Wall clock time and date at job start Sun Mar 29 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.46848 * 2 1 4 4 C 1.34227 * 116.99831 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00277 * 180.02562 * 4 3 2 7 7 H 1.09008 * 110.77748 * 298.21935 * 6 4 3 8 8 C 1.55153 * 110.72354 * 174.98031 * 6 4 3 9 9 C 1.55131 * 101.48647 * 205.96741 * 8 6 4 10 10 N 1.47426 * 104.71847 * 37.29562 * 9 8 6 11 11 C 1.36945 * 125.64675 * 155.81671 * 10 9 8 12 12 H 1.07997 * 119.99756 * 179.68946 * 11 10 9 13 13 C 1.38805 * 119.99878 * 359.68852 * 11 10 9 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00277 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00228 * 15 13 11 18 18 H 1.48499 * 109.46981 * 150.00382 * 15 13 11 19 19 C 1.47026 * 108.70569 * 335.55014 * 10 9 8 20 20 H 1.08994 * 109.47109 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47015 * 300.00102 * 1 2 3 22 22 H 1.09002 * 109.47059 * 60.00020 * 1 2 3 23 23 H 1.08994 * 109.46789 * 240.00390 * 2 1 3 24 24 H 1.09002 * 109.47059 * 119.99980 * 2 1 3 25 25 H 1.08999 * 111.00098 * 324.21115 * 8 6 4 26 26 H 1.08999 * 111.00564 * 88.05764 * 8 6 4 27 27 H 1.08994 * 110.50226 * 278.45550 * 9 8 6 28 28 H 1.09001 * 110.34274 * 156.05220 * 9 8 6 29 29 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.87851 * 120.70448 * 19 10 9 31 31 H 1.08997 * 109.88162 * 241.71678 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9375 0.0012 7 1 3.6236 3.4793 -0.8968 8 6 5.4664 2.8922 0.1287 9 6 5.7635 4.2707 0.7753 10 7 4.6512 4.4899 1.7177 11 6 4.6898 5.2957 2.8243 12 1 3.8162 5.3938 3.4515 13 6 5.8519 5.9863 3.1397 14 7 6.9165 5.8670 2.3750 15 14 5.9043 7.0860 4.6488 16 1 5.4847 8.4604 4.2746 17 1 4.9826 6.5514 5.6832 18 1 7.2874 7.1204 5.1884 19 6 3.4916 3.7052 1.2691 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 5.7809 2.0759 0.7789 26 1 5.9371 2.8126 -0.8512 27 1 5.7777 5.0531 0.0166 28 1 6.7132 4.2418 1.3095 29 1 7.7284 6.3499 2.5952 30 1 3.1973 3.0009 2.0472 31 1 2.6601 4.3713 1.0385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000200783055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:14 Heat of formation + Delta-G solvation = -67.052571 kcal Electronic energy + Delta-G solvation = -14384.135096 eV Core-core repulsion = 11859.362796 eV Total energy + Delta-G solvation = -2524.772300 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.29902 -37.32366 -36.15400 -32.69457 -31.67228 -29.56430 -28.08970 -24.92425 -23.50084 -21.85218 -20.23378 -19.65017 -17.33653 -16.95440 -16.51837 -15.91846 -14.70103 -14.59523 -13.70041 -13.68892 -12.96463 -12.75653 -12.50783 -12.09361 -11.82659 -11.64499 -11.54712 -11.02278 -10.83044 -10.62536 -10.47929 -10.41892 -10.12752 -9.91184 -9.87689 -9.56777 -8.66063 -6.86874 -5.66566 -3.09255 2.51314 2.90416 3.40724 3.45441 3.47746 4.47540 4.87797 4.88999 4.99936 5.20522 5.25583 5.38039 5.49273 5.64349 5.71424 5.74637 5.81857 5.92506 6.30925 6.45476 6.52373 6.60574 6.69692 6.78168 7.49273 7.61107 7.83216 8.05169 8.34183 9.19902 9.80149 10.43873 11.37508 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.007042 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.675987 B = 3975.421985 C = 4348.333772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.358 6.358 4 C 0.477 3.523 5 O -0.512 6.512 6 C -0.098 4.098 7 H 0.109 0.891 8 C -0.126 4.126 9 C 0.150 3.850 10 N -0.604 5.604 11 C -0.224 4.224 12 H 0.079 0.921 13 C -0.010 4.010 14 N -0.922 5.922 15 Si 0.917 3.083 16 H -0.288 1.288 17 H -0.281 1.281 18 H -0.290 1.290 19 C 0.153 3.847 20 H 0.076 0.924 21 H 0.067 0.933 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.017 0.983 28 H 0.112 0.888 29 H 0.253 0.747 30 H 0.026 0.974 31 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.111 -8.315 -5.502 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.015 4.015 3 O -0.275 6.275 4 C 0.320 3.680 5 O -0.399 6.399 6 C -0.117 4.117 7 H 0.127 0.873 8 C -0.165 4.165 9 C 0.025 3.975 10 N -0.331 5.331 11 C -0.352 4.352 12 H 0.097 0.903 13 C -0.206 4.206 14 N -0.571 5.571 15 Si 0.747 3.253 16 H -0.216 1.216 17 H -0.207 1.207 18 H -0.216 1.216 19 C 0.026 3.974 20 H 0.094 0.906 21 H 0.086 0.914 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.035 0.965 28 H 0.130 0.870 29 H 0.064 0.936 30 H 0.043 0.957 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.771 -8.494 -5.373 13.340 hybrid contribution -0.037 0.374 0.638 0.740 sum -8.808 -8.120 -4.735 12.882 Atomic orbital electron populations 1.21792 0.92875 1.02613 1.03563 1.22962 0.95225 0.80995 1.02318 1.86562 1.25156 1.31634 1.84129 1.23882 0.79990 0.92866 0.71254 1.90612 1.60452 1.43218 1.45656 1.22225 0.98450 0.88835 1.02223 0.87343 1.23108 0.90213 1.02005 1.01152 1.22082 0.95308 0.88820 0.91286 1.44514 1.08132 1.52486 1.27953 1.19086 0.97748 1.18348 1.00059 0.90315 1.24801 0.95959 1.00545 0.99272 1.69778 1.02617 1.45839 1.38830 0.86035 0.76888 0.80332 0.82012 1.21565 1.20661 1.21608 1.21096 0.91810 0.93232 0.91240 0.90562 0.91383 0.91574 0.91568 0.91418 0.90804 0.91608 0.96502 0.87010 0.93622 0.95658 0.94723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.29 37.16 0.38 -0.98 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.36 -5.62 10.20 -39.25 -0.40 -6.02 16 4 C 0.48 8.54 7.12 36.01 0.26 8.80 16 5 O -0.51 -10.15 15.51 -18.75 -0.29 -10.44 16 6 C -0.10 -1.82 3.45 -89.94 -0.31 -2.13 16 7 H 0.11 1.77 8.14 -51.92 -0.42 1.35 16 8 C -0.13 -2.55 6.15 -24.46 -0.15 -2.70 16 9 C 0.15 3.68 5.91 -2.41 -0.01 3.66 16 10 N -0.60 -15.74 3.39 -169.93 -0.58 -16.31 16 11 C -0.22 -6.30 10.27 -15.06 -0.15 -6.45 16 12 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 13 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 14 N -0.92 -26.91 10.08 55.49 0.56 -26.35 16 15 Si 0.92 22.07 29.55 -169.99 -5.02 17.04 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 C 0.15 3.27 6.81 -3.06 -0.02 3.25 16 20 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 21 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 0.77 8.13 -51.93 -0.42 0.35 16 24 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 25 H 0.07 1.58 7.49 -51.93 -0.39 1.19 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.11 3.08 5.86 -51.93 -0.30 2.78 16 29 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 30 H 0.03 0.55 7.81 -51.93 -0.41 0.15 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 262.30 15.07 3.95 3.95 Total: -1.00 -31.07 262.30 -6.10 -37.17 By element: Atomic # 1 Polarization: 1.37 SS G_CDS: -4.45 Total: -3.08 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 0.12 Total: 4.02 kcal Atomic # 7 Polarization: -42.65 SS G_CDS: -0.02 Total: -42.66 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.69 Total: -16.45 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.07 -6.10 -37.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200783055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.880 kcal (2) G-P(sol) polarization free energy of solvation -31.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds