Wall clock time and date at job start Sun Mar 29 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 112.90846 * 2 1 4 4 C 1.53780 * 113.61177 * 131.24849 * 2 1 3 5 5 H 1.08999 * 113.69505 * 254.54143 * 4 2 1 6 6 O 1.42903 * 113.61641 * 25.43562 * 4 2 1 7 7 C 1.53779 * 87.07964 * 139.97998 * 4 2 1 8 8 C 1.53780 * 113.61273 * 228.74564 * 2 1 3 9 9 H 1.09004 * 113.61398 * 334.56998 * 8 2 1 10 10 N 1.46899 * 113.68809 * 105.46220 * 8 2 1 11 11 C 1.46901 * 110.99740 * 202.03889 * 10 8 2 12 12 C 1.53001 * 109.47110 * 180.02562 * 11 10 8 13 13 C 1.50698 * 109.47056 * 179.97438 * 12 11 10 14 14 H 1.08002 * 120.00265 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00028 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99832 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00282 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46694 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47273 * 119.99877 * 17 15 13 20 20 H 1.48500 * 109.47057 * 239.99930 * 17 15 13 21 21 H 1.08998 * 109.46533 * 308.25631 * 1 2 3 22 22 H 1.08999 * 109.47025 * 68.25372 * 1 2 3 23 23 H 1.08996 * 109.47296 * 188.25510 * 1 2 3 24 24 H 1.09005 * 109.46953 * 171.74856 * 3 2 1 25 25 H 1.08997 * 109.47225 * 291.74557 * 3 2 1 26 26 H 1.09000 * 109.47604 * 51.74538 * 3 2 1 27 27 H 0.96700 * 114.00311 * 177.00115 * 6 4 2 28 28 H 1.09001 * 113.61857 * 89.11999 * 7 4 2 29 29 H 1.09003 * 113.61484 * 219.93470 * 7 4 2 30 30 H 1.00897 * 111.00229 * 78.09081 * 10 8 2 31 31 H 1.09003 * 109.47058 * 300.00265 * 11 10 8 32 32 H 1.09002 * 109.47205 * 60.00280 * 11 10 8 33 33 H 1.09004 * 109.46956 * 299.99599 * 12 11 10 34 34 H 1.09002 * 109.46938 * 60.00019 * 12 11 10 35 35 H 0.97006 * 120.00284 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1256 1.4093 0.0000 4 6 2.1460 -0.9290 1.0594 5 1 2.5652 -0.4001 1.9153 6 8 1.2919 -2.0100 1.4391 7 6 3.1923 -1.3136 0.0001 8 6 2.1460 -0.9291 -1.0593 9 1 1.4945 -1.7536 -1.3489 10 7 2.7110 -0.2163 -2.2128 11 6 2.8006 -1.0981 -3.3843 12 6 3.3928 -0.3223 -4.5625 13 6 3.4852 -1.2271 -5.7641 14 1 3.1542 -2.2528 -5.6945 15 6 3.9913 -0.7452 -6.9527 16 7 4.3929 0.5042 -7.0379 17 14 4.1053 -1.8665 -8.4424 18 1 3.5907 -3.2137 -8.0882 19 1 3.2928 -1.3023 -9.5500 20 1 5.5222 -1.9747 -8.8733 21 1 -0.3632 0.6363 0.8070 22 1 -0.3633 0.3807 -0.9545 23 1 -0.3634 -1.0170 0.1475 24 1 3.2039 1.3480 0.1475 25 1 1.9163 1.8922 -0.9545 26 1 1.6810 1.9917 0.8070 27 1 1.6911 -2.6235 2.0709 28 1 4.0711 -0.6688 0.0000 29 1 3.4454 -2.3739 0.0011 30 1 3.6118 0.1787 -1.9880 31 1 3.4413 -1.9485 -3.1508 32 1 1.8048 -1.4549 -3.6475 33 1 2.7524 0.5283 -4.7962 34 1 4.3886 0.0342 -4.2991 35 1 4.7494 0.8433 -7.8740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163629686.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:12 Heat of formation + Delta-G solvation = -67.446700 kcal Electronic energy + Delta-G solvation = -14483.198981 eV Core-core repulsion = 12094.242685 eV Total energy + Delta-G solvation = -2388.956296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.19239 -37.05319 -35.77604 -34.39963 -31.56890 -30.34204 -28.21565 -26.43344 -24.04661 -23.45919 -22.46129 -19.38239 -18.55820 -17.97760 -16.59734 -16.33934 -16.06844 -15.73193 -15.65934 -14.49970 -14.36512 -14.24116 -13.57376 -13.34178 -13.15803 -13.02181 -12.91773 -12.84913 -12.60017 -12.46498 -12.19999 -11.87238 -11.67344 -11.36032 -11.30299 -10.85764 -10.57826 -10.48882 -9.13654 -8.21484 -6.33028 1.39335 1.40140 1.53441 2.39786 3.11831 3.13004 3.34044 3.60824 3.76424 3.89410 4.14508 4.37793 4.51258 4.54223 4.60861 4.64066 4.80174 4.87618 4.92642 5.04095 5.05432 5.08197 5.18954 5.30977 5.43600 5.51157 5.60310 5.68177 5.79334 6.16373 6.31290 6.59493 6.84305 6.94808 7.36311 8.90877 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.055040 B = 0.005660 C = 0.005473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.602341 B = 4945.441878 C = 5114.583226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 C -0.117 4.117 4 C 0.100 3.900 5 H 0.090 0.910 6 O -0.563 6.563 7 C -0.195 4.195 8 C 0.070 3.930 9 H 0.077 0.923 10 N -0.680 5.680 11 C 0.086 3.914 12 C 0.033 3.967 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.276 1.276 21 H 0.063 0.937 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.395 0.605 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.340 0.660 31 H 0.015 0.985 32 H 0.050 0.950 33 H -0.006 1.006 34 H -0.007 1.007 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.389 -2.607 17.557 18.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 C -0.174 4.174 4 C 0.040 3.960 5 H 0.107 0.893 6 O -0.371 6.371 7 C -0.235 4.235 8 C -0.041 4.041 9 H 0.095 0.905 10 N -0.309 5.309 11 C -0.043 4.043 12 C -0.005 4.005 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.197 4.197 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.187 1.187 19 H -0.203 1.203 20 H -0.201 1.201 21 H 0.082 0.918 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.246 0.754 28 H 0.114 0.886 29 H 0.088 0.912 30 H 0.159 0.841 31 H 0.034 0.966 32 H 0.068 0.932 33 H 0.012 0.988 34 H 0.011 0.989 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.334 -1.920 16.831 17.485 hybrid contribution 1.292 -1.183 -0.538 1.833 sum -3.042 -3.104 16.292 16.862 Atomic orbital electron populations 1.21493 0.94081 1.01726 1.00941 1.22151 0.96088 0.95242 0.93644 1.21403 1.00462 0.93334 1.02212 1.22620 0.89954 0.88375 0.95068 0.89278 1.86422 1.43378 1.40197 1.67067 1.24313 0.98319 1.02272 0.98575 1.23134 0.96861 0.95492 0.88616 0.90450 1.60379 1.30604 1.35342 1.04607 1.21752 0.98590 0.93585 0.90335 1.18916 0.94224 0.94960 0.92358 1.21642 1.41848 0.97970 0.96944 0.92412 1.25972 0.94788 0.96660 1.02243 1.70111 1.43343 1.16238 1.27437 0.85366 0.77999 0.78954 0.78507 1.18737 1.20278 1.20113 0.91773 0.93926 0.92657 0.92061 0.92520 0.91252 0.75430 0.88594 0.91200 0.84076 0.96636 0.93162 0.98778 0.98864 0.92686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.99 71.98 0.65 -2.55 16 2 C -0.07 -1.75 1.35 -51.66 -0.07 -1.82 16 3 C -0.12 -2.69 8.31 71.98 0.60 -2.09 16 4 C 0.10 2.03 4.71 31.12 0.15 2.17 16 5 H 0.09 1.42 8.10 -2.39 -0.02 1.41 16 6 O -0.56 -11.23 12.17 -148.98 -1.81 -13.05 16 7 C -0.20 -4.58 7.19 31.12 0.22 -4.35 16 8 C 0.07 2.09 3.54 45.44 0.16 2.25 16 9 H 0.08 2.60 7.85 -2.39 -0.02 2.58 16 10 N -0.68 -24.79 5.66 -488.84 -2.76 -27.55 16 11 C 0.09 3.81 5.49 86.30 0.47 4.28 16 12 C 0.03 1.80 5.23 29.85 0.16 1.96 16 13 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 14 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 15 C 0.00 0.08 5.46 84.66 0.46 0.54 16 16 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 17 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 19 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 23 H 0.05 1.48 7.07 -2.39 -0.02 1.46 16 24 H 0.06 1.29 7.32 -2.38 -0.02 1.27 16 25 H 0.06 1.56 7.89 -2.39 -0.02 1.54 16 26 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.40 4.19 9.12 -74.06 -0.68 3.51 16 28 H 0.10 2.10 7.32 -2.39 -0.02 2.09 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.34 11.85 8.06 -89.70 -0.72 11.13 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 2.26 8.13 -2.39 -0.02 2.24 16 33 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 34 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -66.97 285.23 0.43 -66.54 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -0.33 Total: 15.73 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 3.03 Total: -31.36 kcal Atomic # 7 Polarization: -82.37 SS G_CDS: -2.48 Total: -84.85 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: -1.81 Total: -13.05 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -66.97 0.43 -66.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163629686.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.903 kcal (2) G-P(sol) polarization free energy of solvation -66.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds