 * 34.13392 * 5 4 2 20 20 O 1.43244 * 107.58548 * 338.64457 * 19 5 4 21 21 H 1.09003 * 109.47147 * 299.36226 * 1 2 3 22 22 H 1.08995 * 109.47380 * 59.36091 * 1 2 3 23 23 H 1.08997 * 109.47054 * 179.36856 * 1 2 3 24 24 H 1.09000 * 111.12385 * 86.68010 * 4 2 1 25 25 H 1.08991 * 111.12330 * 322.51123 * 4 2 1 26 26 H 0.97009 * 120.00063 * 0.02562 * 9 7 5 27 27 H 1.08996 * 109.47096 * 299.99959 * 10 9 7 28 28 H 1.08993 * 109.47236 * 59.99916 * 10 9 7 29 29 H 0.97007 * 120.00086 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.83275 * 98.15078 * 19 5 4 31 31 H 1.08996 * 109.82975 * 219.13056 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0698 -0.7728 -1.2298 5 6 3.4722 -1.2001 -0.7170 6 1 4.1987 -0.4007 -0.8627 7 6 3.9309 -2.4678 -1.3905 8 8 3.2461 -2.9792 -2.2511 9 7 5.1019 -3.0333 -1.0365 10 6 5.5476 -4.2659 -1.6909 11 6 6.8766 -4.6863 -1.1183 12 1 7.3426 -4.0948 -0.3441 13 6 7.4973 -5.8268 -1.5821 14 7 6.9297 -6.5474 -2.5245 15 14 9.1452 -6.3476 -0.8729 16 1 9.5667 -5.3741 0.1662 17 1 9.0181 -7.6963 -0.2645 18 1 10.1602 -6.3868 -1.9561 19 6 3.2126 -1.4394 0.7859 20 8 2.0286 -0.7157 1.1412 21 1 -0.3633 0.5039 0.8957 22 1 -0.3634 0.5237 -0.8841 23 1 -0.3633 -1.0276 -0.0113 24 1 2.1515 -0.1202 -2.0990 25 1 1.4505 -1.6421 -1.4502 26 1 5.6494 -2.6245 -0.3478 27 1 4.8131 -5.0532 -1.5214 28 1 5.6525 -4.0914 -2.7616 29 1 7.3666 -7.3496 -2.8511 30 1 3.0650 -2.5034 0.9709 31 1 4.0579 -1.0751 1.3697 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162083605.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:59 Heat of formation + Delta-G solvation = -124.791241 kcal Electronic energy + Delta-G solvation = -14124.660708 eV Core-core repulsion = 11597.384672 eV Total energy + Delta-G solvation = -2527.276037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.32814 -39.54274 -36.21207 -34.44106 -33.36985 -32.70094 -29.35206 -26.99220 -25.33060 -23.48961 -22.13433 -21.13716 -18.94847 -18.11535 -17.51814 -17.10316 -16.53465 -16.02219 -15.93569 -15.27906 -14.78350 -14.50416 -14.09271 -13.95364 -13.38641 -13.32728 -12.97618 -12.78700 -12.75447 -12.26140 -12.20243 -12.05811 -11.81054 -11.47076 -10.87987 -10.83521 -10.46525 -9.89358 -8.30775 -6.47491 1.43333 1.44224 1.57830 1.63511 2.27506 2.47449 2.83341 3.04589 3.30501 3.77715 3.88078 4.01674 4.19249 4.24955 4.48328 4.67224 4.69987 4.82604 4.90035 5.01041 5.09167 5.18202 5.20910 5.31971 5.45325 5.64711 5.82377 6.00350 6.63257 6.83037 7.21292 7.41242 8.81746 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.068979 B = 0.005864 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 405.822549 B = 4773.627936 C = 5034.746258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.098 0.902 4 C -0.132 4.132 5 C -0.137 4.137 6 H 0.142 0.858 7 C 0.505 3.495 8 O -0.599 6.599 9 N -0.703 5.703 10 C 0.264 3.736 11 C -0.555 4.555 12 H 0.085 0.915 13 C 0.004 3.996 14 N -0.932 5.932 15 Si 0.985 3.015 16 H -0.252 1.252 17 H -0.280 1.280 18 H -0.279 1.279 19 C 0.068 3.932 20 O -0.395 6.395 21 H 0.071 0.929 22 H 0.089 0.911 23 H 0.047 0.953 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.410 0.590 27 H -0.013 1.013 28 H -0.011 1.011 29 H 0.269 0.731 30 H 0.053 0.947 31 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.874 14.433 7.000 17.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.018 3.982 3 H 0.116 0.884 4 C -0.170 4.170 5 C -0.158 4.158 6 H 0.160 0.840 7 C 0.292 3.708 8 O -0.481 6.481 9 N -0.352 5.352 10 C 0.141 3.859 11 C -0.593 4.593 12 H 0.103 0.897 13 C -0.196 4.196 14 N -0.570 5.570 15 Si 0.809 3.191 16 H -0.175 1.175 17 H -0.205 1.205 18 H -0.204 1.204 19 C -0.009 4.009 20 O -0.315 6.315 21 H 0.090 0.910 22 H 0.108 0.892 23 H 0.066 0.934 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.245 0.755 27 H 0.005 0.995 28 H 0.007 0.993 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -6.413 13.907 6.495 16.635 hybrid contribution 0.978 -0.816 -0.153 1.283 sum -5.435 13.091 6.342 15.529 Atomic orbital electron populations 1.21910 0.92706 1.02486 1.03660 1.23208 0.95896 0.96005 0.83067 0.88394 1.23226 0.93347 1.00919 0.99506 1.22937 1.00879 0.95573 0.96438 0.84008 1.21016 0.80831 0.86342 0.82578 1.90640 1.56325 1.66010 1.35093 1.46221 1.21164 1.27044 1.40818 1.18584 0.94145 0.81368 0.91800 1.21649 1.04457 1.10477 1.22737 0.89666 1.26072 1.02616 0.95941 0.94948 1.70143 1.40976 1.16703 1.29217 0.85099 0.77323 0.78325 0.78398 1.17535 1.20540 1.20437 1.23045 0.89074 0.96625 0.92164 1.88389 1.42731 1.65312 1.35096 0.91013 0.89202 0.93369 0.87891 0.91721 0.75453 0.99514 0.99287 0.92232 0.92851 0.87629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 9.62 71.98 0.69 -2.01 16 2 C 0.07 1.55 4.07 31.26 0.13 1.68 16 3 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.13 -3.32 5.68 32.05 0.18 -3.13 16 5 C -0.14 -3.67 3.38 -10.28 -0.03 -3.71 16 6 H 0.14 2.85 8.14 -2.39 -0.02 2.83 16 7 C 0.51 20.09 7.01 87.66 0.61 20.71 16 8 O -0.60 -29.77 15.75 -3.04 -0.05 -29.81 16 9 N -0.70 -29.36 5.53 -466.80 -2.58 -31.94 16 10 C 0.26 14.46 5.43 85.63 0.46 14.92 16 11 C -0.56 -29.99 9.28 25.60 0.24 -29.76 16 12 H 0.09 4.14 7.60 -2.91 -0.02 4.12 16 13 C 0.00 0.21 5.46 84.66 0.46 0.67 16 14 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 15 Si 0.99 42.03 29.54 68.60 2.03 44.05 16 16 H -0.25 -9.88 7.11 99.48 0.71 -9.17 16 17 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.28 -11.68 7.11 99.48 0.71 -10.98 16 19 C 0.07 1.71 7.38 72.45 0.53 2.24 16 20 O -0.40 -10.24 11.04 -148.98 -1.64 -11.89 16 21 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 22 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.06 2.01 7.35 -2.39 -0.02 2.00 16 26 H 0.41 13.91 8.32 -92.70 -0.77 13.14 16 27 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 28 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 29 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.05 1.57 7.81 -2.39 -0.02 1.55 16 31 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.23 266.43 1.66 -69.57 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.35 Total: 14.27 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 3.28 Total: 1.62 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -2.30 Total: -87.81 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.69 Total: -41.70 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -71.23 1.66 -69.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162083605.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.226 kcal (2) G-P(sol) polarization free energy of solvation -71.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds