Wall clock time and date at job start Sun Mar 29 2020 22:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 120.00279 * 2 1 4 4 H 1.48503 * 109.47327 * 270.00101 * 3 2 1 5 5 H 1.48502 * 109.47312 * 30.00109 * 3 2 1 6 6 H 1.48498 * 109.47357 * 149.99828 * 3 2 1 7 7 C 1.37871 * 119.99568 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99892 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00515 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.47508 * 180.02562 * 9 7 2 11 11 C 1.46897 * 110.99681 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46466 * 179.97438 * 11 10 9 13 13 C 1.53000 * 110.01966 * 58.61287 * 12 11 10 14 14 O 1.42899 * 109.46583 * 301.38986 * 13 12 11 15 15 C 1.54268 * 110.07662 * 297.18856 * 12 11 10 16 16 C 1.54882 * 104.19992 * 264.30581 * 15 12 11 17 17 C 1.54897 * 102.74839 * 322.05790 * 16 15 12 18 18 C 1.53876 * 110.02911 * 180.02562 * 12 11 10 19 19 H 0.97001 * 119.99398 * 359.97438 * 1 2 3 20 20 H 1.08991 * 109.47019 * 59.99875 * 9 7 2 21 21 H 1.09002 * 109.46754 * 300.00197 * 9 7 2 22 22 H 1.00902 * 110.99723 * 303.95172 * 10 9 7 23 23 H 1.09004 * 109.47230 * 60.00380 * 11 10 9 24 24 H 1.08993 * 109.47236 * 299.99713 * 11 10 9 25 25 H 1.08999 * 109.47234 * 61.38352 * 13 12 11 26 26 H 1.08997 * 109.47228 * 181.39022 * 13 12 11 27 27 H 0.96702 * 113.99914 * 179.97438 * 14 13 12 28 28 H 1.09003 * 110.48471 * 145.62888 * 15 12 11 29 29 H 1.09004 * 110.48268 * 22.98655 * 15 12 11 30 30 H 1.08994 * 110.76048 * 203.74464 * 16 15 12 31 31 H 1.09004 * 110.75771 * 80.36858 * 16 15 12 32 32 H 1.08999 * 110.48266 * 156.62203 * 17 16 15 33 33 H 1.08999 * 110.48462 * 279.12630 * 17 16 15 34 34 H 1.08998 * 110.03805 * 0.05292 * 18 12 11 35 35 H 1.09002 * 110.03703 * 238.61507 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4468 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5051 -4.9070 0.0001 12 6 2.5300 -6.0430 -0.0006 13 6 3.4377 -5.9303 1.2259 14 8 4.1001 -4.6642 1.2134 15 6 3.3754 -5.9928 -1.2900 16 6 2.6727 -6.9903 -2.2441 17 6 2.2425 -8.1314 -1.2890 18 6 1.8097 -7.4028 -0.0006 19 1 -0.4849 0.8401 0.0004 20 1 0.6240 -2.5567 -0.8902 21 1 0.6246 -2.5571 0.8897 22 1 2.8404 -3.5488 -0.7819 23 1 0.8799 -4.9817 -0.8897 24 1 0.8806 -4.9812 0.8903 25 1 2.8373 -6.0172 2.1315 26 1 4.1794 -6.7286 1.2037 27 1 4.6932 -4.5231 1.9640 28 1 4.3976 -6.3132 -1.0887 29 1 3.3657 -4.9885 -1.7136 30 1 3.3682 -7.3592 -2.9978 31 1 1.8027 -6.5297 -2.7121 32 1 1.4060 -8.6878 -1.7120 33 1 3.0811 -8.7984 -1.0895 34 1 0.7300 -7.2534 -0.0011 35 1 2.1065 -7.9826 0.8734 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168630180.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:12 Heat of formation + Delta-G solvation = -85.046389 kcal Electronic energy + Delta-G solvation = -14839.016374 eV Core-core repulsion = 12449.296899 eV Total energy + Delta-G solvation = -2389.719476 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.34000 -36.67108 -36.45356 -34.37632 -31.45408 -29.67045 -28.56803 -25.88065 -24.67057 -23.37570 -21.32806 -19.65786 -18.48124 -17.89176 -16.97163 -16.60483 -16.13242 -15.62818 -15.31038 -14.98409 -14.42197 -14.08157 -13.89664 -13.38931 -13.19528 -12.79756 -12.67317 -12.56098 -12.18129 -11.96852 -11.88971 -11.70326 -11.48563 -11.40475 -11.31617 -11.06163 -10.64970 -10.47095 -8.82030 -8.21002 -6.31968 1.40103 1.42749 1.54937 2.41127 3.11451 3.42337 3.57579 3.69627 3.96982 4.19758 4.32310 4.45653 4.53106 4.54807 4.69804 4.71484 4.81115 4.85552 4.92268 4.99863 5.09146 5.12350 5.22515 5.23350 5.30125 5.43859 5.48157 5.51914 5.65019 6.07146 6.57162 6.82000 6.98809 7.27144 7.39274 8.90998 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.046571 B = 0.006935 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.089420 B = 4036.355769 C = 4204.327823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.003 4.003 3 Si 0.977 3.023 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.654 5.654 11 C 0.077 3.923 12 C -0.060 4.060 13 C 0.100 3.900 14 O -0.558 6.558 15 C -0.106 4.106 16 C -0.128 4.128 17 C -0.114 4.114 18 C -0.112 4.112 19 H 0.264 0.736 20 H -0.051 1.051 21 H -0.008 1.008 22 H 0.329 0.671 23 H 0.003 0.997 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.057 0.943 27 H 0.375 0.625 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.060 0.940 35 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.280 -16.040 -0.491 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.201 4.201 3 Si 0.800 3.200 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.081 0.919 9 C 0.079 3.921 10 N -0.285 5.285 11 C -0.053 4.053 12 C -0.060 4.060 13 C 0.022 3.978 14 O -0.362 6.362 15 C -0.143 4.143 16 C -0.165 4.165 17 C -0.151 4.151 18 C -0.150 4.150 19 H 0.073 0.927 20 H -0.034 1.034 21 H 0.010 0.990 22 H 0.148 0.852 23 H 0.021 0.979 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.867 -15.850 -0.349 17.277 hybrid contribution -0.284 1.041 -0.309 1.123 sum 6.583 -14.809 -0.658 16.219 Atomic orbital electron populations 1.70117 1.07910 1.27910 1.51960 1.26017 0.95824 1.03538 0.94674 0.85280 0.78468 0.77719 0.78487 1.19660 1.20582 1.18813 1.21532 0.93708 0.91382 1.50011 0.91907 1.19210 0.90769 0.89859 0.92235 1.60476 1.18579 1.00280 1.49163 1.21944 0.95064 0.90461 0.97831 1.21342 0.94643 0.94215 0.95849 1.22092 0.94074 0.85809 0.95839 1.86857 1.62941 1.36151 1.50264 1.22324 0.98991 0.98669 0.94361 1.22548 0.99834 0.96301 0.97822 1.22310 1.01610 0.96990 0.94238 1.22160 0.99707 0.93524 0.99638 0.92692 1.03386 0.98956 0.85188 0.97912 0.93543 0.94953 0.92484 0.77873 0.90634 0.93945 0.90189 0.93091 0.90733 0.90000 0.92096 0.89853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.26 13.29 21.45 0.28 -58.97 16 2 C 0.00 -0.19 5.46 84.65 0.46 0.28 16 3 Si 0.98 46.10 29.54 68.60 2.03 48.13 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 7 C -0.53 -32.01 9.32 25.60 0.24 -31.77 16 8 H 0.06 3.73 7.81 -2.91 -0.02 3.70 16 9 C 0.21 12.05 5.44 85.56 0.47 12.51 16 10 N -0.65 -30.80 4.28 -517.94 -2.22 -33.01 16 11 C 0.08 3.01 4.41 86.30 0.38 3.39 16 12 C -0.06 -1.74 0.65 -51.46 -0.03 -1.77 16 13 C 0.10 2.71 5.56 71.98 0.40 3.11 16 14 O -0.56 -18.14 11.17 -148.98 -1.66 -19.81 16 15 C -0.11 -2.91 5.51 31.67 0.17 -2.74 16 16 C -0.13 -2.88 6.91 31.89 0.22 -2.66 16 17 C -0.11 -2.12 6.83 31.65 0.22 -1.91 16 18 C -0.11 -2.50 6.11 31.30 0.19 -2.31 16 19 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 20 H -0.05 -3.22 8.14 -2.39 -0.02 -3.24 16 21 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 22 H 0.33 15.37 6.72 -89.69 -0.60 14.77 16 23 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 24 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.06 1.22 8.12 -2.39 -0.02 1.20 16 27 H 0.37 9.09 9.12 -74.06 -0.68 8.42 16 28 H 0.08 1.89 7.84 -2.39 -0.02 1.87 16 29 H 0.04 1.40 6.08 -2.39 -0.01 1.39 16 30 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.44 7.67 -2.39 -0.02 1.42 16 35 H 0.08 1.53 7.67 -2.39 -0.02 1.52 16 Total: -1.00 -70.06 278.40 0.93 -69.13 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.21 Total: 18.41 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 2.72 Total: -23.87 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.93 Total: -91.99 kcal Atomic # 8 Polarization: -18.14 SS G_CDS: -1.66 Total: -19.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -70.06 0.93 -69.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168630180.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.913 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds