Wall clock time and date at job start Sun Mar 29 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00270 * 2 1 4 4 H 1.07996 * 120.00707 * 202.33811 * 3 2 1 5 5 C 1.38816 * 119.99541 * 22.34111 * 3 2 1 6 6 N 1.31618 * 120.00103 * 11.35304 * 5 3 2 7 7 Si 1.86805 * 119.99742 * 191.36010 * 5 3 2 8 8 H 1.48501 * 109.47034 * 89.99787 * 7 5 3 9 9 H 1.48495 * 109.46910 * 209.99566 * 7 5 3 10 10 H 1.48498 * 109.47127 * 329.99667 * 7 5 3 11 11 C 1.46508 * 120.00152 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46683 * 269.99898 * 11 2 1 13 13 H 1.08994 * 110.27486 * 57.90410 * 12 11 2 14 14 C 1.54941 * 110.30502 * 179.97438 * 12 11 2 15 15 C 1.55303 * 100.93911 * 155.35650 * 14 12 11 16 16 C 1.54384 * 102.25664 * 325.86489 * 15 14 12 17 17 C 1.52998 * 109.82977 * 261.84266 * 16 15 14 18 18 C 1.52996 * 109.90691 * 140.90980 * 16 15 14 19 19 O 1.43239 * 107.58553 * 21.35733 * 16 15 14 20 20 H 1.08999 * 109.46926 * 274.20247 * 1 2 3 21 21 H 1.08997 * 109.47247 * 34.20786 * 1 2 3 22 22 H 1.09003 * 109.47042 * 154.20837 * 1 2 3 23 23 H 0.96998 * 119.99608 * 179.97438 * 6 5 3 24 24 H 1.08991 * 109.47238 * 149.99501 * 11 2 1 25 25 H 1.09003 * 109.46831 * 29.99206 * 11 2 1 26 26 H 1.09001 * 111.12726 * 273.27462 * 14 12 11 27 27 H 1.08995 * 111.13238 * 37.44163 * 14 12 11 28 28 H 1.09002 * 110.84868 * 84.05650 * 15 14 12 29 29 H 1.09007 * 110.84810 * 207.67265 * 15 14 12 30 30 H 1.08994 * 109.46805 * 179.58069 * 17 16 15 31 31 H 1.08995 * 109.47230 * 299.58387 * 17 16 15 32 32 H 1.09007 * 109.46700 * 59.58397 * 17 16 15 33 33 H 1.09000 * 109.47199 * 300.37189 * 18 16 15 34 34 H 1.09004 * 109.47119 * 60.36803 * 18 16 15 35 35 H 1.09005 * 109.47184 * 180.36773 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3554 5 6 1.5337 2.3429 0.4570 6 7 0.3841 2.2690 1.0936 7 14 2.3365 4.0048 0.1683 8 1 1.8675 4.5629 -1.1254 9 1 1.9679 4.9304 1.2694 10 1 3.8120 3.8420 0.1314 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 1.5093 -1.8098 1.9790 14 6 3.2266 -3.0530 1.4639 15 6 3.9147 -2.9735 2.8539 16 6 4.2005 -1.4627 2.9923 17 6 5.6512 -1.1711 2.6035 18 6 3.9494 -1.0148 4.4335 19 8 3.3118 -0.7713 2.1069 20 1 -0.3633 0.0753 1.0249 21 1 -0.3633 0.8499 -0.5777 22 1 -0.3633 -0.9253 -0.4472 23 1 -0.0461 3.0775 1.4132 24 1 3.1499 -1.1382 -0.5144 25 1 1.6084 -2.0282 -0.5146 26 1 2.5441 -3.9012 1.4114 27 1 3.9641 -3.0945 0.6624 28 1 3.2412 -3.3145 3.6402 29 1 4.8423 -3.5460 2.8609 30 1 5.8444 -0.1025 2.6961 31 1 6.3218 -1.7202 3.2645 32 1 5.8209 -1.4831 1.5729 33 1 2.9121 -1.2159 4.7010 34 1 4.6105 -1.5631 5.1047 35 1 4.1469 0.0535 4.5217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166169536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:53 Heat of formation + Delta-G solvation = -30.113351 kcal Electronic energy + Delta-G solvation = -15312.298353 eV Core-core repulsion = 12924.960952 eV Total energy + Delta-G solvation = -2387.337401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.26229 -35.40192 -32.70799 -31.63988 -30.61462 -27.23982 -26.99130 -25.67587 -23.51155 -21.21811 -20.26770 -19.28646 -16.70670 -15.84666 -15.01948 -14.68491 -14.02522 -13.54997 -13.28127 -13.07594 -12.83656 -12.62950 -12.00757 -11.82859 -11.73790 -11.27073 -11.09443 -11.02448 -10.77083 -10.53472 -10.50015 -10.35222 -10.16552 -10.01616 -9.81900 -9.58236 -8.74901 -8.32839 -6.56656 -5.52272 -2.95505 3.50451 3.55871 3.58218 4.37676 4.68097 4.91233 5.10805 5.25837 5.43699 5.53256 5.63813 5.69324 5.86275 5.89728 5.95111 6.03395 6.04315 6.16674 6.21807 6.26173 6.33870 6.49057 6.54041 6.63905 6.68520 6.83652 7.00858 7.50447 7.85464 8.00282 8.03778 8.59600 9.43945 10.05794 10.54173 11.54501 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.010809 C = 0.009184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.212486 B = 2589.832103 C = 3047.924956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.597 5.597 3 C -0.227 4.227 4 H 0.067 0.933 5 C -0.002 4.002 6 N -0.914 5.914 7 Si 0.902 3.098 8 H -0.291 1.291 9 H -0.293 1.293 10 H -0.281 1.281 11 C 0.152 3.848 12 C 0.064 3.936 13 H 0.056 0.944 14 C -0.154 4.154 15 C -0.144 4.144 16 C 0.092 3.908 17 C -0.148 4.148 18 C -0.150 4.150 19 O -0.331 6.331 20 H 0.027 0.973 21 H 0.045 0.955 22 H -0.006 1.006 23 H 0.248 0.752 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.345 -10.374 2.967 12.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.319 5.319 3 C -0.357 4.357 4 H 0.085 0.915 5 C -0.199 4.199 6 N -0.561 5.561 7 Si 0.733 3.267 8 H -0.219 1.219 9 H -0.220 1.220 10 H -0.206 1.206 11 C 0.024 3.976 12 C 0.003 3.997 13 H 0.074 0.926 14 C -0.192 4.192 15 C -0.182 4.182 16 C 0.052 3.948 17 C -0.205 4.205 18 C -0.208 4.208 19 O -0.249 6.249 20 H 0.045 0.955 21 H 0.064 0.936 22 H 0.012 0.988 23 H 0.058 0.942 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.224 -9.988 2.982 12.140 hybrid contribution 0.368 0.712 0.206 0.827 sum 6.592 -9.276 3.188 11.818 Atomic orbital electron populations 1.20800 0.82664 0.95359 0.99216 1.43939 1.01732 1.00707 1.85509 1.19123 0.97427 0.84927 1.34233 0.91540 1.24955 0.97845 0.98256 0.98830 1.70062 1.18131 1.26520 1.41369 0.86278 0.78864 0.84568 0.77014 1.21873 1.21985 1.20628 1.21053 0.96137 0.88777 0.91618 1.23927 0.92431 0.85910 0.97448 0.92625 1.23334 0.99836 0.99181 0.96886 1.23156 1.00781 0.96420 0.97845 1.22032 0.91173 0.90683 0.90953 1.22027 0.94962 1.02274 1.01243 1.22059 1.01494 1.02022 0.95184 1.88789 1.48774 1.30322 1.57057 0.95505 0.93628 0.98800 0.94165 0.93390 0.93412 0.90971 0.90882 0.91182 0.90994 0.92033 0.92640 0.92459 0.92507 0.92660 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.24 9.01 59.85 0.54 4.77 16 2 N -0.60 -15.80 2.91 -181.11 -0.53 -16.33 16 3 C -0.23 -6.59 9.21 -15.06 -0.14 -6.72 16 4 H 0.07 1.93 7.84 -52.49 -0.41 1.51 16 5 C 0.00 -0.06 5.13 -17.43 -0.09 -0.15 16 6 N -0.91 -28.00 10.59 55.49 0.59 -27.41 16 7 Si 0.90 23.16 29.57 -169.99 -5.03 18.13 16 8 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 9 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 C 0.15 3.28 5.46 -4.03 -0.02 3.25 16 12 C 0.06 1.27 3.70 -25.70 -0.09 1.17 16 13 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 14 C -0.15 -2.30 6.57 -24.49 -0.16 -2.46 16 15 C -0.14 -2.01 6.09 -24.78 -0.15 -2.16 16 16 C 0.09 1.55 1.27 -89.90 -0.11 1.43 16 17 C -0.15 -2.22 8.73 37.16 0.32 -1.89 16 18 C -0.15 -2.36 8.75 37.16 0.33 -2.03 16 19 O -0.33 -7.35 9.87 -35.23 -0.35 -7.70 16 20 H 0.03 0.75 7.42 -51.93 -0.39 0.36 16 21 H 0.04 1.25 7.19 -51.93 -0.37 0.88 16 22 H -0.01 -0.15 7.84 -51.93 -0.41 -0.55 16 23 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 24 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 25 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 28 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 29 H 0.07 0.85 7.82 -51.92 -0.41 0.44 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 281.53 15.07 4.24 4.24 Total: -1.00 -32.04 281.53 -6.81 -38.85 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -6.15 Total: -5.00 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 0.42 Total: -4.79 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.06 Total: -43.74 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.35 Total: -7.70 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.03 Total: 18.13 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.04 -6.81 -38.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166169536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.737 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds