Wall clock time and date at job start Sun Mar 29 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53125 * 109.52084 * 2 1 4 4 C 1.53040 * 109.27817 * 182.37895 * 3 2 1 5 5 N 1.46852 * 109.52301 * 59.17509 * 4 3 2 6 6 C 1.46895 * 110.99985 * 174.15801 * 5 4 3 7 7 C 1.53000 * 109.47525 * 293.88387 * 6 5 4 8 8 H 1.09007 * 109.47084 * 60.66201 * 7 6 5 9 9 O 1.42897 * 109.47123 * 300.66244 * 7 6 5 10 10 C 1.50699 * 109.47129 * 180.65582 * 7 6 5 11 11 H 1.08000 * 120.00525 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00135 * 179.71880 * 10 7 6 13 13 N 1.31523 * 119.99766 * 0.28681 * 12 10 7 14 14 Si 1.86797 * 120.00534 * 180.27833 * 12 10 7 15 15 H 1.48508 * 109.46672 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47184 * 120.00125 * 14 12 10 17 17 H 1.48492 * 109.47681 * 240.00949 * 14 12 10 18 18 C 1.46841 * 111.20241 * 298.26234 * 5 4 3 19 19 C 1.53038 * 109.52344 * 61.73606 * 18 5 4 20 20 H 1.09002 * 109.47192 * 59.99738 * 1 2 3 21 21 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.47063 * 300.00054 * 1 2 3 23 23 H 1.08996 * 109.52364 * 120.12439 * 2 1 3 24 24 H 1.08991 * 109.50387 * 62.43971 * 3 2 1 25 25 H 1.08996 * 109.50474 * 302.31945 * 3 2 1 26 26 H 1.08999 * 109.45867 * 299.16668 * 4 3 2 27 27 H 1.08995 * 109.45826 * 179.19109 * 4 3 2 28 28 H 1.09001 * 109.47348 * 173.88222 * 6 5 4 29 29 H 1.09008 * 109.46734 * 53.88575 * 6 5 4 30 30 H 0.96699 * 113.99508 * 299.99399 * 9 7 6 31 31 H 0.96997 * 120.00086 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.46397 * 181.75674 * 18 5 4 33 33 H 1.09000 * 109.46290 * 301.72795 * 18 5 4 34 34 H 1.09004 * 109.50424 * 180.87811 * 19 18 5 35 35 H 1.09004 * 109.49945 * 60.76777 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4372 -0.0600 5 7 4.0115 0.7426 -1.2765 6 6 5.4684 0.8375 -1.4384 7 6 5.8597 2.2948 -1.6912 8 1 5.5581 2.9050 -0.8398 9 8 5.2049 2.7660 -2.8707 10 6 7.3526 2.3898 -1.8733 11 1 7.9615 1.4997 -1.8150 12 6 7.9406 3.6121 -2.1207 13 7 7.1992 4.6960 -2.1921 14 14 9.7903 3.7288 -2.3541 15 1 10.3914 2.3767 -2.2276 16 1 10.0854 4.2770 -3.7023 17 1 10.3644 4.6250 -1.3187 18 6 3.5721 -0.6586 -1.2767 19 6 2.0430 -0.7150 -1.2530 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8942 -0.5156 0.8885 24 1 1.7152 1.9450 0.9108 25 1 1.6455 1.9698 -0.8682 26 1 3.9665 0.9225 0.8156 27 1 3.9377 2.4634 -0.0746 28 1 5.7807 0.2254 -2.2845 29 1 5.9586 0.4816 -0.5321 30 1 5.4272 2.2682 -3.6694 31 1 7.6128 5.5560 -2.3658 32 1 3.9400 -1.1544 -2.1749 33 1 3.9678 -1.1634 -0.3954 34 1 1.7174 -1.7552 -1.2374 35 1 1.6469 -0.2224 -2.1410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219025298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:44 Heat of formation + Delta-G solvation = -67.078581 kcal Electronic energy + Delta-G solvation = -14855.828063 eV Core-core repulsion = 12466.887729 eV Total energy + Delta-G solvation = -2388.940333 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.80007 -35.82217 -33.64813 -32.02573 -30.51818 -29.05777 -26.89107 -24.19210 -22.89984 -21.72445 -20.05742 -19.32414 -16.98523 -15.17296 -14.74593 -14.62259 -14.41702 -14.17521 -13.92295 -13.51944 -13.20972 -12.72058 -12.28310 -12.05549 -11.76456 -11.54605 -11.12494 -10.92319 -10.86210 -10.75429 -10.63381 -10.37637 -10.12997 -9.95807 -9.85878 -8.90483 -8.52680 -8.03497 -7.53591 -5.97088 -4.15201 3.28459 3.36583 3.39885 4.36490 4.56686 4.95191 5.00860 5.05149 5.30568 5.52334 5.59777 5.66865 5.75766 5.83821 5.86250 5.92370 6.07370 6.12885 6.17647 6.25145 6.28262 6.38829 6.43786 6.56468 6.60716 6.72505 6.87937 7.65194 7.74141 7.84044 7.94823 8.25213 8.89257 9.50839 9.67750 11.07116 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066662 B = 0.006683 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.925699 B = 4189.016657 C = 4341.755073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.109 4.109 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.031 3.969 7 C 0.237 3.763 8 H 0.054 0.946 9 O -0.553 6.553 10 C -0.573 4.573 11 H 0.054 0.946 12 C 0.079 3.921 13 N -0.859 5.859 14 Si 0.888 3.112 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.283 1.283 18 C 0.054 3.946 19 C -0.109 4.109 20 H 0.055 0.945 21 H 0.049 0.951 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.084 0.916 28 H 0.062 0.938 29 H 0.024 0.976 30 H 0.342 0.658 31 H 0.259 0.741 32 H 0.068 0.932 33 H 0.021 0.979 34 H 0.057 0.943 35 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 -8.967 3.405 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.113 4.113 3 C -0.147 4.147 4 C -0.072 4.072 5 N -0.251 5.251 6 C -0.097 4.097 7 C 0.178 3.822 8 H 0.071 0.929 9 O -0.355 6.355 10 C -0.612 4.612 11 H 0.073 0.927 12 C -0.126 4.126 13 N -0.495 5.495 14 Si 0.715 3.285 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.074 4.074 19 C -0.146 4.146 20 H 0.074 0.926 21 H 0.068 0.932 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.090 0.910 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.042 0.958 30 H 0.185 0.815 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.039 0.961 34 H 0.076 0.924 35 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.844 -8.104 3.419 13.201 hybrid contribution 1.806 -0.766 0.273 1.981 sum -8.038 -8.870 3.692 12.526 Atomic orbital electron populations 1.21807 0.95559 1.01118 1.01657 1.21183 0.95130 0.96864 0.98088 1.21634 0.95571 0.95724 1.01787 1.22076 0.94741 1.00263 0.90114 1.61917 1.14214 1.11827 1.37098 1.23063 0.84725 1.02698 0.99171 1.19321 0.90402 0.86318 0.86110 0.92863 1.86555 1.71059 1.60472 1.17392 1.21715 0.93098 0.93761 1.52622 0.92742 1.25025 0.97737 0.95756 0.94128 1.70098 1.34744 0.98417 1.46225 0.86632 0.85880 0.78113 0.77830 1.19770 1.20861 1.20923 1.22065 0.95203 0.90375 0.99805 1.21620 0.95315 0.99347 0.98359 0.92607 0.93162 0.92996 0.92044 0.92227 0.91005 0.96123 0.89766 0.91978 0.95812 0.81514 0.93085 0.91388 0.96067 0.92403 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.20 37.16 0.34 -1.19 16 2 C -0.09 -1.20 2.79 -90.50 -0.25 -1.45 16 3 C -0.11 -1.61 5.38 -26.65 -0.14 -1.76 16 4 C 0.06 1.00 5.29 -3.83 -0.02 0.98 16 5 N -0.53 -9.95 4.51 -234.67 -1.06 -11.01 16 6 C 0.03 0.66 4.56 -3.83 -0.02 0.64 16 7 C 0.24 6.11 2.70 -27.88 -0.08 6.04 16 8 H 0.05 1.51 6.47 -51.93 -0.34 1.17 16 9 O -0.55 -14.73 12.57 -35.23 -0.44 -15.17 16 10 C -0.57 -15.98 8.76 -34.44 -0.30 -16.28 16 11 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 12 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 13 N -0.86 -25.74 12.83 55.43 0.71 -25.02 16 14 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 15 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.05 0.84 5.46 -3.84 -0.02 0.82 16 19 C -0.11 -1.44 5.38 -26.65 -0.14 -1.58 16 20 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 22 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 26 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 1.72 6.24 -51.93 -0.32 1.39 16 28 H 0.06 1.29 7.98 -51.93 -0.41 0.88 16 29 H 0.02 0.51 8.12 -51.92 -0.42 0.09 16 30 H 0.34 8.22 9.04 45.56 0.41 8.63 16 31 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.07 1.03 8.01 -51.93 -0.42 0.61 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 279.03 15.07 4.20 4.20 Total: -1.00 -30.19 279.03 -7.60 -37.79 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.27 Total: 4.50 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.73 Total: -11.61 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.35 Total: -36.03 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -0.44 Total: -15.17 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.19 -7.60 -37.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219025298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.285 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds