Wall clock time and date at job start Sun Mar 29 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 112.90846 * 2 1 4 4 C 1.53780 * 113.61177 * 131.24849 * 2 1 3 5 5 H 1.08999 * 113.69505 * 254.54143 * 4 2 1 6 6 O 1.42903 * 113.61641 * 25.43562 * 4 2 1 7 7 C 1.53779 * 87.07964 * 139.97998 * 4 2 1 8 8 C 1.53780 * 113.61273 * 228.74564 * 2 1 3 9 9 H 1.09004 * 113.61398 * 334.56998 * 8 2 1 10 10 N 1.46899 * 113.68809 * 105.46220 * 8 2 1 11 11 C 1.46901 * 110.99740 * 202.03889 * 10 8 2 12 12 C 1.53001 * 109.47110 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47056 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00265 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00282 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46694 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47273 * 119.99877 * 17 15 13 20 20 H 1.48500 * 109.47057 * 239.99930 * 17 15 13 21 21 H 1.08998 * 109.46533 * 308.25631 * 1 2 3 22 22 H 1.08999 * 109.47025 * 68.25372 * 1 2 3 23 23 H 1.08996 * 109.47296 * 188.25510 * 1 2 3 24 24 H 1.09005 * 109.46953 * 171.74856 * 3 2 1 25 25 H 1.08997 * 109.47225 * 291.74557 * 3 2 1 26 26 H 1.09000 * 109.47604 * 51.74538 * 3 2 1 27 27 H 0.96700 * 114.00311 * 177.00115 * 6 4 2 28 28 H 1.09001 * 113.61857 * 89.11999 * 7 4 2 29 29 H 1.09003 * 113.61484 * 219.93470 * 7 4 2 30 30 H 1.00897 * 111.00229 * 78.09081 * 10 8 2 31 31 H 1.09003 * 109.47058 * 300.00265 * 11 10 8 32 32 H 1.09002 * 109.47205 * 60.00280 * 11 10 8 33 33 H 1.09004 * 109.46956 * 299.99599 * 12 11 10 34 34 H 1.09002 * 109.46938 * 60.00019 * 12 11 10 35 35 H 0.97006 * 120.00284 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 1.0594 5 1 2.5652 -0.4001 1.9153 6 8 1.2919 -2.0100 1.4391 7 6 3.1923 -1.3136 0.0001 8 6 2.1460 -0.9291 -1.0593 9 1 1.4945 -1.7536 -1.3489 10 7 2.7110 -0.2163 -2.2128 11 6 2.8006 -1.0981 -3.3843 12 6 3.3928 -0.3223 -4.5625 13 6 3.4852 -1.2271 -5.7641 14 1 3.1542 -2.2528 -5.6945 15 6 3.9913 -0.7452 -6.9527 16 7 4.3929 0.5042 -7.0379 17 14 4.1053 -1.8665 -8.4424 18 1 3.5907 -3.2137 -8.0882 19 1 3.2928 -1.3023 -9.5500 20 1 5.5222 -1.9747 -8.8733 21 1 -0.3632 0.6363 0.8070 22 1 -0.3633 0.3807 -0.9545 23 1 -0.3634 -1.0170 0.1475 24 1 3.2039 1.3480 0.1475 25 1 1.9163 1.8922 -0.9545 26 1 1.6810 1.9917 0.8070 27 1 1.6911 -2.6235 2.0709 28 1 4.0711 -0.6688 0.0000 29 1 3.4454 -2.3739 0.0011 30 1 3.6118 0.1787 -1.9880 31 1 3.4413 -1.9485 -3.1508 32 1 1.8048 -1.4549 -3.6475 33 1 2.7524 0.5283 -4.7962 34 1 4.3886 0.0342 -4.2991 35 1 4.7494 0.8433 -7.8740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163629686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:12 Heat of formation + Delta-G solvation = -44.664267 kcal Electronic energy + Delta-G solvation = -14482.211061 eV Core-core repulsion = 12094.242685 eV Total energy + Delta-G solvation = -2387.968376 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.12630 -35.78073 -34.25732 -32.47835 -30.29025 -28.61344 -27.19676 -24.56112 -22.76410 -22.33075 -20.55534 -18.30844 -17.08872 -16.27116 -15.21145 -14.96432 -14.60013 -14.35355 -14.18519 -13.33010 -12.73065 -12.58061 -12.26350 -12.08811 -11.93376 -11.90108 -11.52481 -11.19071 -10.93004 -10.83138 -10.72163 -10.45472 -9.99130 -9.87746 -9.73726 -9.21960 -9.06267 -8.33765 -7.68278 -5.98163 -4.00418 3.32301 3.39580 3.43917 3.99362 4.44815 4.58903 4.70209 4.77527 4.97073 5.30692 5.37923 5.42545 5.49426 5.65619 5.76632 5.87018 5.95553 6.06128 6.13496 6.21660 6.34643 6.38439 6.48673 6.58545 6.64318 7.01894 7.55012 7.58931 7.77150 7.86570 8.00927 8.12083 8.46506 9.07189 9.63338 11.13348 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055040 B = 0.005660 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.602341 B = 4945.441878 C = 5114.583226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.067 4.067 3 C -0.120 4.120 4 C 0.083 3.917 5 H 0.063 0.937 6 O -0.548 6.548 7 C -0.203 4.203 8 C 0.085 3.915 9 H 0.095 0.905 10 N -0.678 5.678 11 C 0.066 3.934 12 C 0.025 3.975 13 C -0.520 4.520 14 H 0.054 0.946 15 C 0.057 3.943 16 N -0.894 5.894 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.375 0.625 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.336 0.664 31 H 0.014 0.986 32 H 0.057 0.943 33 H 0.025 0.975 34 H 0.013 0.987 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.552 -1.746 16.454 16.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.068 4.068 3 C -0.177 4.177 4 C 0.024 3.976 5 H 0.081 0.919 6 O -0.353 6.353 7 C -0.243 4.243 8 C -0.026 4.026 9 H 0.113 0.887 10 N -0.306 5.306 11 C -0.062 4.062 12 C -0.013 4.013 13 C -0.559 4.559 14 H 0.073 0.927 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.222 0.778 28 H 0.105 0.895 29 H 0.086 0.914 30 H 0.155 0.845 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.043 0.957 34 H 0.031 0.969 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.494 -1.044 15.690 16.355 hybrid contribution 1.370 -1.468 -0.235 2.022 sum -3.124 -2.512 15.456 15.967 Atomic orbital electron populations 1.21528 0.93867 1.01945 1.01170 1.22098 0.96175 0.94708 0.93840 1.21437 0.99739 0.93891 1.02660 1.22784 0.91194 0.88703 0.94949 0.91923 1.86464 1.42870 1.39719 1.66203 1.24363 0.98421 1.01945 0.99556 1.23003 0.95613 0.95106 0.88887 0.88686 1.60453 1.30240 1.35537 1.04410 1.22167 0.99634 0.93922 0.90459 1.19077 0.95756 0.95753 0.90697 1.21230 1.41494 0.97461 0.95714 0.92745 1.25004 0.95502 0.95052 0.98830 1.69985 1.42766 1.14295 1.26283 0.86538 0.77628 0.80925 0.82918 1.19782 1.20967 1.21046 0.93426 0.92366 0.91931 0.92966 0.90275 0.93256 0.77840 0.89457 0.91386 0.84516 0.96784 0.92443 0.95665 0.96901 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.99 37.16 0.33 -1.36 16 2 C -0.07 -0.89 1.35 -153.70 -0.21 -1.10 16 3 C -0.12 -1.48 8.31 37.15 0.31 -1.18 16 4 C 0.08 0.97 4.71 -25.92 -0.12 0.85 16 5 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 6 O -0.55 -6.20 12.17 -35.23 -0.43 -6.63 16 7 C -0.20 -2.59 7.19 -25.92 -0.19 -2.78 16 8 C 0.09 1.31 3.54 -66.90 -0.24 1.07 16 9 H 0.10 1.59 7.85 -51.93 -0.41 1.18 16 10 N -0.68 -12.23 5.66 -105.86 -0.60 -12.83 16 11 C 0.07 1.43 5.49 -3.82 -0.02 1.41 16 12 C 0.02 0.65 5.23 -27.88 -0.15 0.51 16 13 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 14 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -27.23 13.29 55.43 0.74 -26.50 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.06 0.86 7.07 -51.93 -0.37 0.50 16 24 H 0.05 0.60 7.32 -51.93 -0.38 0.22 16 25 H 0.08 1.11 7.89 -51.93 -0.41 0.70 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.37 2.57 9.12 45.56 0.42 2.98 16 28 H 0.09 1.06 7.32 -51.93 -0.38 0.68 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.34 5.84 8.06 -39.29 -0.32 5.52 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.02 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 285.23 15.07 4.30 4.30 Total: -1.00 -31.11 285.23 -6.89 -38.00 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -5.19 Total: 3.09 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -0.69 Total: -16.34 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.14 Total: -39.33 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.43 Total: -6.63 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.11 -6.89 -38.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163629686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.666 kcal (2) G-P(sol) polarization free energy of solvation -31.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds