Wall clock time and date at job start Sun Mar 29 2020 22:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86793 * 120.00420 * 2 1 4 4 H 1.48497 * 109.47404 * 240.00283 * 3 2 1 5 5 H 1.48506 * 109.47105 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47381 * 119.99944 * 3 2 1 7 7 C 1.37885 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99567 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00205 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47102 * 180.02562 * 9 7 2 11 11 N 1.46903 * 109.46899 * 180.02562 * 10 9 7 12 12 C 1.46898 * 110.99673 * 179.97438 * 11 10 9 13 13 C 1.53006 * 109.47006 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47127 * 179.97438 * 13 12 11 15 15 H 1.08998 * 110.80500 * 305.70226 * 14 13 12 16 16 C 1.54812 * 110.90806 * 182.07381 * 14 13 12 17 17 C 1.54092 * 104.18880 * 220.92459 * 16 14 13 18 18 O 1.43747 * 107.29632 * 357.96691 * 17 16 14 19 19 C 1.44425 * 106.99764 * 26.48885 * 18 17 16 20 20 H 0.97001 * 119.99793 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47453 * 60.00011 * 9 7 2 22 22 H 1.09002 * 109.47376 * 300.00413 * 9 7 2 23 23 H 1.08993 * 109.47042 * 60.00237 * 10 9 7 24 24 H 1.08995 * 109.46589 * 299.99477 * 10 9 7 25 25 H 1.00895 * 111.00497 * 56.03863 * 11 10 9 26 26 H 1.09001 * 109.47062 * 59.99745 * 12 11 10 27 27 H 1.08993 * 109.47084 * 299.99192 * 12 11 10 28 28 H 1.09001 * 109.46801 * 300.00064 * 13 12 11 29 29 H 1.09001 * 109.46998 * 59.99660 * 13 12 11 30 30 H 1.08998 * 110.48604 * 339.59909 * 16 14 13 31 31 H 1.08994 * 110.48432 * 102.24284 * 16 14 13 32 32 H 1.08998 * 109.88286 * 117.39770 * 17 16 14 33 33 H 1.09000 * 109.88021 * 238.54796 * 17 16 14 34 34 H 1.08998 * 110.65185 * 201.47588 * 19 18 17 35 35 H 1.09007 * 110.59382 * 78.47117 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 7 1.5105 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6348 -7.3801 -0.0018 14 6 2.5976 -8.5692 -0.0031 15 1 3.3027 -8.4955 -0.8310 16 6 1.8221 -9.9080 -0.0554 17 6 2.5825 -10.8235 0.9233 18 8 3.7019 -10.0751 1.4265 19 6 3.3439 -8.6780 1.3510 20 1 -0.4850 0.8401 0.0004 21 1 0.6239 -2.5568 -0.8902 22 1 0.6245 -2.5571 0.8896 23 1 2.8717 -3.6045 0.8894 24 1 2.8716 -3.6044 -0.8906 25 1 0.8743 -4.9842 -0.7826 26 1 3.0630 -6.0354 0.8882 27 1 3.0628 -6.0346 -0.8918 28 1 1.0072 -7.4213 0.8885 29 1 1.0064 -7.4209 -0.8915 30 1 0.7934 -9.7662 0.2759 31 1 1.8456 -10.3233 -1.0629 32 1 1.9284 -11.1106 1.7466 33 1 2.9359 -11.7125 0.4008 34 1 4.2363 -8.0521 1.3489 35 1 2.6849 -8.4059 2.1755 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220875422.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:36 Heat of formation + Delta-G solvation = -71.488150 kcal Electronic energy + Delta-G solvation = -13817.073319 eV Core-core repulsion = 11427.941772 eV Total energy + Delta-G solvation = -2389.131546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 213.147 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61865 -36.41223 -33.96874 -32.65737 -30.57380 -29.15194 -26.86198 -24.13612 -23.05262 -21.58320 -20.80869 -20.16335 -16.77417 -16.31966 -15.88595 -15.66568 -15.05238 -14.50035 -14.17217 -13.66087 -13.51718 -13.21646 -12.69028 -12.20150 -11.94183 -11.69132 -11.55018 -11.07895 -11.05008 -10.89117 -10.80787 -10.54392 -10.50169 -9.97189 -9.83737 -9.36056 -9.15540 -8.34954 -7.83019 -5.99523 -4.02240 3.33771 3.37991 3.40456 3.76791 4.33837 4.42689 4.53540 4.65574 4.84417 5.05195 5.10815 5.26348 5.33416 5.36325 5.50376 5.54403 5.63744 5.67187 5.75715 5.82417 5.91079 6.16383 6.25553 6.34400 6.43448 6.69141 6.97702 7.47515 7.72594 7.82612 7.95759 8.08429 8.43725 9.04826 9.61453 11.11942 Molecular weight = 213.15amu Principal moments of inertia in cm(-1) A = 0.087454 B = 0.004080 C = 0.003971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 320.090839 B = 6860.956626 C = 7048.708463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.693 5.693 12 C 0.057 3.943 13 C -0.107 4.107 14 C -0.120 4.120 15 H 0.084 0.916 16 C -0.153 4.153 17 C 0.047 3.953 18 O -0.383 6.383 19 C 0.050 3.950 20 H 0.261 0.739 21 H 0.013 0.987 22 H 0.025 0.975 23 H 0.058 0.942 24 H 0.015 0.985 25 H 0.335 0.665 26 H 0.067 0.933 27 H 0.022 0.978 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -18.490 -0.360 18.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.013 4.013 10 C -0.063 4.063 11 N -0.324 5.324 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.139 4.139 15 H 0.102 0.898 16 C -0.191 4.191 17 C -0.030 4.030 18 O -0.302 6.302 19 C -0.027 4.027 20 H 0.071 0.929 21 H 0.032 0.968 22 H 0.043 0.957 23 H 0.076 0.924 24 H 0.033 0.967 25 H 0.152 0.848 26 H 0.085 0.915 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.075 0.925 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.624 -18.459 0.410 18.815 hybrid contribution 0.547 1.070 -1.052 1.597 sum 4.171 -17.389 -0.642 17.894 Atomic orbital electron populations 1.69961 1.06048 1.26719 1.50556 1.25007 0.94854 0.99232 0.95273 0.86636 0.79558 0.83056 0.78606 1.20285 1.21255 1.20200 1.21150 0.92961 0.91051 1.51033 0.92807 1.19069 0.94030 0.90449 0.97706 1.22159 0.96982 0.88522 0.98613 1.60596 1.19893 1.02236 1.49668 1.21959 0.94794 0.90496 1.00071 1.21554 0.97515 0.92475 1.02945 1.22736 0.97831 0.94647 0.98691 0.89800 1.23004 1.00273 0.95302 1.00473 1.23135 0.88438 0.95258 0.96204 1.88861 1.38320 1.17743 1.85308 1.23714 0.99986 0.82658 0.96315 0.92921 0.96824 0.95653 0.92369 0.96709 0.84765 0.91455 0.95957 0.90765 0.91719 0.90343 0.90604 0.92511 0.90167 0.88868 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 10 C 0.07 1.40 5.62 -3.82 -0.02 1.38 16 11 N -0.69 -12.39 6.50 -113.78 -0.74 -13.13 16 12 C 0.06 0.80 5.56 -3.82 -0.02 0.78 16 13 C -0.11 -1.21 4.87 -26.73 -0.13 -1.34 16 14 C -0.12 -1.20 3.12 -88.61 -0.28 -1.47 16 15 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 16 C -0.15 -1.30 6.60 -25.21 -0.17 -1.47 16 17 C 0.05 0.42 7.70 37.73 0.29 0.71 16 18 O -0.38 -4.60 11.52 -35.23 -0.41 -5.01 16 19 C 0.05 0.53 6.49 38.21 0.25 0.78 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.34 5.75 8.73 -39.29 -0.34 5.40 16 26 H 0.07 0.95 7.58 -51.93 -0.39 0.55 16 27 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.96 8.11 -51.93 -0.42 0.54 16 35 H 0.06 0.69 7.98 -51.93 -0.41 0.27 16 LS Contribution 287.71 15.07 4.34 4.34 Total: -1.00 -30.75 287.71 -7.90 -38.64 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -6.17 Total: -1.33 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -0.63 Total: -13.89 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.00 Total: -39.53 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.41 Total: -5.01 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.75 -7.90 -38.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220875422.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.845 kcal (2) G-P(sol) polarization free energy of solvation -30.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds