Wall clock time and date at job start Sun Mar 29 2020 22:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53125 * 109.52084 * 2 1 4 4 C 1.53040 * 109.27817 * 182.37895 * 3 2 1 5 5 N 1.46852 * 109.52301 * 59.17509 * 4 3 2 6 6 C 1.46895 * 110.99985 * 174.15801 * 5 4 3 7 7 C 1.53000 * 109.47525 * 293.88387 * 6 5 4 8 8 H 1.09007 * 109.47084 * 60.66201 * 7 6 5 9 9 O 1.42897 * 109.47123 * 300.66244 * 7 6 5 10 10 C 1.50699 * 109.47129 * 180.65582 * 7 6 5 11 11 H 1.08000 * 120.00525 * 0.02562 * 10 7 6 12 12 C 1.37875 * 120.00135 * 179.71880 * 10 7 6 13 13 N 1.31523 * 119.99766 * 0.28681 * 12 10 7 14 14 Si 1.86797 * 120.00534 * 180.27833 * 12 10 7 15 15 H 1.48508 * 109.46672 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47184 * 120.00125 * 14 12 10 17 17 H 1.48492 * 109.47681 * 240.00949 * 14 12 10 18 18 C 1.46841 * 111.20241 * 298.26234 * 5 4 3 19 19 C 1.53038 * 109.52344 * 61.73606 * 18 5 4 20 20 H 1.09002 * 109.47192 * 59.99738 * 1 2 3 21 21 H 1.08998 * 109.47402 * 179.97438 * 1 2 3 22 22 H 1.09008 * 109.47063 * 300.00054 * 1 2 3 23 23 H 1.08996 * 109.52364 * 120.12439 * 2 1 3 24 24 H 1.08991 * 109.50387 * 62.43971 * 3 2 1 25 25 H 1.08996 * 109.50474 * 302.31945 * 3 2 1 26 26 H 1.08999 * 109.45867 * 299.16668 * 4 3 2 27 27 H 1.08995 * 109.45826 * 179.19109 * 4 3 2 28 28 H 1.09001 * 109.47348 * 173.88222 * 6 5 4 29 29 H 1.09008 * 109.46734 * 53.88575 * 6 5 4 30 30 H 0.96699 * 113.99508 * 299.99399 * 9 7 6 31 31 H 0.96997 * 120.00086 * 179.97438 * 13 12 10 32 32 H 1.08996 * 109.46397 * 181.75674 * 18 5 4 33 33 H 1.09000 * 109.46290 * 301.72795 * 18 5 4 34 34 H 1.09004 * 109.50424 * 180.87811 * 19 18 5 35 35 H 1.09004 * 109.49945 * 60.76777 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0416 1.4432 0.0000 4 6 3.5708 1.4372 -0.0600 5 7 4.0115 0.7426 -1.2765 6 6 5.4684 0.8375 -1.4384 7 6 5.8597 2.2948 -1.6912 8 1 5.5581 2.9050 -0.8398 9 8 5.2049 2.7660 -2.8707 10 6 7.3526 2.3898 -1.8733 11 1 7.9615 1.4997 -1.8150 12 6 7.9406 3.6121 -2.1207 13 7 7.1992 4.6960 -2.1921 14 14 9.7903 3.7288 -2.3541 15 1 10.3914 2.3767 -2.2276 16 1 10.0854 4.2770 -3.7023 17 1 10.3644 4.6250 -1.3187 18 6 3.5721 -0.6586 -1.2767 19 6 2.0430 -0.7150 -1.2530 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8942 -0.5156 0.8885 24 1 1.7152 1.9450 0.9108 25 1 1.6455 1.9698 -0.8682 26 1 3.9665 0.9225 0.8156 27 1 3.9377 2.4634 -0.0746 28 1 5.7807 0.2254 -2.2845 29 1 5.9586 0.4816 -0.5321 30 1 5.4272 2.2682 -3.6694 31 1 7.6128 5.5560 -2.3658 32 1 3.9400 -1.1544 -2.1749 33 1 3.9678 -1.1634 -0.3954 34 1 1.7174 -1.7552 -1.2374 35 1 1.6469 -0.2224 -2.1410 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219025298.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:26:44 Heat of formation + Delta-G solvation = -88.873374 kcal Electronic energy + Delta-G solvation = -14856.773156 eV Core-core repulsion = 12466.887729 eV Total energy + Delta-G solvation = -2389.885426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.15611 -37.65728 -35.11832 -34.20355 -31.77468 -30.68092 -28.48024 -25.96406 -24.22676 -23.10368 -21.77936 -20.52519 -19.07528 -16.70313 -16.64787 -16.35758 -16.11762 -15.44327 -15.29518 -14.92630 -14.82123 -14.31223 -13.76544 -13.26874 -13.17300 -12.92757 -12.85051 -12.65278 -12.61089 -12.24564 -12.10219 -11.98850 -11.53942 -11.27064 -11.12403 -10.87830 -10.67116 -10.07634 -9.07203 -8.13501 -6.39908 1.39582 1.40466 1.52984 2.38276 3.07867 3.13333 3.86976 3.91796 3.95277 4.23706 4.32095 4.36892 4.51972 4.54731 4.58974 4.68157 4.82788 4.86782 4.89330 4.97494 5.02480 5.04320 5.19518 5.28495 5.29117 5.39398 5.57980 5.61076 5.75811 6.03410 6.25111 6.38460 6.74283 7.34582 7.62823 8.91391 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.066662 B = 0.006683 C = 0.006447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.925699 B = 4189.016657 C = 4341.755073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.104 4.104 4 C 0.056 3.944 5 N -0.539 5.539 6 C 0.048 3.952 7 C 0.237 3.763 8 H 0.019 0.981 9 O -0.569 6.569 10 C -0.589 4.589 11 H 0.058 0.942 12 C 0.025 3.975 13 N -0.901 5.901 14 Si 0.962 3.038 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.279 1.279 18 C 0.051 3.949 19 C -0.104 4.104 20 H 0.052 0.948 21 H 0.067 0.933 22 H 0.059 0.941 23 H 0.068 0.932 24 H 0.074 0.926 25 H 0.057 0.943 26 H 0.025 0.975 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.020 0.980 30 H 0.352 0.648 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.027 0.973 34 H 0.086 0.914 35 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -10.642 3.569 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.109 4.109 3 C -0.142 4.142 4 C -0.072 4.072 5 N -0.264 5.264 6 C -0.080 4.080 7 C 0.179 3.821 8 H 0.036 0.964 9 O -0.372 6.372 10 C -0.627 4.627 11 H 0.077 0.923 12 C -0.177 4.177 13 N -0.538 5.538 14 Si 0.787 3.213 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.076 4.076 19 C -0.141 4.141 20 H 0.071 0.929 21 H 0.086 0.914 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.039 0.961 30 H 0.196 0.804 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.104 0.896 35 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.131 -9.803 3.585 14.546 hybrid contribution 1.857 -0.243 0.232 1.887 sum -8.273 -10.046 3.817 13.563 Atomic orbital electron populations 1.21755 0.93546 1.02357 1.01956 1.21174 0.96750 0.94893 0.98116 1.21605 0.92928 0.97732 1.01902 1.22049 0.97066 0.98098 0.89990 1.61866 1.12332 1.14373 1.37793 1.22673 0.86727 0.99413 0.99205 1.19174 0.89681 0.88461 0.84767 0.96366 1.86500 1.71216 1.61355 1.18132 1.22096 0.94297 0.94061 1.52274 0.92341 1.25919 1.02835 0.95287 0.93657 1.70240 1.37057 0.99052 1.47443 0.85474 0.79600 0.78449 0.77813 1.18712 1.20345 1.20448 1.22193 0.97072 0.88048 1.00327 1.21617 0.93220 1.01076 0.98222 0.92924 0.91440 0.92176 0.91371 0.90711 0.92438 0.95668 0.93465 0.91270 0.96134 0.80422 0.92973 0.90850 0.95474 0.89554 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.20 71.98 0.66 -1.86 16 2 C -0.09 -2.09 2.79 -10.71 -0.03 -2.12 16 3 C -0.10 -2.99 5.38 30.65 0.16 -2.82 16 4 C 0.06 2.04 5.29 86.33 0.46 2.49 16 5 N -0.54 -20.32 4.51 -896.37 -4.04 -24.36 16 6 C 0.05 2.06 4.56 86.30 0.39 2.46 16 7 C 0.24 12.61 2.70 29.85 0.08 12.69 16 8 H 0.02 1.10 6.47 -2.38 -0.02 1.09 16 9 O -0.57 -31.10 12.57 -148.98 -1.87 -32.98 16 10 C -0.59 -33.17 8.76 25.60 0.22 -32.95 16 11 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 12 C 0.03 1.44 5.40 84.65 0.46 1.90 16 13 N -0.90 -55.07 12.83 21.45 0.28 -54.79 16 14 Si 0.96 43.92 29.54 68.60 2.03 45.95 16 15 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 16 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 18 C 0.05 1.51 5.46 86.33 0.47 1.98 16 19 C -0.10 -2.48 5.38 30.65 0.16 -2.31 16 20 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 21 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 24 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.05 2.04 6.24 -2.39 -0.01 2.02 16 28 H 0.07 2.85 7.98 -2.39 -0.02 2.83 16 29 H 0.02 0.88 8.12 -2.38 -0.02 0.86 16 30 H 0.35 17.21 9.04 -74.06 -0.67 16.54 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.07 2.07 8.01 -2.39 -0.02 2.05 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 Total: -1.00 -65.03 279.03 -0.19 -65.22 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.38 Total: 21.50 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: 3.05 Total: -20.54 kcal Atomic # 7 Polarization: -75.39 SS G_CDS: -3.77 Total: -79.16 kcal Atomic # 8 Polarization: -31.10 SS G_CDS: -1.87 Total: -32.98 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.03 -0.19 -65.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219025298.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.649 kcal (2) G-P(sol) polarization free energy of solvation -65.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds