Wall clock time and date at job start Sun Mar 29 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 112.90828 * 2 1 4 4 C 1.53787 * 113.61845 * 228.74659 * 2 1 3 5 5 H 1.08997 * 113.61094 * 156.33160 * 4 2 1 6 6 O 1.42901 * 113.68603 * 25.44541 * 4 2 1 7 7 C 1.53775 * 87.08040 * 270.88740 * 4 2 1 8 8 C 1.53779 * 87.08352 * 334.56474 * 7 4 2 9 9 H 1.09007 * 113.61491 * 270.80471 * 8 7 4 10 10 N 1.46898 * 113.61637 * 139.98566 * 8 7 4 11 11 C 1.46904 * 111.00074 * 104.50431 * 10 8 7 12 12 C 1.52998 * 109.46861 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46700 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 H 1.08999 * 109.46773 * 288.74844 * 1 2 3 22 22 H 1.09003 * 109.46901 * 48.74695 * 1 2 3 23 23 H 1.09002 * 109.46946 * 168.74877 * 1 2 3 24 24 H 1.09003 * 109.47346 * 191.24820 * 3 2 1 25 25 H 1.08999 * 109.47222 * 311.25290 * 3 2 1 26 26 H 1.09002 * 109.47510 * 71.25223 * 3 2 1 27 27 H 0.96697 * 113.99824 * 182.95477 * 6 4 2 28 28 H 1.09008 * 113.61109 * 220.01622 * 7 4 2 29 29 H 1.08995 * 113.61851 * 89.11468 * 7 4 2 30 30 H 1.00901 * 110.99793 * 228.45991 * 10 8 7 31 31 H 1.09004 * 109.47048 * 60.00131 * 11 10 8 32 32 H 1.08997 * 109.46845 * 300.00295 * 11 10 8 33 33 H 1.09004 * 109.47139 * 60.00240 * 12 11 10 34 34 H 1.08997 * 109.47675 * 299.99840 * 12 11 10 35 35 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 1 3.1591 -0.6498 -1.3489 6 8 1.2934 -1.1654 -2.1814 7 6 2.0929 -2.0425 0.0000 8 6 2.1460 -0.9291 1.0594 9 1 3.1590 -0.6508 1.3501 10 7 1.2679 -1.1711 2.2119 11 6 2.0436 -1.5975 3.3843 12 6 1.0970 -1.8387 4.5619 13 6 1.8928 -2.2768 5.7643 14 1 2.9663 -2.3731 5.6958 15 6 1.2503 -2.5547 6.9522 16 7 1.9447 -2.9365 8.0018 17 14 -0.6066 -2.3888 7.0708 18 1 -1.2430 -3.6816 6.7115 19 1 -1.0699 -1.3322 6.1358 20 1 -0.9831 -2.0208 8.4594 21 1 -0.3633 0.3303 0.9731 22 1 -0.3633 0.6777 -0.7726 23 1 -0.3633 -1.0079 -0.2005 24 1 3.1954 1.3517 -0.2005 25 1 1.6428 2.0078 -0.7726 26 1 1.9627 1.8726 0.9731 27 1 1.6577 -1.7846 -2.8287 28 1 2.9717 -2.6875 0.0000 29 1 1.1569 -2.6009 0.0000 30 1 0.7141 -0.3543 2.4223 31 1 2.7604 -0.8199 3.6482 32 1 2.5768 -2.5192 3.1515 33 1 0.3800 -2.6162 4.2983 34 1 0.5642 -0.9168 4.7946 35 1 1.4927 -3.1323 8.8374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163629928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:18 Heat of formation + Delta-G solvation = -42.069600 kcal Electronic energy + Delta-G solvation = -14506.185762 eV Core-core repulsion = 12118.329899 eV Total energy + Delta-G solvation = -2387.855862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.13676 -35.90296 -34.37452 -32.43989 -30.52263 -29.25987 -27.39364 -24.58034 -22.81208 -22.06252 -20.40529 -18.14370 -17.51716 -16.73208 -15.35383 -15.07421 -14.96378 -14.17412 -13.75680 -13.55136 -13.12849 -12.68858 -12.54568 -12.24806 -12.09970 -11.96545 -11.62771 -11.31772 -11.07211 -10.82767 -10.51478 -10.34815 -10.08305 -9.79361 -9.76636 -9.47892 -9.21050 -8.52396 -7.91795 -6.03359 -4.01600 3.34043 3.40713 3.45742 4.08189 4.42930 4.47467 4.50440 4.83790 4.90402 5.02740 5.22845 5.31371 5.41331 5.51792 5.67698 5.75223 5.91872 5.98594 6.01892 6.06375 6.19261 6.21046 6.33560 6.47061 6.57056 6.80127 7.17985 7.40606 7.59852 7.64945 7.78129 7.93185 8.54474 9.00746 9.59203 11.10040 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051399 B = 0.006045 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.631080 B = 4631.186199 C = 4733.901935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.077 4.077 3 C -0.139 4.139 4 C 0.082 3.918 5 H 0.076 0.924 6 O -0.556 6.556 7 C -0.155 4.155 8 C 0.069 3.931 9 H 0.069 0.931 10 N -0.677 5.677 11 C 0.073 3.927 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.265 1.265 20 H -0.289 1.289 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.373 0.627 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.337 0.663 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.021 0.979 34 H 0.013 0.987 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.483 5.812 -18.326 19.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.078 4.078 3 C -0.197 4.197 4 C 0.022 3.978 5 H 0.094 0.906 6 O -0.361 6.361 7 C -0.193 4.193 8 C -0.042 4.042 9 H 0.087 0.913 10 N -0.308 5.308 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.710 3.290 18 H -0.202 1.202 19 H -0.190 1.190 20 H -0.215 1.215 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.219 0.781 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.156 0.844 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.031 0.969 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.038 5.548 -17.986 18.851 hybrid contribution 0.028 0.408 0.271 0.491 sum -1.010 5.956 -17.715 18.717 Atomic orbital electron populations 1.21249 0.91872 1.02636 1.00859 1.22250 0.97429 0.93847 0.94271 1.21790 1.00221 0.95640 1.02008 1.23401 0.92818 0.96824 0.84738 0.90608 1.86520 1.47048 1.67838 1.34649 1.23729 1.02979 0.97129 0.95501 1.22807 0.95631 0.95378 0.90402 0.91299 1.60740 1.24874 1.39329 1.05895 1.22003 0.95638 0.98716 0.89187 1.19545 0.95626 0.96628 0.92985 1.21079 0.95524 1.45447 0.93887 0.91158 1.25011 0.98331 0.94490 0.95604 1.69919 1.35868 1.46687 1.01903 0.86730 0.86094 0.79092 0.77059 1.20245 1.18984 1.21510 0.92469 0.92989 0.91572 0.92713 0.92403 0.92231 0.78057 0.91876 0.88479 0.84411 0.96063 0.91829 0.96099 0.96909 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 7.85 37.15 0.29 -1.10 16 2 C -0.08 -0.95 1.26 -153.70 -0.19 -1.14 16 3 C -0.14 -1.50 9.20 37.16 0.34 -1.16 16 4 C 0.08 0.91 4.62 -25.92 -0.12 0.79 16 5 H 0.08 0.74 7.96 -51.93 -0.41 0.32 16 6 O -0.56 -6.08 12.77 -35.23 -0.45 -6.53 16 7 C -0.15 -2.00 7.36 -25.92 -0.19 -2.19 16 8 C 0.07 0.97 3.56 -66.90 -0.24 0.74 16 9 H 0.07 0.98 7.85 -51.93 -0.41 0.58 16 10 N -0.68 -11.54 6.01 -105.86 -0.64 -12.18 16 11 C 0.07 1.49 5.49 -3.82 -0.02 1.47 16 12 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 13 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.25 13.96 55.43 0.77 -27.48 16 17 Si 0.88 22.18 27.47 -169.99 -4.67 17.51 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 20 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 21 H 0.06 0.73 6.79 -51.93 -0.35 0.37 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.07 0.92 7.19 -51.93 -0.37 0.55 16 24 H 0.05 0.54 7.94 -51.93 -0.41 0.13 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.37 2.46 9.12 45.56 0.42 2.88 16 28 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.10 1.39 7.65 -51.93 -0.40 1.00 16 30 H 0.34 5.52 7.09 -39.29 -0.28 5.24 16 31 H 0.02 0.43 8.13 -51.93 -0.42 0.01 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 34 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 35 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 281.23 15.07 4.24 4.24 Total: -1.00 -31.61 281.23 -6.53 -38.14 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -5.11 Total: 2.82 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -0.68 Total: -16.52 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.14 Total: -39.66 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.45 Total: -6.53 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.61 -6.53 -38.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163629928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.929 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds