Wall clock time and date at job start Sun Mar 29 2020 21:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.45926 * 2 1 4 4 C 1.53037 * 109.44830 * 240.03296 * 2 1 3 5 5 C 1.53626 * 109.24214 * 178.49733 * 4 2 1 6 6 N 1.46929 * 108.53802 * 54.85872 * 5 4 2 7 7 C 1.36935 * 120.62881 * 126.37032 * 6 5 4 8 8 H 1.07998 * 119.99965 * 147.33506 * 7 6 5 9 9 C 1.38810 * 120.00224 * 327.33659 * 7 6 5 10 10 N 1.31622 * 119.99635 * 333.91375 * 9 7 6 11 11 Si 1.86794 * 120.00191 * 153.90775 * 9 7 6 12 12 H 1.48500 * 109.47623 * 270.00285 * 11 9 7 13 13 H 1.48499 * 109.46992 * 30.00388 * 11 9 7 14 14 H 1.48498 * 109.47145 * 150.00044 * 11 9 7 15 15 C 1.46926 * 118.73883 * 306.09035 * 6 5 4 16 16 H 1.09006 * 109.58612 * 293.93592 * 15 6 5 17 17 C 1.50695 * 109.58643 * 173.65325 * 15 6 5 18 18 O 1.20830 * 120.00033 * 322.29075 * 17 15 6 19 19 O 1.34229 * 120.00285 * 142.29330 * 17 15 6 20 20 C 1.53038 * 109.45731 * 119.97127 * 2 1 3 21 21 H 1.09005 * 109.47084 * 300.03000 * 1 2 3 22 22 H 1.08998 * 109.46916 * 60.02572 * 1 2 3 23 23 H 1.08995 * 109.47526 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.49791 * 298.57443 * 4 2 1 25 25 H 1.08999 * 109.49500 * 58.63858 * 4 2 1 26 26 H 1.08999 * 109.73781 * 295.12418 * 5 4 2 27 27 H 1.08994 * 109.66612 * 174.54830 * 5 4 2 28 28 H 0.97000 * 120.00188 * 354.01879 * 10 9 7 29 29 H 0.96703 * 116.99818 * 179.97438 * 19 17 15 30 30 H 1.09004 * 109.49908 * 61.42006 * 20 2 1 31 31 H 1.09004 * 109.49915 * 301.32717 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5754 -0.6852 -1.2645 6 7 4.0676 -1.2494 -0.0003 7 6 4.9759 -2.2741 -0.0004 8 1 5.7091 -2.3459 0.7893 9 6 4.9543 -3.2206 -1.0155 10 7 3.8340 -3.4685 -1.6604 11 14 6.5152 -4.1424 -1.4665 12 1 7.2462 -3.3927 -2.5195 13 1 7.3769 -4.2744 -0.2643 14 1 6.1634 -5.4928 -1.9741 15 6 3.5714 -0.6891 1.2640 16 1 3.9166 0.3396 1.3683 17 6 4.0833 -1.5131 2.4172 18 8 4.1674 -2.7138 2.3114 19 8 4.4458 -0.9133 3.5620 20 6 2.0398 -0.7209 1.2500 21 1 -0.3633 0.5143 0.8898 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3634 -1.0276 0.0005 24 1 1.6974 -1.7556 -1.2384 25 1 1.6565 -0.2210 -2.1398 26 1 3.9188 0.3446 -1.3633 27 1 3.9483 -1.2787 -2.0992 28 1 3.0058 -3.0551 -1.3705 29 1 4.7676 -1.4835 4.2736 30 1 1.6976 -1.7557 1.2383 31 1 1.6573 -0.2208 2.1398 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167582283.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:27 Heat of formation + Delta-G solvation = -102.494152 kcal Electronic energy + Delta-G solvation = -15273.297833 eV Core-core repulsion = 12746.988671 eV Total energy + Delta-G solvation = -2526.309162 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.40633 -39.27718 -36.95459 -35.66715 -33.26092 -31.77313 -29.08251 -25.93840 -25.32537 -23.47498 -21.72371 -21.04144 -19.19033 -18.89463 -17.23494 -16.84737 -16.21968 -15.73909 -15.54881 -15.14964 -14.68972 -14.46706 -14.08427 -13.75413 -13.34846 -12.81692 -12.61706 -12.54434 -12.37635 -12.18505 -12.02024 -11.94661 -11.74071 -11.45665 -11.14192 -10.90941 -10.36467 -8.86548 -8.17161 -5.38870 1.33339 1.54295 1.63076 1.79265 2.17439 2.65252 3.26746 3.46377 3.89561 3.96466 3.99899 4.27505 4.36815 4.58027 4.64098 4.74665 4.80412 4.84982 5.01392 5.02467 5.14101 5.21919 5.34183 5.41889 5.58883 5.68452 5.88396 6.50156 7.04868 7.19312 7.74554 8.15056 9.06550 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.026775 B = 0.014571 C = 0.010384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.483081 B = 1921.189229 C = 2695.811962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.077 4.077 3 H 0.087 0.913 4 C -0.124 4.124 5 C 0.150 3.850 6 N -0.605 5.605 7 C -0.329 4.329 8 H 0.036 0.964 9 C -0.070 4.070 10 N -0.939 5.939 11 Si 1.110 2.890 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.295 1.295 15 C 0.170 3.830 16 H 0.083 0.917 17 C 0.472 3.528 18 O -0.522 6.522 19 O -0.515 6.515 20 C -0.112 4.112 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.032 0.968 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.262 0.738 29 H 0.419 0.581 30 H 0.032 0.968 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 9.358 5.505 11.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.095 4.095 3 H 0.105 0.895 4 C -0.163 4.163 5 C 0.026 3.974 6 N -0.333 5.333 7 C -0.459 4.459 8 H 0.053 0.947 9 C -0.268 4.268 10 N -0.582 5.582 11 Si 0.936 3.064 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.221 1.221 15 C 0.063 3.937 16 H 0.100 0.900 17 C 0.314 3.686 18 O -0.408 6.408 19 O -0.328 6.328 20 C -0.152 4.152 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.058 0.942 24 H 0.051 0.949 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.279 0.721 30 H 0.051 0.949 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.321 8.175 4.137 9.746 hybrid contribution -0.375 0.052 1.628 1.672 sum -3.695 8.227 5.766 10.704 Atomic orbital electron populations 1.21773 0.93411 1.01361 1.02913 1.21001 0.96636 0.99191 0.92708 0.89470 1.22097 0.96381 0.99374 0.98481 1.21094 0.92970 0.95827 0.87511 1.44422 1.49877 1.39262 0.99712 1.19873 1.07712 1.05210 1.13061 0.94670 1.26972 1.04698 0.96295 0.98819 1.70825 0.99004 1.42759 1.45586 0.82915 0.72465 0.75121 0.75949 1.20229 1.21234 1.22113 1.20531 0.94448 0.95579 0.83110 0.89966 1.23766 0.73950 0.87376 0.83550 1.90726 1.50479 1.18326 1.81315 1.84499 1.77332 1.46141 1.24839 1.21966 0.93025 1.00087 1.00095 0.90922 0.91201 0.94242 0.94912 0.90481 0.94146 0.93264 0.92644 0.72067 0.94906 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.19 71.98 0.66 -2.75 16 2 C -0.08 -2.38 2.68 -10.77 -0.03 -2.41 16 3 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 4 C -0.12 -4.76 5.19 30.82 0.16 -4.60 16 5 C 0.15 6.83 5.50 86.51 0.48 7.31 16 6 N -0.61 -30.44 2.77 -678.55 -1.88 -32.32 16 7 C -0.33 -19.09 7.29 84.03 0.61 -18.48 16 8 H 0.04 2.16 6.64 -2.91 -0.02 2.14 16 9 C -0.07 -4.17 4.67 84.86 0.40 -3.77 16 10 N -0.94 -58.37 12.36 21.65 0.27 -58.10 16 11 Si 1.11 54.12 29.99 68.60 2.06 56.17 16 12 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 13 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 14 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 15 C 0.17 7.03 3.37 44.23 0.15 7.18 16 16 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 17 C 0.47 20.17 6.57 71.23 0.47 20.64 16 18 O -0.52 -27.33 15.05 21.95 0.33 -27.00 16 19 O -0.51 -16.34 13.42 -51.41 -0.69 -17.03 16 20 C -0.11 -3.99 4.63 30.67 0.14 -3.85 16 21 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.03 1.48 6.47 -2.39 -0.02 1.47 16 25 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.05 2.60 6.05 -2.39 -0.01 2.58 16 28 H 0.26 16.29 5.44 -92.71 -0.50 15.79 16 29 H 0.42 9.40 9.10 -74.06 -0.67 8.73 16 30 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -73.04 250.98 3.84 -69.20 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: 0.72 Total: 9.81 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 3.04 Total: -0.74 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -1.61 Total: -90.42 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -0.36 Total: -44.03 kcal Atomic # 14 Polarization: 54.12 SS G_CDS: 2.06 Total: 56.17 kcal Total: -73.04 3.84 -69.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167582283.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.294 kcal (2) G-P(sol) polarization free energy of solvation -73.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds