Wall clock time and date at job start Sun Mar 29 2020 22:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45197 * 109.46848 * 2 1 4 4 C 1.34227 * 116.99831 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00316 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.00277 * 180.02562 * 4 3 2 7 7 H 1.09008 * 110.77748 * 298.21935 * 6 4 3 8 8 C 1.55153 * 110.72354 * 174.98031 * 6 4 3 9 9 C 1.55131 * 101.48647 * 205.96741 * 8 6 4 10 10 N 1.47426 * 104.71847 * 37.29562 * 9 8 6 11 11 C 1.36945 * 125.64675 * 155.81671 * 10 9 8 12 12 H 1.07997 * 119.99756 * 179.68946 * 11 10 9 13 13 C 1.38805 * 119.99878 * 359.68852 * 11 10 9 14 14 N 1.31624 * 120.00257 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 119.99929 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47174 * 270.00277 * 15 13 11 17 17 H 1.48501 * 109.47062 * 30.00228 * 15 13 11 18 18 H 1.48499 * 109.46981 * 150.00382 * 15 13 11 19 19 C 1.47026 * 108.70569 * 335.55014 * 10 9 8 20 20 H 1.08994 * 109.47109 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.47015 * 300.00102 * 1 2 3 22 22 H 1.09002 * 109.47059 * 60.00020 * 1 2 3 23 23 H 1.08994 * 109.46789 * 240.00390 * 2 1 3 24 24 H 1.09002 * 109.47059 * 119.99980 * 2 1 3 25 25 H 1.08999 * 111.00098 * 324.21115 * 8 6 4 26 26 H 1.08999 * 111.00564 * 88.05764 * 8 6 4 27 27 H 1.08994 * 110.50226 * 278.45550 * 9 8 6 28 28 H 1.09001 * 110.34274 * 156.05220 * 9 8 6 29 29 H 0.97001 * 119.99885 * 179.97438 * 14 13 11 30 30 H 1.09003 * 109.87851 * 120.70448 * 19 10 9 31 31 H 1.08997 * 109.88162 * 241.71678 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9208 2.9375 0.0012 7 1 3.6236 3.4793 -0.8968 8 6 5.4664 2.8922 0.1287 9 6 5.7635 4.2707 0.7753 10 7 4.6512 4.4899 1.7177 11 6 4.6898 5.2957 2.8243 12 1 3.8162 5.3938 3.4515 13 6 5.8519 5.9863 3.1397 14 7 6.9165 5.8670 2.3750 15 14 5.9043 7.0860 4.6488 16 1 5.4847 8.4604 4.2746 17 1 4.9826 6.5514 5.6832 18 1 7.2874 7.1204 5.1884 19 6 3.4916 3.7052 1.2691 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 5.7809 2.0759 0.7789 26 1 5.9371 2.8126 -0.8512 27 1 5.7777 5.0531 0.0166 28 1 6.7132 4.2418 1.3095 29 1 7.7284 6.3499 2.5952 30 1 3.1973 3.0009 2.0472 31 1 2.6601 4.3713 1.0385 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000200783055.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:14 Heat of formation + Delta-G solvation = -85.876828 kcal Electronic energy + Delta-G solvation = -14384.951377 eV Core-core repulsion = 11859.362796 eV Total energy + Delta-G solvation = -2525.588581 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 213.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.68510 -38.98166 -37.58148 -34.64467 -32.66011 -31.46319 -29.80861 -26.86915 -24.73152 -23.15278 -22.14578 -21.14428 -18.95226 -18.71394 -17.86503 -17.28113 -16.67410 -16.16048 -15.40271 -14.97603 -14.38734 -14.21710 -13.83556 -13.63554 -13.48996 -13.00594 -12.86304 -12.72134 -12.51249 -12.24554 -12.13800 -12.01025 -11.86825 -11.54364 -11.47267 -11.39643 -10.74461 -8.92796 -7.78412 -5.24086 1.10067 1.48909 1.50858 1.59453 1.65959 2.50016 3.32432 3.46177 3.63560 3.90661 3.97003 4.03211 4.10926 4.24333 4.36285 4.57817 4.69208 4.83419 4.91187 4.94416 4.97790 5.12754 5.15273 5.43086 5.46117 5.60191 5.77380 6.28900 6.69414 7.08722 7.74291 8.37448 9.23949 Molecular weight = 213.12amu Principal moments of inertia in cm(-1) A = 0.052258 B = 0.007042 C = 0.006438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.675987 B = 3975.421985 C = 4348.333772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 O -0.358 6.358 4 C 0.485 3.515 5 O -0.534 6.534 6 C -0.087 4.087 7 H 0.138 0.862 8 C -0.113 4.113 9 C 0.153 3.847 10 N -0.627 5.627 11 C -0.243 4.243 12 H 0.084 0.916 13 C -0.065 4.065 14 N -0.949 5.949 15 Si 0.984 3.016 16 H -0.284 1.284 17 H -0.270 1.270 18 H -0.293 1.293 19 C 0.151 3.849 20 H 0.103 0.897 21 H 0.065 0.935 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.093 0.907 27 H 0.004 0.996 28 H 0.078 0.922 29 H 0.249 0.751 30 H 0.020 0.980 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.685 -8.811 -5.831 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 O -0.275 6.275 4 C 0.329 3.671 5 O -0.424 6.424 6 C -0.107 4.107 7 H 0.155 0.845 8 C -0.151 4.151 9 C 0.028 3.972 10 N -0.354 5.354 11 C -0.372 4.372 12 H 0.101 0.899 13 C -0.258 4.258 14 N -0.598 5.598 15 Si 0.812 3.188 16 H -0.211 1.211 17 H -0.195 1.195 18 H -0.220 1.220 19 C 0.025 3.975 20 H 0.121 0.879 21 H 0.084 0.916 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.112 0.888 27 H 0.022 0.978 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.390 -9.007 -5.711 14.889 hybrid contribution 0.385 0.472 0.726 0.948 sum -10.006 -8.535 -4.985 14.064 Atomic orbital electron populations 1.21823 0.90149 1.04444 1.03737 1.23352 0.97334 0.79189 1.02557 1.86543 1.23570 1.33900 1.83447 1.23556 0.80711 0.92055 0.70821 1.90610 1.61176 1.43733 1.46832 1.22105 0.97018 0.89535 1.02013 0.84461 1.22883 0.91959 0.98519 1.01753 1.21853 0.93831 0.90921 0.90624 1.44805 1.09967 1.52740 1.27897 1.19472 0.98039 1.18676 1.00969 0.89865 1.25664 0.95700 1.02187 1.02209 1.70025 1.02911 1.46577 1.40320 0.85002 0.76644 0.78444 0.78751 1.21076 1.19479 1.21958 1.21192 0.90823 0.93110 0.92355 0.87890 0.91627 0.90956 0.90800 0.91824 0.92294 0.88833 0.97763 0.90432 0.94148 0.96174 0.93388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 10.29 71.98 0.74 -1.45 16 2 C 0.05 1.09 6.19 71.98 0.45 1.54 16 3 O -0.36 -10.45 10.20 -51.39 -0.52 -10.97 16 4 C 0.48 16.46 7.12 71.24 0.51 16.96 16 5 O -0.53 -20.40 15.51 21.98 0.34 -20.06 16 6 C -0.09 -3.08 3.45 -10.35 -0.04 -3.12 16 7 H 0.14 4.07 8.14 -2.38 -0.02 4.05 16 8 C -0.11 -4.46 6.15 32.06 0.20 -4.26 16 9 C 0.15 7.59 5.91 86.93 0.51 8.10 16 10 N -0.63 -32.78 3.39 -691.55 -2.35 -35.13 16 11 C -0.24 -13.70 10.27 84.03 0.86 -12.84 16 12 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 13 C -0.07 -3.69 5.49 84.86 0.47 -3.23 16 14 N -0.95 -56.54 10.08 21.65 0.22 -56.33 16 15 Si 0.98 45.55 29.55 68.60 2.03 47.58 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 19 C 0.15 6.31 6.81 86.73 0.59 6.90 16 20 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 22 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 24 H 0.06 1.48 8.13 -2.39 -0.02 1.46 16 25 H 0.06 2.51 7.49 -2.39 -0.02 2.49 16 26 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 27 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.08 4.42 5.86 -2.39 -0.01 4.40 16 29 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 30 H 0.02 0.87 7.81 -2.39 -0.02 0.85 16 31 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -66.57 262.30 5.11 -61.47 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: 1.10 Total: 4.84 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 4.29 Total: 8.61 kcal Atomic # 7 Polarization: -89.33 SS G_CDS: -2.13 Total: -91.46 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.18 Total: -31.04 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -66.57 5.11 -61.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000200783055.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.411 kcal (2) G-P(sol) polarization free energy of solvation -66.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds