Wall clock time and date at job start Sun Mar 29 2020 22:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48503 * 109.47327 * 270.00101 * 3 2 1 5 5 H 1.48502 * 109.47312 * 30.00109 * 3 2 1 6 6 H 1.48498 * 109.47357 * 149.99828 * 3 2 1 7 7 C 1.37871 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00515 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99681 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46466 * 179.97438 * 11 10 9 13 13 C 1.53000 * 110.01966 * 58.61287 * 12 11 10 14 14 O 1.42899 * 109.46583 * 301.38986 * 13 12 11 15 15 C 1.54268 * 110.07662 * 297.18856 * 12 11 10 16 16 C 1.54882 * 104.19992 * 264.30581 * 15 12 11 17 17 C 1.54897 * 102.74839 * 322.05790 * 16 15 12 18 18 C 1.53876 * 110.02911 * 180.02562 * 12 11 10 19 19 H 0.97001 * 119.99398 * 359.97438 * 1 2 3 20 20 H 1.08991 * 109.47019 * 59.99875 * 9 7 2 21 21 H 1.09002 * 109.46754 * 300.00197 * 9 7 2 22 22 H 1.00902 * 110.99723 * 303.95172 * 10 9 7 23 23 H 1.09004 * 109.47230 * 60.00380 * 11 10 9 24 24 H 1.08993 * 109.47236 * 299.99713 * 11 10 9 25 25 H 1.08999 * 109.47234 * 61.38352 * 13 12 11 26 26 H 1.08997 * 109.47228 * 181.39022 * 13 12 11 27 27 H 0.96702 * 113.99914 * 179.97438 * 14 13 12 28 28 H 1.09003 * 110.48471 * 145.62888 * 15 12 11 29 29 H 1.09004 * 110.48268 * 22.98655 * 15 12 11 30 30 H 1.08994 * 110.76048 * 203.74464 * 16 15 12 31 31 H 1.09004 * 110.75771 * 80.36858 * 16 15 12 32 32 H 1.08999 * 110.48266 * 156.62203 * 17 16 15 33 33 H 1.08999 * 110.48462 * 279.12630 * 17 16 15 34 34 H 1.08998 * 110.03805 * 0.05292 * 18 12 11 35 35 H 1.09002 * 110.03703 * 238.61507 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9070 0.0001 12 6 2.5300 -6.0430 -0.0006 13 6 3.4377 -5.9303 1.2259 14 8 4.1001 -4.6642 1.2134 15 6 3.3754 -5.9928 -1.2900 16 6 2.6727 -6.9903 -2.2441 17 6 2.2425 -8.1314 -1.2890 18 6 1.8097 -7.4028 -0.0006 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8902 21 1 0.6246 -2.5571 0.8897 22 1 2.8404 -3.5488 -0.7819 23 1 0.8799 -4.9817 -0.8897 24 1 0.8806 -4.9812 0.8903 25 1 2.8373 -6.0172 2.1315 26 1 4.1794 -6.7286 1.2037 27 1 4.6932 -4.5231 1.9640 28 1 4.3976 -6.3132 -1.0887 29 1 3.3657 -4.9885 -1.7136 30 1 3.3682 -7.3592 -2.9978 31 1 1.8027 -6.5297 -2.7121 32 1 1.4060 -8.6878 -1.7120 33 1 3.0811 -8.7984 -1.0895 34 1 0.7300 -7.2534 -0.0011 35 1 2.1065 -7.9826 0.8734 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168630180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:12 Heat of formation + Delta-G solvation = -61.829068 kcal Electronic energy + Delta-G solvation = -14838.009596 eV Core-core repulsion = 12449.296899 eV Total energy + Delta-G solvation = -2388.712697 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.14322 -35.49538 -34.54715 -32.27196 -30.07162 -28.56861 -26.65041 -24.36087 -23.27276 -21.40785 -20.24155 -18.35625 -16.75136 -16.26843 -15.57092 -15.03083 -14.46127 -14.19297 -14.04200 -13.47604 -12.75823 -12.56654 -12.37618 -11.74790 -11.41998 -11.16338 -11.09388 -10.97476 -10.76981 -10.64089 -10.53433 -10.46129 -10.20560 -10.01533 -9.69186 -9.29239 -8.99191 -8.36440 -6.87720 -5.92355 -3.92697 3.38101 3.43517 3.49101 4.49970 4.54752 4.77509 4.79500 5.11155 5.39012 5.43272 5.49631 5.56841 5.63152 5.76516 5.77185 5.88203 5.93752 5.98365 6.03857 6.12078 6.16681 6.36679 6.45078 6.47847 6.63212 6.69636 7.43264 7.59798 7.94310 8.29627 8.30240 8.66816 8.86997 9.19161 9.71690 11.19084 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046571 B = 0.006935 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.089420 B = 4036.355769 C = 4204.327823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.898 3.102 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.504 4.504 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.662 5.662 11 C 0.078 3.922 12 C -0.061 4.061 13 C 0.102 3.898 14 O -0.527 6.527 15 C -0.106 4.106 16 C -0.129 4.129 17 C -0.122 4.122 18 C -0.115 4.115 19 H 0.259 0.741 20 H -0.021 1.021 21 H 0.023 0.977 22 H 0.327 0.673 23 H 0.012 0.988 24 H 0.057 0.943 25 H 0.033 0.967 26 H 0.026 0.974 27 H 0.359 0.641 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.740 -15.108 -0.502 16.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.148 4.148 3 Si 0.726 3.274 4 H -0.209 1.209 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.294 5.294 11 C -0.053 4.053 12 C -0.062 4.062 13 C 0.023 3.977 14 O -0.328 6.328 15 C -0.144 4.144 16 C -0.166 4.166 17 C -0.159 4.159 18 C -0.153 4.153 19 H 0.069 0.931 20 H -0.003 1.003 21 H 0.041 0.959 22 H 0.146 0.854 23 H 0.030 0.970 24 H 0.076 0.924 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.203 0.797 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.314 -14.890 -0.365 15.814 hybrid contribution 0.227 0.787 -0.316 0.878 sum 5.541 -14.103 -0.681 15.167 Atomic orbital electron populations 1.69981 1.06071 1.26505 1.51663 1.25004 0.94852 0.99287 0.95704 0.86504 0.79806 0.83188 0.77913 1.20860 1.21388 1.19807 1.21231 0.93569 0.90256 1.49218 0.91926 1.19542 0.90747 0.87995 0.95154 1.60551 1.19613 1.00033 1.49200 1.21846 0.93962 0.90585 0.98892 1.21310 0.95403 0.94613 0.94840 1.21979 0.93554 0.85721 0.96410 1.86924 1.62219 1.34700 1.48975 1.22348 0.98150 0.99550 0.94315 1.22550 1.00195 0.96346 0.97516 1.22318 1.00396 0.97484 0.95746 1.22159 1.00416 0.94968 0.97727 0.93126 1.00334 0.95908 0.85415 0.96985 0.92441 0.94860 0.95603 0.79690 0.91882 0.91071 0.92006 0.91611 0.92044 0.92000 0.91391 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.29 55.43 0.74 -27.23 16 2 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 3 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 6 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.50 -14.95 9.32 -34.44 -0.32 -15.27 16 8 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 9 C 0.19 5.34 5.44 -4.97 -0.03 5.32 16 10 N -0.66 -15.10 4.28 -115.06 -0.49 -15.59 16 11 C 0.08 1.48 4.41 -3.83 -0.02 1.46 16 12 C -0.06 -0.92 0.65 -153.39 -0.10 -1.02 16 13 C 0.10 1.47 5.56 37.16 0.21 1.68 16 14 O -0.53 -8.78 11.17 -35.23 -0.39 -9.18 16 15 C -0.11 -1.52 5.51 -25.07 -0.14 -1.66 16 16 C -0.13 -1.57 6.91 -24.74 -0.17 -1.74 16 17 C -0.12 -1.33 6.83 -25.10 -0.17 -1.50 16 18 C -0.11 -1.41 6.11 -25.64 -0.16 -1.56 16 19 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 20 H -0.02 -0.62 8.14 -51.93 -0.42 -1.04 16 21 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.33 7.40 6.72 -39.29 -0.26 7.14 16 23 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.03 0.32 8.12 -51.93 -0.42 -0.10 16 27 H 0.36 4.54 9.12 45.56 0.42 4.95 16 28 H 0.06 0.86 7.84 -51.93 -0.41 0.45 16 29 H 0.07 1.17 6.08 -51.93 -0.32 0.85 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.85 7.67 -51.93 -0.40 0.45 16 35 H 0.06 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 278.40 15.07 4.20 4.20 Total: -1.00 -32.14 278.40 -7.11 -39.25 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.14 Total: 3.98 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: -0.99 Total: -12.85 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.24 Total: -42.82 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.39 Total: -9.18 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.14 -7.11 -39.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168630180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.582 kcal (2) G-P(sol) polarization free energy of solvation -32.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds