Wall clock time and date at job start Sun Mar 29 2020 22:24:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00270 * 2 1 4 4 H 1.07996 * 120.00707 * 202.33811 * 3 2 1 5 5 C 1.38816 * 119.99541 * 22.34111 * 3 2 1 6 6 N 1.31618 * 120.00103 * 11.35304 * 5 3 2 7 7 Si 1.86805 * 119.99742 * 191.36010 * 5 3 2 8 8 H 1.48501 * 109.47034 * 89.99787 * 7 5 3 9 9 H 1.48495 * 109.46910 * 209.99566 * 7 5 3 10 10 H 1.48498 * 109.47127 * 329.99667 * 7 5 3 11 11 C 1.46508 * 120.00152 * 180.02562 * 2 1 3 12 12 C 1.53007 * 109.46683 * 269.99898 * 11 2 1 13 13 H 1.08994 * 110.27486 * 57.90410 * 12 11 2 14 14 C 1.54941 * 110.30502 * 179.97438 * 12 11 2 15 15 C 1.55303 * 100.93911 * 155.35650 * 14 12 11 16 16 C 1.54384 * 102.25664 * 325.86489 * 15 14 12 17 17 C 1.52998 * 109.82977 * 261.84266 * 16 15 14 18 18 C 1.52996 * 109.90691 * 140.90980 * 16 15 14 19 19 O 1.43239 * 107.58553 * 21.35733 * 16 15 14 20 20 H 1.08999 * 109.46926 * 274.20247 * 1 2 3 21 21 H 1.08997 * 109.47247 * 34.20786 * 1 2 3 22 22 H 1.09003 * 109.47042 * 154.20837 * 1 2 3 23 23 H 0.96998 * 119.99608 * 179.97438 * 6 5 3 24 24 H 1.08991 * 109.47238 * 149.99501 * 11 2 1 25 25 H 1.09003 * 109.46831 * 29.99206 * 11 2 1 26 26 H 1.09001 * 111.12726 * 273.27462 * 14 12 11 27 27 H 1.08995 * 111.13238 * 37.44163 * 14 12 11 28 28 H 1.09002 * 110.84868 * 84.05650 * 15 14 12 29 29 H 1.09007 * 110.84810 * 207.67265 * 15 14 12 30 30 H 1.08994 * 109.46805 * 179.58069 * 17 16 15 31 31 H 1.08995 * 109.47230 * 299.58387 * 17 16 15 32 32 H 1.09007 * 109.46700 * 59.58397 * 17 16 15 33 33 H 1.09000 * 109.47199 * 300.37189 * 18 16 15 34 34 H 1.09004 * 109.47119 * 60.36803 * 18 16 15 35 35 H 1.09005 * 109.47184 * 180.36773 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3554 5 6 1.5337 2.3429 0.4570 6 7 0.3841 2.2690 1.0936 7 14 2.3365 4.0048 0.1683 8 1 1.8675 4.5629 -1.1254 9 1 1.9679 4.9304 1.2694 10 1 3.8120 3.8420 0.1314 11 6 2.1976 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 1.5093 -1.8098 1.9790 14 6 3.2266 -3.0530 1.4639 15 6 3.9147 -2.9735 2.8539 16 6 4.2005 -1.4627 2.9923 17 6 5.6512 -1.1711 2.6035 18 6 3.9494 -1.0148 4.4335 19 8 3.3118 -0.7713 2.1069 20 1 -0.3633 0.0753 1.0249 21 1 -0.3633 0.8499 -0.5777 22 1 -0.3633 -0.9253 -0.4472 23 1 -0.0461 3.0775 1.4132 24 1 3.1499 -1.1382 -0.5144 25 1 1.6084 -2.0282 -0.5146 26 1 2.5441 -3.9012 1.4114 27 1 3.9641 -3.0945 0.6624 28 1 3.2412 -3.3145 3.6402 29 1 4.8423 -3.5460 2.8609 30 1 5.8444 -0.1025 2.6961 31 1 6.3218 -1.7202 3.2645 32 1 5.8209 -1.4831 1.5729 33 1 2.9121 -1.2159 4.7010 34 1 4.6105 -1.5631 5.1047 35 1 4.1469 0.0535 4.5217 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166169536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:53 Heat of formation + Delta-G solvation = -50.457153 kcal Electronic energy + Delta-G solvation = -15313.180526 eV Core-core repulsion = 12924.960952 eV Total energy + Delta-G solvation = -2388.219574 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.65227 -37.35905 -34.27952 -33.21365 -32.40905 -28.89162 -28.20078 -27.83815 -25.12837 -22.84499 -21.88909 -20.65051 -18.77159 -17.37070 -16.80693 -16.30243 -15.53144 -15.41066 -15.06613 -14.53631 -14.30619 -14.06957 -13.73564 -13.18285 -13.06582 -12.88452 -12.78522 -12.53896 -12.49118 -12.39285 -12.21130 -12.04679 -11.87042 -11.58232 -11.47998 -11.33192 -10.59565 -10.21149 -8.69739 -7.75108 -5.19944 1.44226 1.45947 1.54510 2.55314 3.04653 3.39104 3.70444 3.79587 3.97779 4.03921 4.24003 4.31256 4.43657 4.64166 4.69708 4.75561 4.80858 4.85325 4.90594 4.91982 4.97560 5.02217 5.13154 5.19736 5.32427 5.35346 5.42083 5.49063 5.67212 5.75817 6.38811 6.64305 7.24044 7.95055 8.36915 9.29946 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.031027 B = 0.010809 C = 0.009184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.212486 B = 2589.832103 C = 3047.924956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.616 5.616 3 C -0.229 4.229 4 H 0.062 0.938 5 C -0.060 4.060 6 N -0.945 5.945 7 Si 0.963 3.037 8 H -0.284 1.284 9 H -0.298 1.298 10 H -0.273 1.273 11 C 0.147 3.853 12 C 0.061 3.939 13 H 0.031 0.969 14 C -0.140 4.140 15 C -0.134 4.134 16 C 0.074 3.926 17 C -0.143 4.143 18 C -0.148 4.148 19 O -0.380 6.380 20 H -0.003 1.003 21 H 0.018 0.982 22 H 0.033 0.967 23 H 0.243 0.757 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.092 0.908 35 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.941 -12.300 2.938 14.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.338 5.338 3 C -0.359 4.359 4 H 0.080 0.920 5 C -0.253 4.253 6 N -0.593 5.593 7 Si 0.792 3.208 8 H -0.211 1.211 9 H -0.224 1.224 10 H -0.198 1.198 11 C 0.021 3.979 12 C 0.001 3.999 13 H 0.049 0.951 14 C -0.178 4.178 15 C -0.171 4.171 16 C 0.034 3.966 17 C -0.200 4.200 18 C -0.205 4.205 19 O -0.300 6.300 20 H 0.015 0.985 21 H 0.037 0.963 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.094 0.906 26 H 0.116 0.884 27 H 0.102 0.898 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.058 0.942 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.110 0.890 35 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.846 -11.951 2.944 14.597 hybrid contribution -0.097 1.247 0.214 1.268 sum 7.749 -10.705 3.158 13.588 Atomic orbital electron populations 1.20533 0.82760 0.96071 0.97250 1.44179 1.02076 1.01856 1.85695 1.19323 0.97191 0.86290 1.33126 0.92038 1.25688 0.98697 1.01565 0.99388 1.70240 1.19486 1.26796 1.42811 0.85312 0.78269 0.80454 0.76753 1.21106 1.22449 1.19833 1.21265 0.95969 0.87430 0.93206 1.23723 0.92247 0.88527 0.95396 0.95117 1.23256 0.99873 0.96701 0.97989 1.23138 1.02373 0.94286 0.97312 1.22428 0.91171 0.92609 0.90357 1.22007 0.94492 1.01463 1.02060 1.22061 1.01550 1.01173 0.95730 1.88734 1.49911 1.32994 1.58404 0.98507 0.96316 0.94888 0.94815 0.93493 0.90559 0.88437 0.89772 0.90401 0.87754 0.94156 0.89100 0.92569 0.93853 0.88976 0.94216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.35 9.01 127.77 1.15 10.50 16 2 N -0.62 -32.80 2.91 -726.92 -2.11 -34.91 16 3 C -0.23 -13.44 9.21 84.03 0.77 -12.67 16 4 H 0.06 3.60 7.84 -2.91 -0.02 3.58 16 5 C -0.06 -3.60 5.13 84.86 0.44 -3.17 16 6 N -0.94 -59.64 10.59 21.65 0.23 -59.41 16 7 Si 0.96 48.51 29.57 68.60 2.03 50.54 16 8 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 9 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 10 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 11 C 0.15 6.20 5.46 86.38 0.47 6.67 16 12 C 0.06 2.39 3.70 31.26 0.12 2.50 16 13 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 14 C -0.14 -3.71 6.57 32.05 0.21 -3.50 16 15 C -0.13 -3.23 6.09 31.86 0.19 -3.04 16 16 C 0.07 2.36 1.27 -10.33 -0.01 2.34 16 17 C -0.14 -3.98 8.73 71.98 0.63 -3.36 16 18 C -0.15 -4.49 8.75 71.98 0.63 -3.86 16 19 O -0.38 -16.93 9.87 -148.98 -1.47 -18.40 16 20 H 0.00 -0.20 7.42 -2.39 -0.02 -0.21 16 21 H 0.02 1.03 7.19 -2.39 -0.02 1.02 16 22 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 23 H 0.24 14.93 8.31 -92.71 -0.77 14.16 16 24 H 0.05 1.96 8.03 -2.39 -0.02 1.94 16 25 H 0.08 2.72 7.86 -2.39 -0.02 2.70 16 26 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.08 2.06 8.06 -2.39 -0.02 2.05 16 28 H 0.08 1.77 7.85 -2.39 -0.02 1.75 16 29 H 0.10 1.89 7.82 -2.38 -0.02 1.87 16 30 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -71.15 281.53 4.29 -66.86 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.02 Total: 2.90 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.60 Total: -7.57 kcal Atomic # 7 Polarization: -92.44 SS G_CDS: -1.88 Total: -94.32 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.47 Total: -18.40 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.54 kcal Total: -71.15 4.29 -66.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166169536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.399 kcal (2) G-P(sol) polarization free energy of solvation -71.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds