Wall clock time and date at job start Sun Mar 29 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 112.90828 * 2 1 4 4 C 1.53787 * 113.61845 * 228.74659 * 2 1 3 5 5 H 1.08997 * 113.61094 * 156.33160 * 4 2 1 6 6 O 1.42901 * 113.68603 * 25.44541 * 4 2 1 7 7 C 1.53775 * 87.08040 * 270.88740 * 4 2 1 8 8 C 1.53779 * 87.08352 * 334.56474 * 7 4 2 9 9 H 1.09007 * 113.61491 * 270.80471 * 8 7 4 10 10 N 1.46898 * 113.61637 * 139.98566 * 8 7 4 11 11 C 1.46904 * 111.00074 * 104.50431 * 10 8 7 12 12 C 1.52998 * 109.46861 * 179.97438 * 11 10 8 13 13 C 1.50699 * 109.46700 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00803 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99889 * 180.02562 * 13 12 11 16 16 N 1.31520 * 120.00186 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 120.00030 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47297 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.47261 * 330.00044 * 17 15 13 20 20 H 1.48500 * 109.47454 * 210.00037 * 17 15 13 21 21 H 1.08999 * 109.46773 * 288.74844 * 1 2 3 22 22 H 1.09003 * 109.46901 * 48.74695 * 1 2 3 23 23 H 1.09002 * 109.46946 * 168.74877 * 1 2 3 24 24 H 1.09003 * 109.47346 * 191.24820 * 3 2 1 25 25 H 1.08999 * 109.47222 * 311.25290 * 3 2 1 26 26 H 1.09002 * 109.47510 * 71.25223 * 3 2 1 27 27 H 0.96697 * 113.99824 * 182.95477 * 6 4 2 28 28 H 1.09008 * 113.61109 * 220.01622 * 7 4 2 29 29 H 1.08995 * 113.61851 * 89.11468 * 7 4 2 30 30 H 1.00901 * 110.99793 * 228.45991 * 10 8 7 31 31 H 1.09004 * 109.47048 * 60.00131 * 11 10 8 32 32 H 1.08997 * 109.46845 * 300.00295 * 11 10 8 33 33 H 1.09004 * 109.47139 * 60.00240 * 12 11 10 34 34 H 1.08997 * 109.47675 * 299.99840 * 12 11 10 35 35 H 0.96998 * 120.00124 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1255 1.4093 0.0000 4 6 2.1461 -0.9291 -1.0593 5 1 3.1591 -0.6498 -1.3489 6 8 1.2934 -1.1654 -2.1814 7 6 2.0929 -2.0425 0.0000 8 6 2.1460 -0.9291 1.0594 9 1 3.1590 -0.6508 1.3501 10 7 1.2679 -1.1711 2.2119 11 6 2.0436 -1.5975 3.3843 12 6 1.0970 -1.8387 4.5619 13 6 1.8928 -2.2768 5.7643 14 1 2.9663 -2.3731 5.6958 15 6 1.2503 -2.5547 6.9522 16 7 1.9447 -2.9365 8.0018 17 14 -0.6066 -2.3888 7.0708 18 1 -1.2430 -3.6816 6.7115 19 1 -1.0699 -1.3322 6.1358 20 1 -0.9831 -2.0208 8.4594 21 1 -0.3633 0.3303 0.9731 22 1 -0.3633 0.6777 -0.7726 23 1 -0.3633 -1.0079 -0.2005 24 1 3.1954 1.3517 -0.2005 25 1 1.6428 2.0078 -0.7726 26 1 1.9627 1.8726 0.9731 27 1 1.6577 -1.7846 -2.8287 28 1 2.9717 -2.6875 0.0000 29 1 1.1569 -2.6009 0.0000 30 1 0.7141 -0.3543 2.4223 31 1 2.7604 -0.8199 3.6482 32 1 2.5768 -2.5192 3.1515 33 1 0.3800 -2.6162 4.2983 34 1 0.5642 -0.9168 4.7946 35 1 1.4927 -3.1323 8.8374 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163629928.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:27:18 Heat of formation + Delta-G solvation = -66.017385 kcal Electronic energy + Delta-G solvation = -14507.224216 eV Core-core repulsion = 12118.329899 eV Total energy + Delta-G solvation = -2388.894316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.14074 -37.10540 -35.80403 -34.41741 -31.71070 -30.90382 -28.33765 -26.35450 -23.90216 -23.23798 -22.24805 -19.22904 -18.93458 -18.37560 -16.65916 -16.37273 -16.10655 -15.92334 -15.10096 -14.94715 -14.62104 -14.09575 -13.85532 -13.43241 -13.29366 -13.15105 -12.96204 -12.79163 -12.52172 -12.15136 -11.93738 -11.78259 -11.67011 -11.42590 -11.33075 -11.01536 -10.78049 -10.54248 -9.30417 -8.31162 -6.35754 1.36867 1.37619 1.50546 2.35812 3.04510 3.14549 3.40154 3.46103 3.87540 3.92003 3.96842 4.31035 4.41161 4.47710 4.57451 4.58183 4.77308 4.81565 4.95293 4.98276 5.01000 5.10976 5.15867 5.19382 5.32590 5.45168 5.50990 5.56598 5.63152 6.19754 6.26750 6.52241 6.72922 6.97955 7.29307 8.85594 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.051399 B = 0.006045 C = 0.005913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.631080 B = 4631.186199 C = 4733.901935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.077 4.077 3 C -0.137 4.137 4 C 0.096 3.904 5 H 0.098 0.902 6 O -0.568 6.568 7 C -0.156 4.156 8 C 0.058 3.942 9 H 0.070 0.930 10 N -0.676 5.676 11 C 0.088 3.912 12 C -0.004 4.004 13 C -0.534 4.534 14 H 0.032 0.968 15 C 0.006 3.994 16 N -0.951 5.951 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.247 1.247 20 H -0.283 1.283 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.392 0.608 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.341 0.659 31 H 0.017 0.983 32 H 0.053 0.947 33 H 0.020 0.980 34 H 0.019 0.981 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 6.722 -20.056 21.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.078 4.078 3 C -0.194 4.194 4 C 0.036 3.964 5 H 0.116 0.884 6 O -0.376 6.376 7 C -0.195 4.195 8 C -0.052 4.052 9 H 0.088 0.912 10 N -0.308 5.308 11 C -0.041 4.041 12 C -0.042 4.042 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.191 4.191 16 N -0.592 5.592 17 Si 0.777 3.223 18 H -0.193 1.193 19 H -0.171 1.171 20 H -0.208 1.208 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.242 0.758 28 H 0.087 0.913 29 H 0.099 0.901 30 H 0.161 0.839 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.038 0.962 34 H 0.037 0.963 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.127 6.457 -19.756 20.893 hybrid contribution 0.454 0.093 0.775 0.903 sum -1.673 6.550 -18.981 20.149 Atomic orbital electron populations 1.21205 0.92346 1.01856 1.00929 1.22247 0.97075 0.94685 0.93767 1.21775 1.00932 0.94558 1.02136 1.23283 0.93651 0.95013 0.84421 0.88404 1.86472 1.47618 1.68585 1.34911 1.23709 1.02414 0.97359 0.95996 1.22960 0.95368 0.97206 0.89695 0.91184 1.60662 1.25035 1.39939 1.05190 1.21654 0.94808 0.98312 0.89348 1.19433 0.95680 0.96465 0.92611 1.21415 0.94368 1.45492 0.96011 0.95005 1.25997 1.04041 0.93996 0.95051 1.70065 1.38316 1.48026 1.02747 0.85601 0.79150 0.79846 0.77665 1.19350 1.17056 1.20823 0.92782 0.92180 0.93058 0.91602 0.91495 0.92662 0.75789 0.91279 0.90109 0.83922 0.96507 0.92868 0.96169 0.96256 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.51 7.85 71.98 0.57 -1.95 16 2 C -0.08 -1.72 1.26 -51.65 -0.07 -1.79 16 3 C -0.14 -2.59 9.20 71.98 0.66 -1.93 16 4 C 0.10 1.89 4.62 31.12 0.14 2.03 16 5 H 0.10 1.54 7.96 -2.39 -0.02 1.53 16 6 O -0.57 -10.87 12.77 -148.98 -1.90 -12.77 16 7 C -0.16 -3.79 7.36 31.12 0.23 -3.56 16 8 C 0.06 1.56 3.56 45.44 0.16 1.72 16 9 H 0.07 1.89 7.85 -2.38 -0.02 1.87 16 10 N -0.68 -22.34 6.01 -488.84 -2.94 -25.27 16 11 C 0.09 3.58 5.49 86.30 0.47 4.05 16 12 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 13 C -0.53 -31.57 9.66 25.60 0.25 -31.32 16 14 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 15 C 0.01 0.36 5.47 84.65 0.46 0.82 16 16 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 17 Si 0.95 45.29 27.47 68.60 1.88 47.17 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 19 H -0.25 -10.92 6.54 99.48 0.65 -10.27 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H 0.05 1.29 6.79 -2.39 -0.02 1.27 16 22 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.05 1.36 7.19 -2.39 -0.02 1.34 16 24 H 0.06 1.10 7.94 -2.39 -0.02 1.08 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.39 4.05 9.12 -74.06 -0.68 3.37 16 28 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.08 2.24 7.65 -2.39 -0.02 2.22 16 30 H 0.34 10.70 7.09 -89.69 -0.64 10.06 16 31 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 32 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 33 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 34 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 35 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 Total: -1.00 -67.75 281.23 0.05 -67.70 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -0.30 Total: 15.37 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.01 Total: -31.99 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -2.64 Total: -85.48 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.90 Total: -12.77 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 1.88 Total: 47.17 kcal Total: -67.75 0.05 -67.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163629928.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.678 kcal (2) G-P(sol) polarization free energy of solvation -67.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds